Wall clock time and date at job start Mon Mar 8 2021 08:31:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33324 * 125.95181 * 2 1 4 4 C 1.50693 * 122.71329 * 359.97438 * 3 2 1 5 5 O 1.42901 * 109.47108 * 30.00239 * 4 3 2 6 6 Si 1.86302 * 109.47329 * 149.99769 * 4 3 2 7 7 H 1.48498 * 109.46840 * 59.99926 * 6 4 3 8 8 H 1.48495 * 109.47566 * 180.02562 * 6 4 3 9 9 H 1.48504 * 109.47252 * 300.00718 * 6 4 3 10 10 N 1.32126 * 114.57310 * 179.75506 * 3 2 1 11 11 C 1.29685 * 116.87067 * 0.47068 * 10 3 2 12 12 N 1.38610 * 124.95048 * 179.81300 * 11 10 3 13 13 C 1.45956 * 110.99642 * 55.77228 * 12 11 10 14 14 C 1.47423 * 116.41716 * 133.89603 * 13 12 11 15 15 C 1.56305 * 109.04685 * 64.55800 * 14 13 12 16 16 Si 1.84350 * 108.43859 * 295.46951 * 15 14 13 17 17 C 1.88239 * 111.07098 * 318.90749 * 16 15 14 18 18 C 1.56279 * 99.05110 * 221.78728 * 17 16 15 19 19 C 1.53734 * 109.69830 * 39.69711 * 18 17 16 20 20 C 1.55575 * 111.36907 * 311.87593 * 19 18 17 21 21 C 1.86535 * 113.02932 * 83.14805 * 16 15 14 22 22 C 1.47191 * 111.00308 * 297.76264 * 12 11 10 23 23 S 1.70963 * 110.09776 * 359.55128 * 11 10 3 24 24 H 1.08991 * 109.47358 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.46759 * 300.02396 * 1 2 3 26 26 H 1.09000 * 109.46928 * 60.02214 * 1 2 3 27 27 H 1.08991 * 109.47588 * 270.00058 * 4 3 2 28 28 H 0.96705 * 114.00394 * 59.99333 * 5 4 3 29 29 H 1.09002 * 108.06033 * 12.15740 * 13 12 11 30 30 H 1.09005 * 108.05579 * 255.63151 * 13 12 11 31 31 H 1.09007 * 109.53628 * 184.42356 * 14 13 12 32 32 H 1.08989 * 109.54591 * 304.59772 * 14 13 12 33 33 H 1.09004 * 109.64856 * 55.16045 * 15 14 13 34 34 H 1.09001 * 109.63987 * 175.57922 * 15 14 13 35 35 H 1.09005 * 111.48129 * 339.24531 * 17 16 15 36 36 H 1.08998 * 111.48261 * 104.33018 * 17 16 15 37 37 H 1.09000 * 109.43631 * 279.62414 * 18 17 16 38 38 H 1.09004 * 109.39368 * 159.74577 * 18 17 16 39 39 H 1.09002 * 109.10989 * 191.36912 * 19 18 17 40 40 H 1.09005 * 109.01871 * 72.32316 * 19 18 17 41 41 H 1.08988 * 111.11485 * 270.21016 * 20 19 18 42 42 H 1.08998 * 111.15716 * 146.07368 * 20 19 18 43 43 H 1.08999 * 109.69822 * 79.26360 * 21 16 15 44 44 H 1.08997 * 109.69565 * 199.85158 * 21 16 15 45 45 H 1.08990 * 110.23420 * 112.05884 * 22 12 11 46 46 H 1.09009 * 110.23663 * 350.05360 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2898 1.0793 0.0000 4 6 1.7415 2.4829 -0.0006 5 8 0.4812 2.5023 0.6727 6 14 2.9321 3.6151 0.8779 7 1 4.2419 3.5949 0.1783 8 1 2.3916 4.9982 0.8779 9 1 3.1118 3.1543 2.2781 10 7 3.5851 0.8186 0.0051 11 6 3.9315 -0.4311 0.0000 12 7 5.2384 -0.8928 0.0003 13 6 5.9847 -0.3496 1.1310 14 6 6.8018 -1.3071 1.8983 15 6 7.9351 -1.8637 0.9769 16 14 7.1560 -2.8232 -0.3908 17 6 5.7236 -3.8662 0.2447 18 6 5.9994 -5.1781 -0.5585 19 6 7.5122 -5.4476 -0.6071 20 6 8.3022 -4.1722 -1.0191 21 6 6.5856 -1.7476 -1.8040 22 6 5.9514 -0.4594 -1.2122 23 16 2.5412 -1.4261 0.0000 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5142 0.8898 26 1 -0.3633 0.5135 -0.8902 27 1 1.6097 2.8211 -1.0283 28 1 0.5230 2.2126 1.5944 29 1 5.2727 0.1116 1.8155 30 1 6.6443 0.4329 0.7558 31 1 7.2449 -0.8021 2.7568 32 1 6.1738 -2.1285 2.2427 33 1 8.5102 -1.0357 0.5624 34 1 8.5923 -2.5126 1.5558 35 1 5.7974 -4.0332 1.3193 36 1 4.7618 -3.4289 -0.0234 37 1 5.6176 -5.0690 -1.5736 38 1 5.4976 -6.0136 -0.0703 39 1 7.7106 -6.2392 -1.3296 40 1 7.8470 -5.7720 0.3782 41 1 8.4194 -4.1155 -2.1012 42 1 9.2697 -4.1301 -0.5189 43 1 7.4370 -1.4830 -2.4312 44 1 5.8442 -2.2830 -2.3971 45 1 6.7290 0.2599 -0.9554 46 1 5.2520 -0.0220 -1.9248 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_16607482_15704122.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:31:49 Heat of formation + Delta-G solvation = -17.276787 kcal Electronic energy + Delta-G solvation = -24850.068564 eV Core-core repulsion = 21603.791142 eV Total energy + Delta-G solvation = -3246.277422 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 326.135 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.61697 -39.62422 -37.50047 -36.08566 -34.42249 -33.09265 -31.15522 -29.61529 -29.19933 -26.97800 -25.72819 -24.97872 -24.52087 -22.85041 -22.11778 -20.89231 -19.94709 -19.36534 -18.13210 -17.46712 -17.05429 -16.40301 -15.94423 -15.76685 -15.61287 -15.39796 -15.10277 -14.98728 -14.74279 -14.45608 -14.31319 -14.02601 -13.92530 -13.76520 -13.53393 -13.16545 -12.82524 -12.77041 -12.53672 -12.44844 -12.33034 -12.14674 -12.06092 -12.01525 -11.86859 -11.77679 -11.49352 -11.27822 -10.91794 -10.59648 -10.52206 -10.31364 -10.16138 -10.13892 -9.84909 -9.53847 -0.37377 0.16987 0.72786 1.14110 1.55012 1.64180 1.68782 1.86458 1.95608 1.99151 2.08768 2.65257 2.77435 3.16665 3.37286 3.72999 3.94694 4.08803 4.13990 4.17481 4.22050 4.25418 4.28198 4.45014 4.50029 4.51673 4.57768 4.59230 4.67629 4.73682 4.77050 4.78982 4.80544 4.86583 4.90164 5.03489 5.15212 5.16709 5.18223 5.23057 5.27131 5.33867 5.37358 5.44420 5.59320 5.61146 5.70860 5.86770 6.32921 6.63292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.205 4.205 3 C 0.024 3.976 4 C -0.044 4.044 5 O -0.534 6.534 6 Si 0.976 3.024 7 H -0.246 1.246 8 H -0.259 1.259 9 H -0.259 1.259 10 N -0.493 5.493 11 C 0.203 3.797 12 N -0.441 5.441 13 C 0.040 3.960 14 C -0.103 4.103 15 C -0.411 4.411 16 Si 1.022 2.978 17 C -0.390 4.390 18 C -0.123 4.123 19 C -0.116 4.116 20 C -0.419 4.419 21 C -0.403 4.403 22 C 0.059 3.941 23 S 0.187 5.813 24 H 0.063 0.937 25 H 0.088 0.912 26 H 0.082 0.918 27 H 0.124 0.876 28 H 0.376 0.624 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.059 0.941 38 H 0.061 0.939 39 H 0.058 0.942 40 H 0.059 0.941 41 H 0.073 0.927 42 H 0.074 0.926 43 H 0.078 0.922 44 H 0.079 0.921 45 H 0.077 0.923 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.200 -0.516 0.717 0.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.327 4.327 3 C -0.108 4.108 4 C -0.157 4.157 5 O -0.338 6.338 6 Si 0.798 3.202 7 H -0.169 1.169 8 H -0.183 1.183 9 H -0.183 1.183 10 N -0.213 5.213 11 C -0.164 4.164 12 N -0.164 5.164 13 C -0.088 4.088 14 C -0.141 4.141 15 C -0.498 4.498 16 Si 1.213 2.787 17 C -0.476 4.476 18 C -0.161 4.161 19 C -0.153 4.153 20 C -0.503 4.503 21 C -0.489 4.489 22 C -0.069 4.069 23 S 0.443 5.557 24 H 0.082 0.918 25 H 0.106 0.894 26 H 0.101 0.899 27 H 0.142 0.858 28 H 0.224 0.776 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.090 0.910 36 H 0.098 0.902 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.097 0.903 44 H 0.098 0.902 45 H 0.095 0.905 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.430 -0.957 0.594 1.205 hybrid contribution -0.241 0.861 0.086 0.898 sum 0.189 -0.096 0.680 0.712 Atomic orbital electron populations 1.20306 0.85922 1.02272 1.04328 1.25784 1.02188 0.94411 1.10293 1.20305 0.87479 0.97672 1.05387 1.24458 0.92538 0.95047 1.03706 1.86543 1.28852 1.89568 1.28861 0.85226 0.78129 0.77310 0.79564 1.16871 1.18332 1.18301 1.66650 1.17691 1.19471 1.17472 1.24530 0.97473 0.89838 1.04602 1.60787 0.96924 1.53086 1.05647 1.21355 0.97295 0.97282 0.92882 1.20765 0.96261 0.99441 0.97635 1.26517 1.03379 1.08350 1.11524 0.79274 0.66833 0.66128 0.66489 1.26731 1.12881 1.05250 1.02786 1.22027 0.95540 0.98329 1.00158 1.21785 0.94488 0.97789 1.01256 1.26680 1.07229 1.11318 1.05121 1.26755 1.04587 1.04815 1.12741 1.22921 0.97056 0.96840 0.90075 1.84106 0.95881 1.09005 1.66682 0.91850 0.89397 0.89898 0.85850 0.77626 0.91700 0.91606 0.90582 0.90685 0.90822 0.90322 0.90972 0.90186 0.92183 0.92057 0.92345 0.92245 0.90831 0.90726 0.90345 0.90214 0.90454 0.91037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 0.09 8.91 36.01 0.32 0.41 16 2 C -0.21 -0.11 6.50 -36.02 -0.23 -0.34 16 3 C 0.02 0.03 5.92 -84.19 -0.50 -0.47 16 4 C -0.04 0.00 2.94 36.00 0.11 0.10 16 5 O -0.53 0.37 10.17 -35.23 -0.36 0.01 16 6 Si 0.98 0.88 27.36 -169.99 -4.65 -3.77 16 7 H -0.25 -0.61 7.11 56.52 0.40 -0.21 16 8 H -0.26 -0.43 7.11 56.52 0.40 -0.03 16 9 H -0.26 -0.45 7.11 56.52 0.40 -0.05 16 10 N -0.49 -1.16 8.59 -11.37 -0.10 -1.26 16 11 C 0.20 0.30 5.35 -87.68 -0.47 -0.17 16 12 N -0.44 -0.10 2.36 -177.68 -0.42 -0.52 16 13 C 0.04 -0.01 4.65 -7.02 -0.03 -0.04 16 14 C -0.10 0.11 5.73 -27.64 -0.16 -0.05 16 15 C -0.41 0.56 4.87 38.93 0.19 0.75 16 16 Si 1.02 -1.39 9.04 -169.99 -1.54 -2.93 16 17 C -0.39 0.05 5.43 38.92 0.21 0.26 16 18 C -0.12 -0.04 5.97 -24.59 -0.15 -0.19 16 19 C -0.12 -0.05 6.09 -24.98 -0.15 -0.20 16 20 C -0.42 0.09 5.84 38.53 0.23 0.32 16 21 C -0.40 0.37 5.26 38.38 0.20 0.57 16 22 C 0.06 0.00 5.71 -2.44 -0.01 -0.02 16 23 S 0.19 0.09 23.17 -107.50 -2.49 -2.40 16 24 H 0.06 -0.12 8.14 -51.93 -0.42 -0.54 16 25 H 0.09 -0.20 6.39 -51.93 -0.33 -0.53 16 26 H 0.08 -0.08 8.14 -51.93 -0.42 -0.50 16 27 H 0.12 -0.07 7.96 -51.93 -0.41 -0.49 16 28 H 0.38 -1.31 8.13 45.56 0.37 -0.94 16 29 H 0.06 0.05 7.36 -51.93 -0.38 -0.33 16 30 H 0.07 -0.03 6.44 -51.93 -0.33 -0.36 16 31 H 0.08 -0.11 8.14 -51.93 -0.42 -0.54 16 32 H 0.07 -0.07 6.81 -51.93 -0.35 -0.43 16 33 H 0.07 -0.12 7.94 -51.93 -0.41 -0.53 16 34 H 0.08 -0.11 7.96 -51.93 -0.41 -0.53 16 35 H 0.07 0.00 7.33 -51.93 -0.38 -0.39 16 36 H 0.08 0.03 7.52 -51.93 -0.39 -0.37 16 37 H 0.06 0.01 8.14 -51.93 -0.42 -0.41 16 38 H 0.06 0.03 8.14 -51.93 -0.42 -0.39 16 39 H 0.06 0.04 8.14 -51.93 -0.42 -0.39 16 40 H 0.06 0.02 8.14 -51.93 -0.42 -0.40 16 41 H 0.07 -0.01 8.03 -51.94 -0.42 -0.43 16 42 H 0.07 -0.03 8.03 -51.93 -0.42 -0.44 16 43 H 0.08 -0.13 7.97 -51.93 -0.41 -0.54 16 44 H 0.08 -0.04 7.97 -51.93 -0.41 -0.45 16 45 H 0.08 -0.06 6.54 -51.93 -0.34 -0.40 16 46 H 0.07 0.07 7.61 -51.92 -0.39 -0.32 16 LS Contribution 358.19 15.07 5.40 5.40 Total: 0.00 -3.67 358.19 -11.80 -15.47 By element: Atomic # 1 Polarization: -3.75 SS G_CDS: -7.19 Total: -10.94 kcal Atomic # 6 Polarization: 1.39 SS G_CDS: -0.45 Total: 0.94 kcal Atomic # 7 Polarization: -1.26 SS G_CDS: -0.52 Total: -1.78 kcal Atomic # 8 Polarization: 0.37 SS G_CDS: -0.36 Total: 0.01 kcal Atomic # 14 Polarization: -0.51 SS G_CDS: -6.19 Total: -6.70 kcal Atomic # 16 Polarization: 0.09 SS G_CDS: -2.49 Total: -2.40 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -3.67 -11.80 -15.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16607482_15704122.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.809 kcal (2) G-P(sol) polarization free energy of solvation -3.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds