Wall clock time and date at job start Mon Mar 8 2021 08:06:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 H 1.00892 * 109.47244 * 2 1 4 4 C 1.46897 * 109.46980 * 120.00081 * 2 1 3 5 5 C 1.46900 * 109.47200 * 239.99822 * 2 1 3 6 6 C 1.52995 * 109.47166 * 65.00240 * 5 2 1 7 7 H 1.09000 * 112.90608 * 316.25037 * 6 5 2 8 8 C 1.53782 * 113.61618 * 87.50225 * 6 5 2 9 9 C 1.53775 * 87.08146 * 139.98335 * 8 6 5 10 10 H 1.08997 * 113.69266 * 220.01088 * 9 8 6 11 11 N 1.46499 * 113.61628 * 89.11745 * 9 8 6 12 12 C 1.38615 * 120.00055 * 107.50273 * 11 9 8 13 13 N 1.29681 * 124.94756 * 0.02562 * 12 11 9 14 14 C 1.32123 * 116.86476 * 179.97438 * 13 12 11 15 15 C 1.33330 * 114.58096 * 0.02562 * 14 13 12 16 16 C 1.50697 * 125.95409 * 179.97438 * 15 14 13 17 17 O 1.42904 * 109.46844 * 64.99365 * 16 15 14 18 18 Si 1.86296 * 109.47044 * 184.99590 * 16 15 14 19 19 S 1.70962 * 124.94647 * 179.72208 * 12 11 9 20 20 C 1.53778 * 87.08470 * 334.56741 * 9 8 6 21 21 H 1.09004 * 109.47302 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.47328 * 300.00031 * 1 2 3 23 23 H 1.08996 * 109.46672 * 59.99937 * 1 2 3 24 24 H 1.09006 * 109.47581 * 180.02562 * 4 2 1 25 25 H 1.09007 * 109.46986 * 299.99838 * 4 2 1 26 26 H 1.08996 * 109.47714 * 60.00022 * 4 2 1 27 27 H 1.09002 * 109.47382 * 304.99900 * 5 2 1 28 28 H 1.09003 * 109.47172 * 185.00473 * 5 2 1 29 29 H 1.08998 * 113.61198 * 25.43230 * 8 6 5 30 30 H 1.09000 * 113.61268 * 254.52942 * 8 6 5 31 31 H 0.97004 * 120.00244 * 287.77664 * 11 9 8 32 32 H 1.08001 * 122.71065 * 179.97438 * 14 13 12 33 33 H 1.08996 * 109.47153 * 304.99984 * 16 15 14 34 34 H 0.96704 * 114.00031 * 60.00577 * 17 16 15 35 35 H 1.48490 * 110.00147 * 58.68285 * 18 16 15 36 36 H 1.48505 * 109.99897 * 180.02562 * 18 16 15 37 37 H 1.09000 * 113.61692 * 139.97888 * 20 9 8 38 38 H 1.08998 * 113.61780 * 270.89146 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 1 1.8053 0.9512 0.0000 4 6 1.9586 -0.6925 1.1994 5 6 1.9587 -0.6925 -1.1994 6 6 1.5540 0.0976 -2.4455 7 1 0.5243 0.4528 -2.4067 8 6 2.5665 1.1855 -2.8409 9 6 2.3147 0.7781 -4.3021 10 1 3.2162 0.7642 -4.9145 11 7 1.2102 1.5055 -4.9323 12 6 1.4741 2.4741 -5.8881 13 7 2.6578 2.8121 -6.2959 14 6 2.7247 3.7574 -7.2166 15 6 1.5433 4.2397 -7.6032 16 6 1.3217 5.3181 -8.6323 17 8 1.7547 4.8516 -9.9118 18 14 -0.4907 5.7424 -8.7067 19 16 0.2862 3.3918 -6.7063 20 6 1.9137 -0.6059 -3.7648 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3632 0.5138 -0.8900 24 1 3.0487 -0.6922 1.1997 25 1 1.5953 -0.1786 2.0894 26 1 1.5954 -1.7201 1.1995 27 1 1.5241 -1.6911 -1.2453 28 1 3.0450 -0.7708 -1.1557 29 1 3.5814 0.9821 -2.4995 30 1 2.2345 2.1969 -2.6062 31 1 0.2943 1.3122 -4.6777 32 1 3.6608 4.1115 -7.6226 33 1 1.8917 6.2055 -8.3572 34 1 1.2893 4.0623 -10.2208 35 1 -0.9606 6.1987 -7.3740 36 1 -0.7226 6.8045 -9.7185 37 1 1.0548 -1.0407 -4.2760 38 1 2.7502 -1.2990 -3.6760 There are 47 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 47 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_16607414_15704118.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:06:18 Heat of formation + Delta-G solvation = 155.625645 kcal Electronic energy + Delta-G solvation = -18698.852751 eV Core-core repulsion = 15789.424153 eV Total energy + Delta-G solvation = -2909.428598 eV No. of doubly occupied orbitals = 47 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 271.122 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.17520 -40.85617 -39.68683 -37.88660 -35.24191 -31.42384 -30.05336 -29.39714 -26.87721 -26.73853 -25.87639 -24.76594 -23.68938 -21.53739 -20.25605 -19.65067 -19.24402 -18.15182 -17.77185 -17.28949 -16.92030 -16.66287 -16.28142 -15.92268 -15.64159 -15.36448 -14.96902 -14.89838 -14.13885 -14.03075 -13.77064 -13.59701 -13.48305 -13.25596 -13.14855 -12.94949 -12.91007 -12.52029 -12.13122 -11.97543 -11.84768 -11.33637 -11.09129 -10.87898 -10.32476 -10.21490 -8.80427 -5.18449 -0.12106 -0.01293 0.59549 1.02081 1.21019 1.50506 1.86551 1.90176 2.10227 2.90354 2.95942 3.17317 3.39731 3.40769 3.47699 3.62266 3.76757 3.79657 3.86923 3.90872 4.18415 4.26372 4.35707 4.41374 4.45448 4.50531 4.64553 4.66402 4.71726 4.76213 4.78449 4.83710 4.86570 4.94655 5.01867 5.06630 5.26680 5.82128 6.14230 6.67056 6.95437 Molecular weight = 271.12amu Principal moments of inertia in cm(-1) A = 0.040637 B = 0.003868 C = 0.003691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.856294 B = 7236.990424 C = 7583.410416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.372 5.372 3 H 0.435 0.565 4 C -0.047 4.047 5 C 0.009 3.991 6 C -0.122 4.122 7 H 0.128 0.872 8 C -0.152 4.152 9 C 0.110 3.890 10 H 0.074 0.926 11 N -0.665 5.665 12 C 0.316 3.684 13 N -0.575 5.575 14 C 0.101 3.899 15 C -0.309 4.309 16 C -0.017 4.017 17 O -0.553 6.553 18 Si 0.732 3.268 19 S 0.121 5.879 20 C -0.127 4.127 21 H 0.124 0.876 22 H 0.125 0.875 23 H 0.121 0.879 24 H 0.124 0.876 25 H 0.124 0.876 26 H 0.121 0.879 27 H 0.143 0.857 28 H 0.141 0.859 29 H 0.110 0.890 30 H 0.072 0.928 31 H 0.426 0.574 32 H 0.171 0.829 33 H 0.116 0.884 34 H 0.395 0.605 35 H -0.262 1.262 36 H -0.283 1.283 37 H 0.083 0.917 38 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.060 -15.813 26.070 30.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 N 0.052 4.948 3 H 0.272 0.728 4 C -0.189 4.189 5 C -0.113 4.113 6 C -0.140 4.140 7 H 0.146 0.854 8 C -0.191 4.191 9 C 0.003 3.997 10 H 0.093 0.907 11 N -0.305 5.305 12 C -0.055 4.055 13 N -0.301 5.301 14 C -0.049 4.049 15 C -0.432 4.432 16 C -0.130 4.130 17 O -0.361 6.361 18 Si 0.636 3.364 19 S 0.371 5.629 20 C -0.166 4.166 21 H 0.142 0.858 22 H 0.143 0.857 23 H 0.139 0.861 24 H 0.142 0.858 25 H 0.142 0.858 26 H 0.140 0.860 27 H 0.161 0.839 28 H 0.159 0.841 29 H 0.128 0.872 30 H 0.091 0.909 31 H 0.267 0.733 32 H 0.188 0.812 33 H 0.134 0.866 34 H 0.245 0.755 35 H -0.188 1.188 36 H -0.209 1.209 37 H 0.102 0.898 38 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -3.869 -15.273 26.553 30.876 hybrid contribution 1.360 1.011 -0.591 1.795 sum -2.508 -14.262 25.962 29.728 Atomic orbital electron populations 1.24204 0.76288 1.09754 1.09429 1.44807 1.15914 1.19415 1.14683 0.72845 1.24129 1.05704 1.02429 0.86589 1.23920 1.05830 0.99658 0.81889 1.23074 1.01441 0.96250 0.93244 0.85447 1.23700 1.00953 0.99513 0.94943 1.22022 0.89831 0.93371 0.94513 0.90741 1.43676 1.09956 1.37135 1.39781 1.23964 0.92173 0.94623 0.94693 1.66448 1.23442 1.20727 1.19457 1.21388 0.98801 0.92152 0.92601 1.25660 0.95160 1.10973 1.11391 1.24223 1.11520 0.95439 0.81841 1.86508 1.66730 1.50487 1.32364 0.94232 0.75282 0.87363 0.79498 1.83829 1.09050 1.33329 1.36726 1.23313 1.03704 0.94955 0.94635 0.85783 0.85665 0.86078 0.85792 0.85775 0.86025 0.83862 0.84080 0.87194 0.90897 0.73349 0.81203 0.86643 0.75530 1.18819 1.20881 0.89830 0.86839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 3.48 8.98 127.69 1.15 4.63 16 2 N -0.37 24.60 0.66 -948.84 -0.62 23.97 16 3 H 0.44 -29.71 8.44 -89.70 -0.76 -30.47 16 4 C -0.05 2.98 9.19 127.69 1.17 4.15 16 5 C 0.01 -0.55 4.48 86.30 0.39 -0.16 16 6 C -0.12 6.53 3.45 -10.27 -0.04 6.50 16 7 H 0.13 -7.22 6.10 -2.39 -0.01 -7.23 16 8 C -0.15 6.78 7.43 31.12 0.23 7.01 16 9 C 0.11 -3.90 4.44 45.52 0.20 -3.69 16 10 H 0.07 -1.98 7.66 -2.39 -0.02 -2.00 16 11 N -0.66 20.91 5.42 -327.92 -1.78 19.13 16 12 C 0.32 -6.80 8.09 179.32 1.45 -5.35 16 13 N -0.57 8.68 9.83 -202.02 -1.99 6.69 16 14 C 0.10 -1.38 11.24 83.54 0.94 -0.45 16 15 C -0.31 4.89 5.73 24.57 0.14 5.04 16 16 C -0.02 0.25 2.99 71.23 0.21 0.46 16 17 O -0.55 7.26 12.88 -148.98 -1.92 5.34 16 18 Si 0.73 -11.54 31.07 68.60 2.13 -9.41 16 19 S 0.12 -2.56 20.59 -56.49 -1.16 -3.72 16 20 C -0.13 5.63 7.39 31.12 0.23 5.86 16 21 H 0.12 -7.83 8.11 -2.38 -0.02 -7.85 16 22 H 0.12 -7.90 8.14 -2.39 -0.02 -7.92 16 23 H 0.12 -7.64 6.10 -2.39 -0.01 -7.66 16 24 H 0.12 -7.84 8.11 -2.38 -0.02 -7.86 16 25 H 0.12 -7.83 8.14 -2.38 -0.02 -7.85 16 26 H 0.12 -7.67 8.14 -2.39 -0.02 -7.69 16 27 H 0.14 -9.02 8.09 -2.39 -0.02 -9.04 16 28 H 0.14 -8.81 7.79 -2.39 -0.02 -8.83 16 29 H 0.11 -5.04 7.90 -2.39 -0.02 -5.06 16 30 H 0.07 -3.03 8.14 -2.39 -0.02 -3.05 16 31 H 0.43 -16.01 8.83 -92.71 -0.82 -16.83 16 32 H 0.17 -2.34 8.06 -2.91 -0.02 -2.36 16 33 H 0.12 -1.62 7.96 -2.39 -0.02 -1.64 16 34 H 0.39 -8.21 8.70 -74.05 -0.64 -8.86 16 35 H -0.26 3.30 7.11 99.48 0.71 4.00 16 36 H -0.28 2.14 7.11 99.48 0.71 2.85 16 37 H 0.08 -3.52 8.14 -2.39 -0.02 -3.54 16 38 H 0.11 -5.09 8.10 -2.39 -0.02 -5.11 16 Total: 1.00 -77.61 318.71 -0.37 -77.98 By element: Atomic # 1 Polarization: -142.87 SS G_CDS: -1.11 Total: -143.97 kcal Atomic # 6 Polarization: 17.91 SS G_CDS: 6.08 Total: 23.99 kcal Atomic # 7 Polarization: 54.18 SS G_CDS: -4.39 Total: 49.80 kcal Atomic # 8 Polarization: 7.26 SS G_CDS: -1.92 Total: 5.34 kcal Atomic # 14 Polarization: -11.54 SS G_CDS: 2.13 Total: -9.41 kcal Atomic # 16 Polarization: -2.56 SS G_CDS: -1.16 Total: -3.72 kcal Total: -77.61 -0.37 -77.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16607414_15704118.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 233.603 kcal (2) G-P(sol) polarization free energy of solvation -77.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 155.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 155.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds