Wall clock time and date at job start Mon Mar 8 2021 08:30:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86300 * 109.47509 * 2 1 4 4 C 1.50701 * 109.46878 * 119.99874 * 2 1 3 5 5 C 1.38602 * 120.72503 * 244.71971 * 4 2 1 6 6 N 1.32269 * 119.19882 * 179.71959 * 5 4 2 7 7 C 1.32494 * 120.74143 * 0.56689 * 6 5 4 8 8 N 1.38406 * 119.21663 * 179.73271 * 7 6 5 9 9 C 1.46493 * 120.00140 * 359.97233 * 8 7 6 10 10 H 1.08998 * 109.47650 * 325.00681 * 9 8 7 11 11 C 1.53004 * 109.46908 * 85.00459 * 9 8 7 12 12 C 1.53007 * 109.46974 * 180.02562 * 11 9 8 13 13 C 1.52999 * 109.47348 * 299.99708 * 12 11 9 14 14 H 1.08998 * 109.47160 * 300.00774 * 13 12 11 15 15 C 1.50697 * 109.47331 * 180.02562 * 13 12 11 16 16 N 1.30518 * 126.34261 * 145.02516 * 15 13 12 17 17 N 1.28598 * 109.66974 * 179.97438 * 16 15 13 18 18 C 1.30516 * 109.67344 * 359.97438 * 17 16 15 19 19 N 1.35485 * 126.34767 * 324.71927 * 15 13 12 20 20 C 1.53004 * 109.46844 * 60.00212 * 13 12 11 21 21 C 1.52999 * 109.47387 * 205.00150 * 9 8 7 22 22 N 1.32492 * 121.56442 * 359.70597 * 7 6 5 23 23 C 1.32274 * 120.74248 * 0.02562 * 22 7 6 24 24 H 0.96700 * 113.99509 * 59.99951 * 1 2 3 25 25 H 1.09001 * 109.47395 * 239.99652 * 2 1 3 26 26 H 1.48502 * 109.99691 * 59.99915 * 3 2 1 27 27 H 1.48495 * 109.99988 * 181.31552 * 3 2 1 28 28 H 1.08003 * 120.39418 * 359.97438 * 5 4 2 29 29 H 0.97005 * 119.99817 * 179.97438 * 8 7 6 30 30 H 1.09000 * 109.47213 * 300.00110 * 11 9 8 31 31 H 1.09003 * 109.47012 * 60.00390 * 11 9 8 32 32 H 1.09001 * 109.46424 * 180.02562 * 12 11 9 33 33 H 1.08989 * 109.47079 * 60.00415 * 12 11 9 34 34 H 1.08004 * 126.34963 * 180.02562 * 18 17 16 35 35 H 0.97009 * 126.98034 * 0.02798 * 19 15 13 36 36 H 1.09000 * 109.47213 * 179.97438 * 20 13 12 37 37 H 1.09003 * 109.47193 * 60.00156 * 20 13 12 38 38 H 1.09003 * 109.47615 * 300.00273 * 21 9 8 39 39 H 1.09001 * 109.47101 * 60.00787 * 21 9 8 40 40 H 1.07997 * 120.40449 * 180.02562 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 2.6470 -0.0264 2.2005 6 7 3.0687 -0.6785 3.2712 7 6 2.8235 -1.9725 3.4164 8 7 3.2843 -2.6248 4.5467 9 6 4.0340 -1.8850 5.5649 10 1 4.6486 -1.1248 5.0829 11 6 3.0558 -1.2129 6.5306 12 6 3.8388 -0.4397 7.5937 13 6 4.7375 -1.4056 8.3684 14 1 4.1232 -2.1658 8.8507 15 6 5.5082 -0.6441 9.4158 16 7 5.8407 -1.0795 10.6005 17 7 6.4933 -0.1672 11.2295 18 6 6.6072 0.8913 10.4745 19 7 5.9893 0.6171 9.3002 20 6 5.7157 -2.0776 7.4027 21 6 4.9323 -2.8513 6.3395 22 7 2.1472 -2.6566 2.5054 23 6 1.6929 -2.0635 1.4138 24 1 -0.3932 0.4417 -0.7651 25 1 1.7924 -0.5139 -0.8899 26 1 1.5616 2.4678 1.2085 27 1 3.5347 1.7701 -0.0320 28 1 2.8543 1.0273 2.0854 29 1 3.1109 -3.5719 4.6647 30 1 2.4158 -0.5244 5.9788 31 1 2.4412 -1.9731 7.0127 32 1 3.1418 0.0387 8.2818 33 1 4.4530 0.3205 7.1112 34 1 7.1051 1.8134 10.7358 35 1 5.9067 1.2052 8.5331 36 1 6.3564 -2.7654 7.9547 37 1 6.3301 -1.3174 6.9203 38 1 4.3177 -3.6116 6.8217 39 1 5.6293 -3.3301 5.6516 40 1 1.1419 -2.6264 0.6750 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_16607478_12175864.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:30:47 Heat of formation + Delta-G solvation = 101.776289 kcal Electronic energy + Delta-G solvation = -24204.003130 eV Core-core repulsion = 20635.786788 eV Total energy + Delta-G solvation = -3568.216342 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 303.144 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.12627 -42.15191 -40.15284 -38.04766 -36.55058 -34.78651 -34.65302 -33.34159 -32.08081 -31.80025 -29.53341 -26.62681 -25.96380 -24.59163 -24.11333 -23.36637 -22.89501 -22.09824 -21.15997 -19.45768 -19.34088 -18.78026 -18.42497 -17.02799 -16.76747 -16.60780 -16.39922 -16.20794 -15.85919 -15.80996 -15.41325 -15.27908 -14.96997 -14.80874 -14.25077 -14.08545 -13.90949 -13.47153 -13.21910 -12.80947 -12.57925 -12.46045 -12.36328 -12.24784 -12.08397 -11.88765 -11.81651 -11.81263 -11.59218 -11.28944 -11.20659 -10.63940 -10.18314 -10.00757 -9.16025 -5.11818 0.00381 0.11233 0.81200 1.15236 1.51482 1.70256 1.77886 1.81968 1.92520 2.73968 3.01736 3.08314 3.32010 3.36450 3.47714 3.52817 3.63831 3.71637 3.79623 3.83547 3.94524 4.02410 4.05105 4.14921 4.18213 4.21308 4.33751 4.41364 4.45916 4.50389 4.60895 4.71008 4.81478 4.82812 4.88750 4.90474 5.05255 5.08678 5.13848 5.23985 5.72324 5.94524 6.03175 6.34802 6.53390 7.23928 7.75931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.548 6.548 2 C -0.050 4.050 3 Si 0.680 3.320 4 C -0.248 4.248 5 C 0.193 3.807 6 N -0.561 5.561 7 C 0.568 3.432 8 N -0.691 5.691 9 C 0.159 3.841 10 H 0.093 0.907 11 C -0.127 4.127 12 C -0.113 4.113 13 C -0.004 4.004 14 H 0.110 0.890 15 C 0.187 3.813 16 N -0.291 5.291 17 N -0.296 5.296 18 C 0.154 3.846 19 N -0.581 5.581 20 C -0.105 4.105 21 C -0.127 4.127 22 N -0.567 5.567 23 C 0.227 3.773 24 H 0.384 0.616 25 H 0.076 0.924 26 H -0.249 1.249 27 H -0.253 1.253 28 H 0.157 0.843 29 H 0.415 0.585 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.223 0.777 35 H 0.429 0.571 36 H 0.081 0.919 37 H 0.067 0.933 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.655 4.129 -7.610 8.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.354 6.354 2 C -0.163 4.163 3 Si 0.582 3.418 4 C -0.256 4.256 5 C 0.026 3.974 6 N -0.283 5.283 7 C 0.212 3.788 8 N -0.327 5.327 9 C 0.054 3.946 10 H 0.111 0.889 11 C -0.166 4.166 12 C -0.152 4.152 13 C -0.025 4.025 14 H 0.128 0.872 15 C -0.082 4.082 16 N -0.131 5.131 17 N -0.135 5.135 18 C -0.135 4.135 19 N -0.194 5.194 20 C -0.144 4.144 21 C -0.165 4.165 22 N -0.288 5.288 23 C 0.059 3.941 24 H 0.232 0.768 25 H 0.094 0.906 26 H -0.174 1.174 27 H -0.178 1.178 28 H 0.174 0.826 29 H 0.253 0.747 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.239 0.761 35 H 0.268 0.732 36 H 0.099 0.901 37 H 0.085 0.915 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 0.552 3.006 -4.260 5.243 hybrid contribution -0.458 0.922 -2.012 2.260 sum 0.094 3.928 -6.272 7.401 Atomic orbital electron populations 1.86496 1.17256 1.81828 1.49831 1.24303 0.85641 1.09951 0.96376 0.95011 0.80898 0.78184 0.87746 1.20719 1.07903 0.97060 0.99940 1.22599 0.89197 0.98832 0.86788 1.67889 1.27381 1.08462 1.24612 1.19369 0.87073 0.85447 0.86926 1.44243 1.58649 1.12103 1.17702 1.21032 0.92057 0.94203 0.87303 0.88944 1.21927 0.98276 1.00115 0.96315 1.21589 0.98474 0.97608 0.97513 1.19791 0.94964 0.96550 0.91165 0.87150 1.24850 1.01451 0.84504 0.97432 1.74311 1.13158 1.22915 1.02756 1.74307 1.15252 0.98228 1.25721 1.26583 1.01057 1.02436 0.83461 1.44133 1.43484 1.14904 1.16871 1.21527 0.97260 0.99899 0.95705 1.21828 0.98788 0.98167 0.97713 1.68001 1.16477 1.39985 1.04369 1.22841 0.88806 0.90845 0.91625 0.76836 0.90602 1.17363 1.17756 0.82631 0.74681 0.90811 0.91077 0.90759 0.91680 0.76113 0.73156 0.90075 0.91469 0.90474 0.90421 0.81057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.67 12.82 -35.23 -0.45 0.22 16 2 C -0.05 0.08 2.82 36.01 0.10 0.18 16 3 Si 0.68 -1.70 29.91 -169.99 -5.08 -6.78 16 4 C -0.25 -0.34 5.40 -104.35 -0.56 -0.91 16 5 C 0.19 0.43 9.92 -17.23 -0.17 0.26 16 6 N -0.56 -1.70 9.20 -13.93 -0.13 -1.83 16 7 C 0.57 1.63 8.40 -322.81 -2.71 -1.08 16 8 N -0.69 -0.18 5.22 -55.80 -0.29 -0.48 16 9 C 0.16 -0.21 2.45 -67.93 -0.17 -0.38 16 10 H 0.09 -0.02 7.50 -51.93 -0.39 -0.41 16 11 C -0.13 0.18 5.51 -26.73 -0.15 0.03 16 12 C -0.11 0.28 4.98 -26.73 -0.13 0.15 16 13 C 0.00 0.01 2.66 -91.77 -0.24 -0.24 16 14 H 0.11 -0.13 8.14 -51.93 -0.42 -0.55 16 15 C 0.19 0.18 6.98 -155.00 -1.08 -0.90 16 16 N -0.29 -1.48 12.21 32.79 0.40 -1.08 16 17 N -0.30 -1.45 12.21 29.69 0.36 -1.09 16 18 C 0.15 0.01 13.19 -89.95 -1.19 -1.17 16 19 N -0.58 0.87 5.96 -11.37 -0.07 0.80 16 20 C -0.10 0.24 5.19 -26.70 -0.14 0.10 16 21 C -0.13 0.34 5.39 -26.70 -0.14 0.19 16 22 N -0.57 -1.86 10.46 -13.93 -0.15 -2.00 16 23 C 0.23 0.41 10.99 -17.22 -0.19 0.22 16 24 H 0.38 -2.37 8.74 45.56 0.40 -1.97 16 25 H 0.08 -0.26 7.96 -51.93 -0.41 -0.67 16 26 H -0.25 -0.14 7.07 56.52 0.40 0.26 16 27 H -0.25 0.02 7.11 56.52 0.40 0.42 16 28 H 0.16 0.13 5.04 -52.48 -0.26 -0.13 16 29 H 0.42 -0.36 8.72 -40.82 -0.36 -0.71 16 30 H 0.07 0.03 8.14 -51.93 -0.42 -0.39 16 31 H 0.07 -0.10 8.14 -51.93 -0.42 -0.52 16 32 H 0.07 -0.15 8.14 -51.93 -0.42 -0.57 16 33 H 0.06 -0.22 7.52 -51.94 -0.39 -0.61 16 34 H 0.22 -0.94 8.06 -52.48 -0.42 -1.37 16 35 H 0.43 -2.09 8.29 -40.82 -0.34 -2.43 16 36 H 0.08 -0.11 8.14 -51.93 -0.42 -0.53 16 37 H 0.07 -0.17 8.14 -51.93 -0.42 -0.59 16 38 H 0.08 -0.24 8.14 -51.93 -0.42 -0.66 16 39 H 0.08 -0.19 8.14 -51.93 -0.42 -0.62 16 40 H 0.17 -0.10 8.06 -52.49 -0.42 -0.52 16 LS Contribution 331.09 15.07 4.99 4.99 Total: 0.00 -10.99 331.09 -12.37 -23.36 By element: Atomic # 1 Polarization: -7.39 SS G_CDS: -5.18 Total: -12.57 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: -6.78 Total: -3.54 kcal Atomic # 7 Polarization: -5.80 SS G_CDS: 0.13 Total: -5.67 kcal Atomic # 8 Polarization: 0.67 SS G_CDS: -0.45 Total: 0.22 kcal Atomic # 14 Polarization: -1.70 SS G_CDS: -5.08 Total: -6.78 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -10.99 -12.37 -23.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16607478_12175864.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.136 kcal (2) G-P(sol) polarization free energy of solvation -10.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds