Wall clock time and date at job start Mon Mar 8 2021 08:30:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42906 * 1 3 3 Si 1.86296 * 109.47107 * 2 1 4 4 C 1.50699 * 109.46661 * 240.00083 * 2 1 3 5 5 C 1.38835 * 120.33791 * 299.99576 * 4 2 1 6 6 C 1.38343 * 118.50488 * 179.74959 * 5 4 2 7 7 C 1.39096 * 119.10211 * 0.25387 * 6 5 4 8 8 N 1.39003 * 119.70605 * 179.97438 * 7 6 5 9 9 C 1.46495 * 120.00315 * 359.97438 * 8 7 6 10 10 H 1.09003 * 109.47108 * 34.99948 * 9 8 7 11 11 C 1.52997 * 109.47133 * 155.00065 * 9 8 7 12 12 C 1.53000 * 109.47157 * 180.02562 * 11 9 8 13 13 C 1.53001 * 109.47365 * 300.00333 * 12 11 9 14 14 H 1.09003 * 109.46607 * 299.99842 * 13 12 11 15 15 C 1.50696 * 109.47224 * 179.97438 * 13 12 11 16 16 N 1.30527 * 126.34371 * 94.68768 * 15 13 12 17 17 N 1.28597 * 109.67055 * 179.82246 * 16 15 13 18 18 C 1.30525 * 109.67591 * 0.45161 * 17 16 15 19 19 N 1.35492 * 107.30325 * 359.72656 * 18 17 16 20 20 C 1.52997 * 109.47255 * 59.99727 * 13 12 11 21 21 C 1.53000 * 109.47157 * 300.00400 * 20 13 12 22 22 N 1.32426 * 120.58783 * 0.02562 * 7 6 5 23 23 C 1.31947 * 121.62326 * 359.97399 * 22 7 6 24 24 H 0.96693 * 113.99925 * 59.99540 * 1 2 3 25 25 H 1.09005 * 109.47180 * 120.00028 * 2 1 3 26 26 H 1.48498 * 110.00011 * 60.00245 * 3 2 1 27 27 H 1.48496 * 109.99868 * 181.32084 * 3 2 1 28 28 H 1.08002 * 120.74965 * 0.03196 * 5 4 2 29 29 H 1.07998 * 120.44924 * 180.23263 * 6 5 4 30 30 H 0.96999 * 119.99590 * 180.02562 * 8 7 6 31 31 H 1.08994 * 109.47348 * 299.99849 * 11 9 8 32 32 H 1.08994 * 109.47039 * 60.00190 * 11 9 8 33 33 H 1.09003 * 109.47129 * 59.99856 * 12 11 9 34 34 H 1.09001 * 109.47329 * 179.97438 * 12 11 9 35 35 H 1.07995 * 126.35137 * 179.72876 * 18 17 16 36 36 H 0.96997 * 126.98338 * 179.97438 * 19 18 17 37 37 H 1.08995 * 109.47411 * 59.99858 * 20 13 12 38 38 H 1.08996 * 109.47640 * 180.02562 * 20 13 12 39 39 H 1.09003 * 109.47129 * 300.00144 * 21 20 13 40 40 H 1.09001 * 109.47329 * 180.02562 * 21 20 13 41 41 H 1.07995 * 119.57486 * 180.02562 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 1.6002 -2.0395 -1.4571 6 6 2.0775 -2.6529 -2.6016 7 6 2.8729 -1.9231 -3.4788 8 7 3.3596 -2.5272 -4.6322 9 6 3.0349 -3.9265 -4.9192 10 1 2.0246 -4.1436 -4.5723 11 6 3.1198 -4.1709 -6.4272 12 6 2.7801 -5.6322 -6.7270 13 6 3.7736 -6.5452 -6.0056 14 1 4.7840 -6.3286 -6.3525 15 6 3.4385 -7.9846 -6.3004 16 7 3.9627 -8.7241 -7.2396 17 7 3.4472 -9.9016 -7.2018 18 6 2.5638 -9.9640 -6.2429 19 7 2.5331 -8.7492 -5.6436 20 6 3.6887 -6.3009 -4.4977 21 6 4.0284 -4.8395 -4.1979 22 7 3.1713 -0.6582 -3.2244 23 6 2.7302 -0.0477 -2.1410 24 1 -0.3933 0.4417 -0.7650 25 1 1.7924 -0.5139 0.8900 26 1 1.5616 2.4678 1.2085 27 1 3.5346 1.7702 -0.0322 28 1 0.9801 -2.5811 -0.7581 29 1 1.8361 -3.6846 -2.8109 30 1 3.9150 -2.0223 -5.2467 31 1 2.4117 -3.5209 -6.9410 32 1 4.1301 -3.9538 -6.7740 33 1 1.7697 -5.8489 -6.3801 34 1 2.8401 -5.8062 -7.8013 35 1 1.9678 -10.8243 -5.9766 36 1 1.9759 -8.4812 -4.8963 37 1 2.6783 -6.5174 -4.1508 38 1 4.3967 -6.9509 -3.9838 39 1 5.0388 -4.6229 -4.5447 40 1 3.9684 -4.6655 -3.1235 41 1 2.9935 0.9850 -1.9666 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_16607478_13915762.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:30:51 Heat of formation + Delta-G solvation = 82.625250 kcal Electronic energy + Delta-G solvation = -24018.982345 eV Core-core repulsion = 20515.361463 eV Total energy + Delta-G solvation = -3503.620883 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 302.148 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.17109 -41.56686 -40.14081 -37.98781 -36.41244 -34.69770 -33.57783 -32.78877 -32.17406 -31.27031 -29.43510 -26.39183 -25.07818 -24.56283 -24.09237 -23.38498 -22.58266 -22.02852 -21.16458 -19.44063 -18.74276 -18.53857 -17.75093 -16.89242 -16.63949 -16.56499 -16.40170 -16.11928 -15.93837 -15.70931 -15.51307 -15.12269 -14.82776 -14.29060 -14.26636 -14.10186 -13.91724 -13.55733 -13.45011 -12.83142 -12.65446 -12.52295 -12.42625 -12.27218 -12.06989 -11.99465 -11.86432 -11.70180 -11.34053 -11.17004 -10.77097 -10.42405 -10.41841 -10.23018 -8.76777 -5.05864 0.20080 0.38292 0.76462 1.28418 1.60448 1.70950 1.88438 1.94685 1.96353 2.81649 3.00944 3.27015 3.38965 3.44636 3.54014 3.61022 3.73177 3.74318 3.83330 3.90112 3.93933 4.00929 4.04614 4.08349 4.12202 4.26391 4.28887 4.40255 4.45771 4.48158 4.52362 4.68461 4.70362 4.74754 4.81206 4.84179 4.94941 4.98837 5.05391 5.07282 5.26283 5.46556 5.93484 5.98523 6.46790 6.55555 7.11601 7.71762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.543 6.543 2 C -0.052 4.052 3 Si 0.682 3.318 4 C -0.236 4.236 5 C -0.006 4.006 6 C -0.241 4.241 7 C 0.409 3.591 8 N -0.719 5.719 9 C 0.154 3.846 10 H 0.083 0.917 11 C -0.125 4.125 12 C -0.106 4.106 13 C -0.004 4.004 14 H 0.111 0.889 15 C 0.186 3.814 16 N -0.290 5.290 17 N -0.295 5.295 18 C 0.154 3.846 19 N -0.581 5.581 20 C -0.115 4.115 21 C -0.134 4.134 22 N -0.539 5.539 23 C 0.157 3.843 24 H 0.379 0.621 25 H 0.112 0.888 26 H -0.253 1.253 27 H -0.256 1.256 28 H 0.135 0.865 29 H 0.132 0.868 30 H 0.406 0.594 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.066 0.934 34 H 0.081 0.919 35 H 0.223 0.777 36 H 0.428 0.572 37 H 0.064 0.936 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.735 0.961 1.464 4.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.348 6.348 2 C -0.164 4.164 3 Si 0.584 3.416 4 C -0.241 4.241 5 C -0.031 4.031 6 C -0.266 4.266 7 C 0.174 3.826 8 N -0.351 5.351 9 C 0.048 3.952 10 H 0.101 0.899 11 C -0.163 4.163 12 C -0.145 4.145 13 C -0.024 4.024 14 H 0.129 0.871 15 C -0.084 4.084 16 N -0.131 5.131 17 N -0.135 5.135 18 C -0.135 4.135 19 N -0.194 5.194 20 C -0.154 4.154 21 C -0.173 4.173 22 N -0.256 5.256 23 C -0.001 4.001 24 H 0.226 0.774 25 H 0.129 0.871 26 H -0.178 1.178 27 H -0.181 1.181 28 H 0.153 0.847 29 H 0.150 0.850 30 H 0.243 0.757 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.085 0.915 34 H 0.100 0.900 35 H 0.239 0.761 36 H 0.268 0.732 37 H 0.082 0.918 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.092 0.908 41 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -1.729 1.001 0.502 2.060 hybrid contribution -1.350 -0.612 2.043 2.523 sum -3.079 0.389 2.544 4.013 Atomic orbital electron populations 1.86488 1.17347 1.81662 1.49295 1.24775 0.85006 1.09680 0.96948 0.94837 0.81103 0.78127 0.87525 1.20995 1.05933 0.96666 1.00539 1.21181 0.93836 0.93190 0.94925 1.21459 1.05715 1.01875 0.97514 1.18382 0.89026 0.88422 0.86778 1.44573 1.56272 1.11694 1.22518 1.21047 0.98887 0.79824 0.95429 0.89871 1.21782 1.03647 0.96610 0.94280 1.21536 0.98357 0.93078 1.01558 1.19781 1.02228 0.84099 0.96331 0.87114 1.24853 0.92667 0.97104 0.93739 1.74318 1.22381 0.98254 1.18120 1.74318 1.08896 1.12751 1.17498 1.26595 1.02056 0.90028 0.94789 1.44125 1.33503 1.11790 1.30010 1.21612 1.02275 0.97342 0.94161 1.22037 1.00494 0.93364 1.01435 1.67154 1.27224 1.09211 1.21988 1.22237 0.91426 0.98565 0.87864 0.77425 0.87101 1.17812 1.18084 0.84717 0.84997 0.75741 0.90276 0.90416 0.91482 0.90040 0.76095 0.73202 0.91779 0.90625 0.90602 0.90826 0.82848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.17 12.78 -35.23 -0.45 -0.28 16 2 C -0.05 0.04 2.84 36.01 0.10 0.14 16 3 Si 0.68 -0.90 29.82 -169.99 -5.07 -5.97 16 4 C -0.24 0.02 5.40 -104.46 -0.56 -0.55 16 5 C -0.01 0.00 9.76 -39.32 -0.38 -0.38 16 6 C -0.24 0.13 8.84 -39.22 -0.35 -0.22 16 7 C 0.41 0.22 7.63 -155.01 -1.18 -0.97 16 8 N -0.72 1.17 5.25 -53.94 -0.28 0.89 16 9 C 0.15 -0.56 2.14 -67.93 -0.15 -0.71 16 10 H 0.08 -0.32 6.45 -51.93 -0.33 -0.66 16 11 C -0.13 0.51 5.39 -26.73 -0.14 0.37 16 12 C -0.11 0.38 5.19 -26.73 -0.14 0.24 16 13 C 0.00 0.01 2.66 -91.77 -0.24 -0.23 16 14 H 0.11 -0.25 8.14 -51.93 -0.42 -0.67 16 15 C 0.19 -0.01 6.99 -154.98 -1.08 -1.10 16 16 N -0.29 -1.24 12.21 32.80 0.40 -0.84 16 17 N -0.30 -1.24 12.21 29.69 0.36 -0.88 16 18 C 0.15 -0.11 13.19 -89.94 -1.19 -1.29 16 19 N -0.58 1.48 5.96 -11.36 -0.07 1.42 16 20 C -0.12 0.50 4.97 -26.73 -0.13 0.37 16 21 C -0.13 0.50 5.42 -26.73 -0.14 0.36 16 22 N -0.54 -1.05 10.39 -12.44 -0.13 -1.18 16 23 C 0.16 0.09 9.84 -17.56 -0.17 -0.08 16 24 H 0.38 -1.50 8.70 45.56 0.40 -1.11 16 25 H 0.11 -0.03 7.96 -51.93 -0.41 -0.45 16 26 H -0.25 -0.49 7.11 56.52 0.40 -0.09 16 27 H -0.26 -0.26 7.11 56.52 0.40 0.14 16 28 H 0.13 -0.17 8.06 -52.49 -0.42 -0.60 16 29 H 0.13 -0.33 6.07 -52.49 -0.32 -0.64 16 30 H 0.41 -0.75 8.73 -40.82 -0.36 -1.11 16 31 H 0.08 -0.30 8.14 -51.93 -0.42 -0.72 16 32 H 0.08 -0.32 8.14 -51.93 -0.42 -0.74 16 33 H 0.07 -0.27 8.14 -51.93 -0.42 -0.70 16 34 H 0.08 -0.19 8.14 -51.93 -0.42 -0.61 16 35 H 0.22 -1.11 8.06 -52.49 -0.42 -1.53 16 36 H 0.43 -2.63 8.28 -40.82 -0.34 -2.97 16 37 H 0.06 -0.37 7.52 -51.93 -0.39 -0.76 16 38 H 0.08 -0.28 8.14 -51.93 -0.42 -0.70 16 39 H 0.08 -0.23 8.14 -51.93 -0.42 -0.65 16 40 H 0.07 -0.21 7.66 -51.93 -0.40 -0.61 16 41 H 0.15 -0.20 4.88 -52.49 -0.26 -0.45 16 LS Contribution 332.44 15.07 5.01 5.01 Total: 0.00 -10.10 332.44 -11.40 -21.50 By element: Atomic # 1 Polarization: -10.20 SS G_CDS: -5.41 Total: -15.61 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: -5.77 Total: -4.05 kcal Atomic # 7 Polarization: -0.88 SS G_CDS: 0.28 Total: -0.59 kcal Atomic # 8 Polarization: 0.17 SS G_CDS: -0.45 Total: -0.28 kcal Atomic # 14 Polarization: -0.90 SS G_CDS: -5.07 Total: -5.97 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -10.10 -11.40 -21.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16607478_13915762.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.130 kcal (2) G-P(sol) polarization free energy of solvation -10.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds