Wall clock time and date at job start Mon Mar 8 2021 08:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42906 * 1 3 3 Si 1.86296 * 109.47107 * 2 1 4 4 C 1.50699 * 109.46661 * 240.00083 * 2 1 3 5 5 C 1.38835 * 120.33791 * 299.99576 * 4 2 1 6 6 C 1.38343 * 118.50488 * 179.74959 * 5 4 2 7 7 C 1.39096 * 119.10211 * 0.25387 * 6 5 4 8 8 N 1.39003 * 119.70605 * 179.97438 * 7 6 5 9 9 C 1.46495 * 120.00315 * 359.97438 * 8 7 6 10 10 H 1.09003 * 109.47108 * 34.99948 * 9 8 7 11 11 C 1.52997 * 109.47133 * 155.00065 * 9 8 7 12 12 C 1.53000 * 109.47157 * 180.02562 * 11 9 8 13 13 C 1.53001 * 109.47365 * 300.00333 * 12 11 9 14 14 H 1.09003 * 109.46607 * 299.99842 * 13 12 11 15 15 C 1.50696 * 109.47224 * 179.97438 * 13 12 11 16 16 N 1.30527 * 126.34371 * 94.68768 * 15 13 12 17 17 N 1.28597 * 109.67055 * 179.82246 * 16 15 13 18 18 C 1.30525 * 109.67591 * 0.45161 * 17 16 15 19 19 N 1.35492 * 107.30325 * 359.72656 * 18 17 16 20 20 C 1.52997 * 109.47255 * 59.99727 * 13 12 11 21 21 C 1.53000 * 109.47157 * 300.00400 * 20 13 12 22 22 N 1.32426 * 120.58783 * 0.02562 * 7 6 5 23 23 C 1.31947 * 121.62326 * 359.97399 * 22 7 6 24 24 H 0.96693 * 113.99925 * 59.99540 * 1 2 3 25 25 H 1.09005 * 109.47180 * 120.00028 * 2 1 3 26 26 H 1.48498 * 110.00011 * 60.00245 * 3 2 1 27 27 H 1.48496 * 109.99868 * 181.32084 * 3 2 1 28 28 H 1.08002 * 120.74965 * 0.03196 * 5 4 2 29 29 H 1.07998 * 120.44924 * 180.23263 * 6 5 4 30 30 H 0.96999 * 119.99590 * 180.02562 * 8 7 6 31 31 H 1.08994 * 109.47348 * 299.99849 * 11 9 8 32 32 H 1.08994 * 109.47039 * 60.00190 * 11 9 8 33 33 H 1.09003 * 109.47129 * 59.99856 * 12 11 9 34 34 H 1.09001 * 109.47329 * 179.97438 * 12 11 9 35 35 H 1.07995 * 126.35137 * 179.72876 * 18 17 16 36 36 H 0.96997 * 126.98338 * 179.97438 * 19 18 17 37 37 H 1.08995 * 109.47411 * 59.99858 * 20 13 12 38 38 H 1.08996 * 109.47640 * 180.02562 * 20 13 12 39 39 H 1.09003 * 109.47129 * 300.00144 * 21 20 13 40 40 H 1.09001 * 109.47329 * 180.02562 * 21 20 13 41 41 H 1.07995 * 119.57486 * 180.02562 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 1.6002 -2.0395 -1.4571 6 6 2.0775 -2.6529 -2.6016 7 6 2.8729 -1.9231 -3.4788 8 7 3.3596 -2.5272 -4.6322 9 6 3.0349 -3.9265 -4.9192 10 1 2.0246 -4.1436 -4.5723 11 6 3.1198 -4.1709 -6.4272 12 6 2.7801 -5.6322 -6.7270 13 6 3.7736 -6.5452 -6.0056 14 1 4.7840 -6.3286 -6.3525 15 6 3.4385 -7.9846 -6.3004 16 7 3.9627 -8.7241 -7.2396 17 7 3.4472 -9.9016 -7.2018 18 6 2.5638 -9.9640 -6.2429 19 7 2.5331 -8.7492 -5.6436 20 6 3.6887 -6.3009 -4.4977 21 6 4.0284 -4.8395 -4.1979 22 7 3.1713 -0.6582 -3.2244 23 6 2.7302 -0.0477 -2.1410 24 1 -0.3933 0.4417 -0.7650 25 1 1.7924 -0.5139 0.8900 26 1 1.5616 2.4678 1.2085 27 1 3.5346 1.7702 -0.0322 28 1 0.9801 -2.5811 -0.7581 29 1 1.8361 -3.6846 -2.8109 30 1 3.9150 -2.0223 -5.2467 31 1 2.4117 -3.5209 -6.9410 32 1 4.1301 -3.9538 -6.7740 33 1 1.7697 -5.8489 -6.3801 34 1 2.8401 -5.8062 -7.8013 35 1 1.9678 -10.8243 -5.9766 36 1 1.9759 -8.4812 -4.8963 37 1 2.6783 -6.5174 -4.1508 38 1 4.3967 -6.9509 -3.9838 39 1 5.0388 -4.6229 -4.5447 40 1 3.9684 -4.6655 -3.1235 41 1 2.9935 0.9850 -1.9666 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_16607478_13915762.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:30:50 Heat of formation + Delta-G solvation = 82.433452 kcal Electronic energy + Delta-G solvation = -24018.990662 eV Core-core repulsion = 20515.361463 eV Total energy + Delta-G solvation = -3503.629200 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 302.148 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.14148 -41.48236 -39.93783 -37.91063 -36.28508 -34.64620 -33.51809 -32.69689 -31.89954 -31.20331 -29.32716 -26.31908 -24.96832 -24.46659 -23.88319 -23.25788 -22.52861 -21.90025 -20.91057 -19.30319 -18.63075 -18.45947 -17.63466 -16.85719 -16.52575 -16.48415 -16.29044 -16.03444 -15.80706 -15.50746 -15.32783 -14.96676 -14.67980 -14.32710 -14.05888 -14.00356 -13.71337 -13.39091 -13.27781 -12.78341 -12.49242 -12.33850 -12.19402 -12.14871 -12.09124 -11.85412 -11.79445 -11.51817 -11.26422 -11.01995 -10.71772 -10.39263 -10.36623 -10.24578 -8.66468 -4.98850 0.25152 0.43115 0.86699 1.35105 1.63582 1.85684 1.89873 1.97466 2.11113 2.86205 3.17596 3.51880 3.58197 3.65772 3.66562 3.80675 3.84678 3.97400 4.04012 4.10657 4.14084 4.19641 4.30032 4.32220 4.40955 4.41422 4.44058 4.50293 4.54896 4.71820 4.75545 4.79027 4.97084 5.00697 5.04593 5.05334 5.11870 5.16986 5.26144 5.29506 5.38392 5.57116 6.07210 6.26921 6.57173 6.80680 7.17860 7.71749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.556 6.556 2 C -0.051 4.051 3 Si 0.762 3.238 4 C -0.238 4.238 5 C -0.012 4.012 6 C -0.240 4.240 7 C 0.397 3.603 8 N -0.717 5.717 9 C 0.157 3.843 10 H 0.094 0.906 11 C -0.118 4.118 12 C -0.099 4.099 13 C 0.001 3.999 14 H 0.099 0.901 15 C 0.193 3.807 16 N -0.348 5.348 17 N -0.357 5.357 18 C 0.170 3.830 19 N -0.566 5.566 20 C -0.106 4.106 21 C -0.128 4.128 22 N -0.567 5.567 23 C 0.145 3.855 24 H 0.394 0.606 25 H 0.107 0.893 26 H -0.298 1.298 27 H -0.288 1.288 28 H 0.145 0.855 29 H 0.153 0.847 30 H 0.406 0.594 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.066 0.934 35 H 0.261 0.739 36 H 0.447 0.553 37 H 0.087 0.913 38 H 0.071 0.929 39 H 0.066 0.934 40 H 0.070 0.930 41 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.133 0.542 2.197 5.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.364 6.364 2 C -0.163 4.163 3 Si 0.669 3.331 4 C -0.244 4.244 5 C -0.038 4.038 6 C -0.264 4.264 7 C 0.161 3.839 8 N -0.348 5.348 9 C 0.052 3.948 10 H 0.112 0.888 11 C -0.156 4.156 12 C -0.138 4.138 13 C -0.020 4.020 14 H 0.117 0.883 15 C -0.078 4.078 16 N -0.187 5.187 17 N -0.195 5.195 18 C -0.121 4.121 19 N -0.181 5.181 20 C -0.145 4.145 21 C -0.167 4.167 22 N -0.285 5.285 23 C -0.012 4.012 24 H 0.244 0.756 25 H 0.125 0.875 26 H -0.226 1.226 27 H -0.215 1.215 28 H 0.163 0.837 29 H 0.170 0.830 30 H 0.242 0.758 31 H 0.098 0.902 32 H 0.094 0.906 33 H 0.098 0.902 34 H 0.085 0.915 35 H 0.277 0.723 36 H 0.291 0.709 37 H 0.105 0.895 38 H 0.090 0.910 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -3.148 0.571 1.214 3.422 hybrid contribution -0.925 -0.482 1.849 2.123 sum -4.073 0.089 3.063 5.097 Atomic orbital electron populations 1.86450 1.17348 1.82070 1.50502 1.24784 0.85070 1.09836 0.96606 0.93869 0.77917 0.76147 0.85128 1.21024 1.05888 0.96970 1.00474 1.21391 0.93926 0.93211 0.95281 1.21664 1.05041 1.02703 0.97024 1.18642 0.89400 0.88320 0.87539 1.44690 1.55866 1.12296 1.21908 1.21119 0.99339 0.78812 0.95527 0.88831 1.21703 1.03628 0.96197 0.94068 1.21459 0.98757 0.93044 1.00559 1.19827 1.01857 0.82752 0.97565 0.88257 1.25180 0.92141 0.97698 0.92747 1.74195 1.24645 0.99172 1.20712 1.74196 1.11454 1.13484 1.20414 1.27294 1.00489 0.91225 0.93077 1.44044 1.33029 1.10925 1.30109 1.21555 1.03556 0.96715 0.92678 1.21961 1.00037 0.93673 1.01063 1.67146 1.28282 1.10231 1.22814 1.22434 0.91720 0.99173 0.87910 0.75618 0.87548 1.22557 1.21521 0.83684 0.82966 0.75838 0.90175 0.90590 0.90195 0.91540 0.72287 0.70936 0.89462 0.91032 0.91507 0.91148 0.81932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.71 12.78 -148.98 -1.90 -1.20 16 2 C -0.05 0.08 2.84 71.24 0.20 0.28 16 3 Si 0.76 -1.68 29.82 68.60 2.05 0.37 16 4 C -0.24 0.11 5.40 -19.76 -0.11 0.00 16 5 C -0.01 0.02 9.76 22.44 0.22 0.24 16 6 C -0.24 0.54 8.84 22.50 0.20 0.74 16 7 C 0.40 0.25 7.63 133.05 1.02 1.27 16 8 N -0.72 2.64 5.25 -324.56 -1.70 0.94 16 9 C 0.16 -1.32 2.14 44.99 0.10 -1.22 16 10 H 0.09 -0.94 6.45 -2.39 -0.02 -0.96 16 11 C -0.12 1.03 5.39 30.59 0.16 1.19 16 12 C -0.10 0.76 5.19 30.59 0.16 0.92 16 13 C 0.00 -0.01 2.66 -11.54 -0.03 -0.04 16 14 H 0.10 -0.35 8.14 -2.39 -0.02 -0.37 16 15 C 0.19 -0.02 6.99 137.97 0.96 0.94 16 16 N -0.35 -3.47 12.21 -50.15 -0.61 -4.08 16 17 N -0.36 -3.36 12.21 -59.99 -0.73 -4.09 16 18 C 0.17 -0.37 13.19 180.11 2.38 2.01 16 19 N -0.57 3.60 5.96 -189.86 -1.13 2.47 16 20 C -0.11 1.07 4.97 30.59 0.15 1.22 16 21 C -0.13 1.07 5.42 30.59 0.17 1.24 16 22 N -0.57 -2.32 10.39 -193.26 -2.01 -4.33 16 23 C 0.14 0.19 9.84 84.64 0.83 1.02 16 24 H 0.39 -3.47 8.70 -74.06 -0.64 -4.11 16 25 H 0.11 -0.07 7.96 -2.38 -0.02 -0.09 16 26 H -0.30 -1.54 7.11 99.48 0.71 -0.83 16 27 H -0.29 -0.87 7.11 99.48 0.71 -0.16 16 28 H 0.15 -0.56 8.06 -2.91 -0.02 -0.59 16 29 H 0.15 -1.09 6.07 -2.91 -0.02 -1.11 16 30 H 0.41 -1.45 8.73 -92.71 -0.81 -2.26 16 31 H 0.08 -0.66 8.14 -2.39 -0.02 -0.68 16 32 H 0.08 -0.61 8.14 -2.39 -0.02 -0.63 16 33 H 0.08 -0.80 8.14 -2.39 -0.02 -0.82 16 34 H 0.07 -0.27 8.14 -2.39 -0.02 -0.29 16 35 H 0.26 -3.13 8.06 -2.91 -0.02 -3.16 16 36 H 0.45 -6.57 8.28 -92.71 -0.77 -7.33 16 37 H 0.09 -1.26 7.52 -2.39 -0.02 -1.27 16 38 H 0.07 -0.60 8.14 -2.39 -0.02 -0.62 16 39 H 0.07 -0.41 8.14 -2.39 -0.02 -0.43 16 40 H 0.07 -0.49 7.66 -2.39 -0.02 -0.50 16 41 H 0.16 -0.36 4.88 -2.91 -0.01 -0.37 16 Total: 0.00 -25.98 332.44 -0.73 -26.71 By element: Atomic # 1 Polarization: -25.49 SS G_CDS: -1.09 Total: -26.58 kcal Atomic # 6 Polarization: 3.40 SS G_CDS: 6.41 Total: 9.81 kcal Atomic # 7 Polarization: -2.92 SS G_CDS: -6.19 Total: -9.11 kcal Atomic # 8 Polarization: 0.71 SS G_CDS: -1.90 Total: -1.20 kcal Atomic # 14 Polarization: -1.68 SS G_CDS: 2.05 Total: 0.37 kcal Total: -25.98 -0.73 -26.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16607478_13915762.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.146 kcal (2) G-P(sol) polarization free energy of solvation -25.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds