Wall clock time and date at job start Mon Mar 8 2021 08:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86300 * 109.47509 * 2 1 4 4 C 1.50701 * 109.46878 * 119.99874 * 2 1 3 5 5 C 1.38602 * 120.72503 * 244.71971 * 4 2 1 6 6 N 1.32269 * 119.19882 * 179.71959 * 5 4 2 7 7 C 1.32494 * 120.74143 * 0.56689 * 6 5 4 8 8 N 1.38406 * 119.21663 * 179.73271 * 7 6 5 9 9 C 1.46493 * 120.00140 * 359.97233 * 8 7 6 10 10 H 1.08998 * 109.47650 * 325.00681 * 9 8 7 11 11 C 1.53004 * 109.46908 * 85.00459 * 9 8 7 12 12 C 1.53007 * 109.46974 * 180.02562 * 11 9 8 13 13 C 1.52999 * 109.47348 * 299.99708 * 12 11 9 14 14 H 1.08998 * 109.47160 * 300.00774 * 13 12 11 15 15 C 1.50697 * 109.47331 * 180.02562 * 13 12 11 16 16 N 1.30518 * 126.34261 * 145.02516 * 15 13 12 17 17 N 1.28598 * 109.66974 * 179.97438 * 16 15 13 18 18 C 1.30516 * 109.67344 * 359.97438 * 17 16 15 19 19 N 1.35485 * 126.34767 * 324.71927 * 15 13 12 20 20 C 1.53004 * 109.46844 * 60.00212 * 13 12 11 21 21 C 1.52999 * 109.47387 * 205.00150 * 9 8 7 22 22 N 1.32492 * 121.56442 * 359.70597 * 7 6 5 23 23 C 1.32274 * 120.74248 * 0.02562 * 22 7 6 24 24 H 0.96700 * 113.99509 * 59.99951 * 1 2 3 25 25 H 1.09001 * 109.47395 * 239.99652 * 2 1 3 26 26 H 1.48502 * 109.99691 * 59.99915 * 3 2 1 27 27 H 1.48495 * 109.99988 * 181.31552 * 3 2 1 28 28 H 1.08003 * 120.39418 * 359.97438 * 5 4 2 29 29 H 0.97005 * 119.99817 * 179.97438 * 8 7 6 30 30 H 1.09000 * 109.47213 * 300.00110 * 11 9 8 31 31 H 1.09003 * 109.47012 * 60.00390 * 11 9 8 32 32 H 1.09001 * 109.46424 * 180.02562 * 12 11 9 33 33 H 1.08989 * 109.47079 * 60.00415 * 12 11 9 34 34 H 1.08004 * 126.34963 * 180.02562 * 18 17 16 35 35 H 0.97009 * 126.98034 * 0.02798 * 19 15 13 36 36 H 1.09000 * 109.47213 * 179.97438 * 20 13 12 37 37 H 1.09003 * 109.47193 * 60.00156 * 20 13 12 38 38 H 1.09003 * 109.47615 * 300.00273 * 21 9 8 39 39 H 1.09001 * 109.47101 * 60.00787 * 21 9 8 40 40 H 1.07997 * 120.40449 * 180.02562 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 2.6470 -0.0264 2.2005 6 7 3.0687 -0.6785 3.2712 7 6 2.8235 -1.9725 3.4164 8 7 3.2843 -2.6248 4.5467 9 6 4.0340 -1.8850 5.5649 10 1 4.6486 -1.1248 5.0829 11 6 3.0558 -1.2129 6.5306 12 6 3.8388 -0.4397 7.5937 13 6 4.7375 -1.4056 8.3684 14 1 4.1232 -2.1658 8.8507 15 6 5.5082 -0.6441 9.4158 16 7 5.8407 -1.0795 10.6005 17 7 6.4933 -0.1672 11.2295 18 6 6.6072 0.8913 10.4745 19 7 5.9893 0.6171 9.3002 20 6 5.7157 -2.0776 7.4027 21 6 4.9323 -2.8513 6.3395 22 7 2.1472 -2.6566 2.5054 23 6 1.6929 -2.0635 1.4138 24 1 -0.3932 0.4417 -0.7651 25 1 1.7924 -0.5139 -0.8899 26 1 1.5616 2.4678 1.2085 27 1 3.5347 1.7701 -0.0320 28 1 2.8543 1.0273 2.0854 29 1 3.1109 -3.5719 4.6647 30 1 2.4158 -0.5244 5.9788 31 1 2.4412 -1.9731 7.0127 32 1 3.1418 0.0387 8.2818 33 1 4.4530 0.3205 7.1112 34 1 7.1051 1.8134 10.7358 35 1 5.9067 1.2052 8.5331 36 1 6.3564 -2.7654 7.9547 37 1 6.3301 -1.3174 6.9203 38 1 4.3177 -3.6116 6.8217 39 1 5.6293 -3.3301 5.6516 40 1 1.1419 -2.6264 0.6750 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_16607478_12175864.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:30:46 Heat of formation + Delta-G solvation = 101.375099 kcal Electronic energy + Delta-G solvation = -24204.020527 eV Core-core repulsion = 20635.786788 eV Total energy + Delta-G solvation = -3568.233739 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 303.144 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.18206 -42.23810 -40.08300 -37.92973 -36.52834 -34.90189 -34.69892 -33.34995 -31.97435 -31.81579 -29.54567 -26.60329 -26.06033 -24.57577 -24.02932 -23.34902 -22.93756 -22.09268 -21.07304 -19.49197 -19.31544 -18.82243 -18.28535 -17.01665 -16.79612 -16.58841 -16.42215 -16.25429 -15.86717 -15.77149 -15.30343 -15.18118 -14.90541 -14.82390 -14.18856 -14.05437 -13.83024 -13.35787 -13.18185 -12.85147 -12.51418 -12.43330 -12.26869 -12.24654 -12.04095 -12.00406 -11.86061 -11.78382 -11.56494 -11.31594 -11.17876 -10.59316 -10.28312 -10.02430 -9.20057 -4.94159 -0.10852 0.00746 0.82598 1.31821 1.66311 1.69726 1.81814 1.86824 1.96208 2.64690 2.94819 3.11754 3.42609 3.46901 3.48272 3.59920 3.63991 3.81159 3.89464 3.95293 4.06596 4.10461 4.16744 4.26589 4.27965 4.34518 4.39405 4.46059 4.52829 4.57838 4.71130 4.72257 4.91741 4.95249 4.99085 5.01764 5.10234 5.12730 5.20608 5.30575 5.65898 5.90648 6.20993 6.30586 6.96277 7.14470 7.67564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.566 6.566 2 C -0.055 4.055 3 Si 0.769 3.231 4 C -0.254 4.254 5 C 0.176 3.824 6 N -0.574 5.574 7 C 0.553 3.447 8 N -0.686 5.686 9 C 0.163 3.837 10 H 0.084 0.916 11 C -0.120 4.120 12 C -0.104 4.104 13 C 0.002 3.998 14 H 0.105 0.895 15 C 0.193 3.807 16 N -0.343 5.343 17 N -0.355 5.355 18 C 0.170 3.830 19 N -0.568 5.568 20 C -0.098 4.098 21 C -0.117 4.117 22 N -0.586 5.586 23 C 0.218 3.782 24 H 0.405 0.595 25 H 0.101 0.899 26 H -0.294 1.294 27 H -0.286 1.286 28 H 0.162 0.838 29 H 0.420 0.580 30 H 0.055 0.945 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.262 0.738 35 H 0.446 0.554 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.755 4.812 -9.046 10.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.376 6.376 2 C -0.166 4.166 3 Si 0.675 3.325 4 C -0.262 4.262 5 C 0.009 3.991 6 N -0.297 5.297 7 C 0.196 3.804 8 N -0.322 5.322 9 C 0.058 3.942 10 H 0.102 0.898 11 C -0.159 4.159 12 C -0.143 4.143 13 C -0.018 4.018 14 H 0.123 0.877 15 C -0.078 4.078 16 N -0.183 5.183 17 N -0.193 5.193 18 C -0.120 4.120 19 N -0.183 5.183 20 C -0.137 4.137 21 C -0.156 4.156 22 N -0.308 5.308 23 C 0.050 3.950 24 H 0.257 0.743 25 H 0.119 0.881 26 H -0.222 1.222 27 H -0.213 1.213 28 H 0.179 0.821 29 H 0.258 0.742 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.278 0.722 35 H 0.289 0.711 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.102 0.898 39 H 0.099 0.901 40 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 0.433 3.688 -5.733 6.831 hybrid contribution -0.438 0.771 -1.581 1.812 sum -0.005 4.459 -7.314 8.566 Atomic orbital electron populations 1.86442 1.17196 1.82423 1.51561 1.24433 0.85829 1.10456 0.95910 0.94087 0.77551 0.75673 0.85185 1.21061 1.07309 0.97150 1.00704 1.22863 0.89775 0.99292 0.87178 1.67882 1.27961 1.08684 1.25158 1.19636 0.87495 0.85655 0.87602 1.44340 1.58278 1.12346 1.17268 1.21043 0.91934 0.94237 0.86937 0.89800 1.21833 0.98092 0.99773 0.96247 1.21511 0.98274 0.97476 0.96992 1.19803 0.94894 0.96417 0.90732 0.87711 1.25121 1.00699 0.85240 0.96758 1.74193 1.15049 1.24419 1.04660 1.74192 1.17442 0.99893 1.27804 1.27304 0.99395 1.02401 0.82925 1.44079 1.42627 1.14362 1.17199 1.21460 0.97004 0.99869 0.95404 1.21749 0.98550 0.97864 0.97390 1.68031 1.17111 1.40556 1.05074 1.23267 0.88713 0.91363 0.91675 0.74319 0.88125 1.22174 1.21307 0.82142 0.74175 0.92572 0.91088 0.90940 0.90274 0.72210 0.71098 0.90895 0.90764 0.89792 0.90132 0.79063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.57 2.05 12.82 -148.98 -1.91 0.14 16 2 C -0.05 0.22 2.82 71.24 0.20 0.42 16 3 Si 0.77 -4.02 29.91 68.60 2.05 -1.97 16 4 C -0.25 -0.72 5.40 -19.69 -0.11 -0.83 16 5 C 0.18 0.93 9.92 84.71 0.84 1.77 16 6 N -0.57 -4.07 9.20 -197.99 -1.82 -5.90 16 7 C 0.55 3.65 8.40 261.49 2.20 5.84 16 8 N -0.69 -0.80 5.22 -330.45 -1.73 -2.53 16 9 C 0.16 -0.38 2.45 44.99 0.11 -0.27 16 10 H 0.08 -0.01 7.50 -2.39 -0.02 -0.03 16 11 C -0.12 0.29 5.51 30.60 0.17 0.46 16 12 C -0.10 0.53 4.98 30.60 0.15 0.68 16 13 C 0.00 -0.01 2.66 -11.54 -0.03 -0.04 16 14 H 0.10 -0.16 8.14 -2.39 -0.02 -0.18 16 15 C 0.19 0.44 6.98 137.98 0.96 1.41 16 16 N -0.34 -3.96 12.21 -50.16 -0.61 -4.57 16 17 N -0.35 -3.84 12.21 -59.99 -0.73 -4.58 16 18 C 0.17 -0.06 13.19 180.11 2.37 2.32 16 19 N -0.57 2.07 5.96 -189.87 -1.13 0.93 16 20 C -0.10 0.45 5.19 30.62 0.16 0.60 16 21 C -0.12 0.63 5.39 30.61 0.17 0.80 16 22 N -0.59 -4.19 10.46 -197.98 -2.07 -6.26 16 23 C 0.22 0.81 10.99 84.72 0.93 1.74 16 24 H 0.41 -5.69 8.74 -74.06 -0.65 -6.34 16 25 H 0.10 -0.89 7.96 -2.39 -0.02 -0.90 16 26 H -0.29 -0.63 7.07 99.48 0.70 0.07 16 27 H -0.29 -0.04 7.11 99.48 0.71 0.66 16 28 H 0.16 0.46 5.04 -2.91 -0.01 0.45 16 29 H 0.42 -0.50 8.72 -92.70 -0.81 -1.31 16 30 H 0.06 0.10 8.14 -2.39 -0.02 0.08 16 31 H 0.07 -0.16 8.14 -2.39 -0.02 -0.18 16 32 H 0.07 -0.30 8.14 -2.39 -0.02 -0.32 16 33 H 0.08 -0.61 7.52 -2.39 -0.02 -0.63 16 34 H 0.26 -2.71 8.06 -2.91 -0.02 -2.73 16 35 H 0.45 -4.97 8.29 -92.70 -0.77 -5.74 16 36 H 0.07 -0.16 8.14 -2.39 -0.02 -0.18 16 37 H 0.07 -0.42 8.14 -2.39 -0.02 -0.44 16 38 H 0.08 -0.53 8.14 -2.39 -0.02 -0.55 16 39 H 0.08 -0.43 8.14 -2.39 -0.02 -0.45 16 40 H 0.19 -0.33 8.06 -2.91 -0.02 -0.35 16 Total: 0.00 -27.97 331.09 -0.91 -28.88 By element: Atomic # 1 Polarization: -17.98 SS G_CDS: -1.09 Total: -19.06 kcal Atomic # 6 Polarization: 6.79 SS G_CDS: 8.13 Total: 14.91 kcal Atomic # 7 Polarization: -14.81 SS G_CDS: -8.10 Total: -22.90 kcal Atomic # 8 Polarization: 2.05 SS G_CDS: -1.91 Total: 0.14 kcal Atomic # 14 Polarization: -4.02 SS G_CDS: 2.05 Total: -1.97 kcal Total: -27.97 -0.91 -28.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16607478_12175864.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.257 kcal (2) G-P(sol) polarization free energy of solvation -27.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds