Wall clock time and date at job start Mon Mar 8 2021 08:31:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33324 * 125.95181 * 2 1 4 4 C 1.50693 * 122.71329 * 359.97438 * 3 2 1 5 5 O 1.42901 * 109.47108 * 30.00239 * 4 3 2 6 6 Si 1.86302 * 109.47329 * 149.99769 * 4 3 2 7 7 H 1.48498 * 109.46840 * 59.99926 * 6 4 3 8 8 H 1.48495 * 109.47566 * 180.02562 * 6 4 3 9 9 H 1.48504 * 109.47252 * 300.00718 * 6 4 3 10 10 N 1.32126 * 114.57310 * 179.75506 * 3 2 1 11 11 C 1.29685 * 116.87067 * 0.47068 * 10 3 2 12 12 N 1.38610 * 124.95048 * 179.81300 * 11 10 3 13 13 C 1.45956 * 110.99642 * 55.77228 * 12 11 10 14 14 C 1.47423 * 116.41716 * 133.89603 * 13 12 11 15 15 C 1.56305 * 109.04685 * 64.55800 * 14 13 12 16 16 Si 1.84350 * 108.43859 * 295.46951 * 15 14 13 17 17 C 1.88239 * 111.07098 * 318.90749 * 16 15 14 18 18 C 1.56279 * 99.05110 * 221.78728 * 17 16 15 19 19 C 1.53734 * 109.69830 * 39.69711 * 18 17 16 20 20 C 1.55575 * 111.36907 * 311.87593 * 19 18 17 21 21 C 1.86535 * 113.02932 * 83.14805 * 16 15 14 22 22 C 1.47191 * 111.00308 * 297.76264 * 12 11 10 23 23 S 1.70963 * 110.09776 * 359.55128 * 11 10 3 24 24 H 1.08991 * 109.47358 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.46759 * 300.02396 * 1 2 3 26 26 H 1.09000 * 109.46928 * 60.02214 * 1 2 3 27 27 H 1.08991 * 109.47588 * 270.00058 * 4 3 2 28 28 H 0.96705 * 114.00394 * 59.99333 * 5 4 3 29 29 H 1.09002 * 108.06033 * 12.15740 * 13 12 11 30 30 H 1.09005 * 108.05579 * 255.63151 * 13 12 11 31 31 H 1.09007 * 109.53628 * 184.42356 * 14 13 12 32 32 H 1.08989 * 109.54591 * 304.59772 * 14 13 12 33 33 H 1.09004 * 109.64856 * 55.16045 * 15 14 13 34 34 H 1.09001 * 109.63987 * 175.57922 * 15 14 13 35 35 H 1.09005 * 111.48129 * 339.24531 * 17 16 15 36 36 H 1.08998 * 111.48261 * 104.33018 * 17 16 15 37 37 H 1.09000 * 109.43631 * 279.62414 * 18 17 16 38 38 H 1.09004 * 109.39368 * 159.74577 * 18 17 16 39 39 H 1.09002 * 109.10989 * 191.36912 * 19 18 17 40 40 H 1.09005 * 109.01871 * 72.32316 * 19 18 17 41 41 H 1.08988 * 111.11485 * 270.21016 * 20 19 18 42 42 H 1.08998 * 111.15716 * 146.07368 * 20 19 18 43 43 H 1.08999 * 109.69822 * 79.26360 * 21 16 15 44 44 H 1.08997 * 109.69565 * 199.85158 * 21 16 15 45 45 H 1.08990 * 110.23420 * 112.05884 * 22 12 11 46 46 H 1.09009 * 110.23663 * 350.05360 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2898 1.0793 0.0000 4 6 1.7415 2.4829 -0.0006 5 8 0.4812 2.5023 0.6727 6 14 2.9321 3.6151 0.8779 7 1 4.2419 3.5949 0.1783 8 1 2.3916 4.9982 0.8779 9 1 3.1118 3.1543 2.2781 10 7 3.5851 0.8186 0.0051 11 6 3.9315 -0.4311 0.0000 12 7 5.2384 -0.8928 0.0003 13 6 5.9847 -0.3496 1.1310 14 6 6.8018 -1.3071 1.8983 15 6 7.9351 -1.8637 0.9769 16 14 7.1560 -2.8232 -0.3908 17 6 5.7236 -3.8662 0.2447 18 6 5.9994 -5.1781 -0.5585 19 6 7.5122 -5.4476 -0.6071 20 6 8.3022 -4.1722 -1.0191 21 6 6.5856 -1.7476 -1.8040 22 6 5.9514 -0.4594 -1.2122 23 16 2.5412 -1.4261 0.0000 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5142 0.8898 26 1 -0.3633 0.5135 -0.8902 27 1 1.6097 2.8211 -1.0283 28 1 0.5230 2.2126 1.5944 29 1 5.2727 0.1116 1.8155 30 1 6.6443 0.4329 0.7558 31 1 7.2449 -0.8021 2.7568 32 1 6.1738 -2.1285 2.2427 33 1 8.5102 -1.0357 0.5624 34 1 8.5923 -2.5126 1.5558 35 1 5.7974 -4.0332 1.3193 36 1 4.7618 -3.4289 -0.0234 37 1 5.6176 -5.0690 -1.5736 38 1 5.4976 -6.0136 -0.0703 39 1 7.7106 -6.2392 -1.3296 40 1 7.8470 -5.7720 0.3782 41 1 8.4194 -4.1155 -2.1012 42 1 9.2697 -4.1301 -0.5189 43 1 7.4370 -1.4830 -2.4312 44 1 5.8442 -2.2830 -2.3971 45 1 6.7290 0.2599 -0.9554 46 1 5.2520 -0.0220 -1.9248 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_16607482_15704122.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:31:48 Heat of formation + Delta-G solvation = -6.495358 kcal Electronic energy + Delta-G solvation = -24849.601046 eV Core-core repulsion = 21603.791142 eV Total energy + Delta-G solvation = -3245.809904 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 326.135 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.64917 -39.61484 -37.47261 -36.09419 -34.36590 -33.06428 -31.11692 -29.60231 -29.18857 -26.93440 -25.71046 -24.96585 -24.52331 -22.82060 -22.08832 -20.90148 -19.95221 -19.39933 -18.13024 -17.47061 -17.05082 -16.38983 -16.01128 -15.77940 -15.60706 -15.35750 -15.06903 -14.97172 -14.79464 -14.42929 -14.28069 -13.99232 -13.87860 -13.69254 -13.48153 -13.11989 -12.79552 -12.75203 -12.51892 -12.40587 -12.37331 -12.26714 -12.07557 -12.01998 -11.88826 -11.77938 -11.46162 -11.29578 -10.96572 -10.58456 -10.47479 -10.30546 -10.17669 -10.10736 -9.84768 -9.56515 -0.41543 0.14473 0.68597 1.08587 1.42876 1.54679 1.59895 1.91862 1.98349 2.03351 2.09466 2.65779 2.82375 3.16701 3.45273 3.74419 3.98377 4.11240 4.17898 4.20370 4.21119 4.25593 4.33616 4.46343 4.49859 4.58036 4.61509 4.64141 4.74141 4.76915 4.79084 4.80715 4.82623 4.94682 4.96243 5.11764 5.16383 5.19872 5.25273 5.27255 5.29688 5.40812 5.42664 5.46693 5.60588 5.63016 5.72189 5.83748 6.43393 6.66498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.203 4.203 3 C 0.009 3.991 4 C -0.033 4.033 5 O -0.536 6.536 6 Si 1.003 2.997 7 H -0.271 1.271 8 H -0.269 1.269 9 H -0.272 1.272 10 N -0.512 5.512 11 C 0.192 3.808 12 N -0.438 5.438 13 C 0.041 3.959 14 C -0.103 4.103 15 C -0.413 4.413 16 Si 1.066 2.934 17 C -0.401 4.401 18 C -0.126 4.126 19 C -0.120 4.120 20 C -0.429 4.429 21 C -0.407 4.407 22 C 0.057 3.943 23 S 0.195 5.805 24 H 0.070 0.930 25 H 0.100 0.900 26 H 0.082 0.918 27 H 0.131 0.869 28 H 0.389 0.611 29 H 0.052 0.948 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.059 0.941 38 H 0.056 0.944 39 H 0.053 0.947 40 H 0.059 0.941 41 H 0.072 0.928 42 H 0.077 0.923 43 H 0.088 0.912 44 H 0.074 0.926 45 H 0.085 0.915 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.358 -0.563 0.844 1.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.325 4.325 3 C -0.123 4.123 4 C -0.147 4.147 5 O -0.342 6.342 6 Si 0.829 3.171 7 H -0.195 1.195 8 H -0.194 1.194 9 H -0.196 1.196 10 N -0.232 5.232 11 C -0.175 4.175 12 N -0.162 5.162 13 C -0.087 4.087 14 C -0.141 4.141 15 C -0.500 4.500 16 Si 1.253 2.747 17 C -0.486 4.486 18 C -0.163 4.163 19 C -0.158 4.158 20 C -0.512 4.512 21 C -0.492 4.492 22 C -0.071 4.071 23 S 0.451 5.549 24 H 0.089 0.911 25 H 0.118 0.882 26 H 0.100 0.900 27 H 0.148 0.852 28 H 0.238 0.762 29 H 0.071 0.929 30 H 0.086 0.914 31 H 0.100 0.900 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.102 0.898 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.078 0.922 41 H 0.091 0.909 42 H 0.096 0.904 43 H 0.106 0.894 44 H 0.093 0.907 45 H 0.103 0.897 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.261 -1.015 0.729 1.277 hybrid contribution -0.202 0.858 0.059 0.884 sum 0.059 -0.157 0.788 0.806 Atomic orbital electron populations 1.20386 0.84606 1.02968 1.04818 1.26034 1.03030 0.94072 1.09367 1.20499 0.87370 0.98399 1.06060 1.24294 0.92388 0.94067 1.03939 1.86520 1.28200 1.89580 1.29937 0.84839 0.76984 0.76836 0.78470 1.19550 1.19354 1.19642 1.66652 1.18419 1.20073 1.18064 1.24720 0.98124 0.89920 1.04759 1.60869 0.96634 1.52899 1.05830 1.21381 0.97059 0.97631 0.92631 1.20768 0.96255 0.99261 0.97771 1.26533 1.03379 1.08660 1.11422 0.78641 0.65300 0.64961 0.65750 1.26863 1.13485 1.05485 1.02746 1.22049 0.95538 0.98509 1.00226 1.21827 0.94621 0.98119 1.01213 1.26810 1.07651 1.11539 1.05244 1.26824 1.04735 1.04479 1.13175 1.22952 0.96929 0.97388 0.89783 1.84037 0.95529 1.08927 1.66417 0.91081 0.88198 0.89957 0.85167 0.76186 0.92889 0.91379 0.89964 0.90744 0.90152 0.89834 0.91042 0.90674 0.92192 0.92484 0.92791 0.92182 0.90867 0.90402 0.89380 0.90691 0.89729 0.92341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 0.23 8.91 71.24 0.63 0.86 16 2 C -0.20 -0.19 6.50 24.58 0.16 -0.03 16 3 C 0.01 0.03 5.92 41.40 0.25 0.27 16 4 C -0.03 -0.01 2.94 71.23 0.21 0.20 16 5 O -0.54 1.11 10.17 -148.98 -1.52 -0.40 16 6 Si 1.00 2.63 27.36 68.60 1.88 4.50 16 7 H -0.27 -1.80 7.11 99.48 0.71 -1.09 16 8 H -0.27 -1.06 7.11 99.48 0.71 -0.35 16 9 H -0.27 -1.20 7.11 99.48 0.71 -0.49 16 10 N -0.51 -2.80 8.59 -189.87 -1.63 -4.43 16 11 C 0.19 0.69 5.35 179.32 0.96 1.65 16 12 N -0.44 -0.43 2.36 -716.05 -1.69 -2.12 16 13 C 0.04 0.00 4.65 84.74 0.39 0.40 16 14 C -0.10 0.23 5.73 30.00 0.17 0.41 16 15 C -0.41 1.42 4.87 73.13 0.36 1.77 16 16 Si 1.07 -3.09 9.04 68.60 0.62 -2.47 16 17 C -0.40 -0.03 5.43 73.12 0.40 0.37 16 18 C -0.13 -0.15 5.97 31.98 0.19 0.04 16 19 C -0.12 -0.14 6.09 31.73 0.19 0.05 16 20 C -0.43 0.26 5.84 72.87 0.43 0.69 16 21 C -0.41 0.75 5.26 72.78 0.38 1.13 16 22 C 0.06 0.02 5.71 87.04 0.50 0.51 16 23 S 0.20 0.26 23.17 -56.49 -1.31 -1.05 16 24 H 0.07 -0.33 8.14 -2.39 -0.02 -0.35 16 25 H 0.10 -0.57 6.39 -2.39 -0.02 -0.58 16 26 H 0.08 -0.22 8.14 -2.39 -0.02 -0.24 16 27 H 0.13 -0.17 7.96 -2.39 -0.02 -0.19 16 28 H 0.39 -3.01 8.13 -74.05 -0.60 -3.62 16 29 H 0.05 0.14 7.36 -2.39 -0.02 0.12 16 30 H 0.07 -0.04 6.44 -2.38 -0.02 -0.05 16 31 H 0.08 -0.28 8.14 -2.38 -0.02 -0.30 16 32 H 0.07 -0.15 6.81 -2.39 -0.02 -0.17 16 33 H 0.08 -0.35 7.94 -2.39 -0.02 -0.37 16 34 H 0.08 -0.33 7.96 -2.39 -0.02 -0.35 16 35 H 0.07 0.01 7.33 -2.38 -0.02 -0.01 16 36 H 0.07 0.09 7.52 -2.39 -0.02 0.07 16 37 H 0.06 0.06 8.14 -2.39 -0.02 0.04 16 38 H 0.06 0.10 8.14 -2.38 -0.02 0.08 16 39 H 0.05 0.10 8.14 -2.39 -0.02 0.08 16 40 H 0.06 0.05 8.14 -2.38 -0.02 0.03 16 41 H 0.07 -0.04 8.03 -2.39 -0.02 -0.06 16 42 H 0.08 -0.09 8.03 -2.39 -0.02 -0.11 16 43 H 0.09 -0.33 7.97 -2.39 -0.02 -0.35 16 44 H 0.07 -0.05 7.97 -2.39 -0.02 -0.07 16 45 H 0.08 -0.12 6.54 -2.39 -0.02 -0.14 16 46 H 0.06 0.18 7.61 -2.38 -0.02 0.16 16 Total: 0.00 -8.64 358.19 2.69 -5.95 By element: Atomic # 1 Polarization: -9.43 SS G_CDS: 1.12 Total: -8.31 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: 5.22 Total: 8.33 kcal Atomic # 7 Polarization: -3.23 SS G_CDS: -3.32 Total: -6.55 kcal Atomic # 8 Polarization: 1.11 SS G_CDS: -1.52 Total: -0.40 kcal Atomic # 14 Polarization: -0.46 SS G_CDS: 2.50 Total: 2.04 kcal Atomic # 16 Polarization: 0.26 SS G_CDS: -1.31 Total: -1.05 kcal Total: -8.64 2.69 -5.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16607482_15704122.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.547 kcal (2) G-P(sol) polarization free energy of solvation -8.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -5.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds