Wall clock time and date at job start Mon Mar 8 2021 08:38:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86293 * 1 3 3 C 1.86298 * 109.99719 * 2 1 4 4 C 1.87462 * 110.01736 * 238.54838 * 2 1 3 5 5 C 1.53642 * 107.32345 * 287.41595 * 4 2 1 6 6 C 1.52503 * 110.12700 * 299.65810 * 5 4 2 7 7 N 1.46344 * 111.68915 * 71.26569 * 6 5 4 8 8 N 1.40101 * 120.53296 * 109.12773 * 7 6 5 9 9 C 1.30394 * 119.99485 * 63.89812 * 8 7 6 10 10 N 1.38132 * 127.62002 * 186.05684 * 9 8 7 11 11 C 1.36752 * 116.23392 * 179.85413 * 10 9 8 12 12 C 1.32048 * 118.34727 * 0.47595 * 11 10 9 13 13 C 1.50700 * 126.97437 * 179.71560 * 12 11 10 14 14 O 1.42897 * 109.47205 * 120.01452 * 13 12 11 15 15 Si 1.86306 * 109.46987 * 240.01390 * 13 12 11 16 16 H 1.48496 * 109.46931 * 59.99900 * 15 13 12 17 17 H 1.48496 * 109.46963 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47109 * 299.99967 * 15 13 12 19 19 S 1.77251 * 106.05631 * 359.74499 * 12 11 10 20 20 C 1.47786 * 118.93510 * 289.10815 * 7 6 5 21 21 H 1.09002 * 109.47511 * 298.66074 * 1 2 3 22 22 H 1.09001 * 109.47333 * 178.65848 * 1 2 3 23 23 H 1.08997 * 109.47137 * 58.66431 * 1 2 3 24 24 H 1.08994 * 109.47656 * 59.99424 * 3 2 1 25 25 H 1.08997 * 109.47543 * 180.02562 * 3 2 1 26 26 H 1.09006 * 109.46664 * 299.99489 * 3 2 1 27 27 H 1.09003 * 109.88499 * 46.87170 * 4 2 1 28 28 H 1.08995 * 109.88468 * 167.96082 * 4 2 1 29 29 H 1.09001 * 109.35999 * 179.45683 * 5 4 2 30 30 H 1.09003 * 109.36576 * 59.86078 * 5 4 2 31 31 H 1.09000 * 109.03622 * 310.69995 * 6 5 4 32 32 H 1.08995 * 108.98079 * 191.79715 * 6 5 4 33 33 H 0.96994 * 121.88478 * 0.02562 * 10 9 8 34 34 H 1.08004 * 120.82812 * 180.19967 * 11 10 9 35 35 H 1.08993 * 109.46897 * 0.02562 * 13 12 11 36 36 H 0.96707 * 114.00034 * 59.99904 * 14 13 12 37 37 H 1.09001 * 110.08635 * 295.54206 * 20 7 6 38 38 H 1.09006 * 110.17432 * 173.98310 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8629 0.0000 0.0000 3 6 2.5000 1.7507 0.0000 4 6 2.5046 -0.9190 -1.5026 5 6 2.2487 -2.4156 -1.2673 6 6 2.9860 -2.8838 -0.0171 7 7 2.3717 -2.3571 1.2022 8 7 1.6687 -3.2047 2.0684 9 6 2.2923 -4.1706 2.6837 10 7 1.7419 -5.1609 3.4738 11 6 2.6179 -6.0656 4.0070 12 6 3.9037 -5.9247 3.7415 13 6 5.0308 -6.7987 4.2281 14 8 5.7090 -7.3694 3.1073 15 14 6.2274 -5.7732 5.2217 16 1 5.5226 -5.1801 6.3865 17 1 7.3377 -6.6346 5.7017 18 1 6.7754 -4.6876 4.3695 19 16 4.0353 -4.4984 2.6974 20 6 2.5050 -0.9169 1.5054 21 1 -0.3634 0.4929 0.9017 22 1 -0.3634 -1.0274 -0.0241 23 1 -0.3633 0.5344 -0.8777 24 1 2.1414 2.2679 0.8898 25 1 3.5899 1.7407 -0.0005 26 1 2.1414 2.2677 -0.8901 27 1 1.9731 -0.5878 -2.3947 28 1 3.5734 -0.7394 -1.6186 29 1 2.6020 -2.9824 -2.1287 30 1 1.1793 -2.5839 -1.1404 31 1 4.0213 -2.5467 -0.0678 32 1 2.9684 -3.9731 0.0178 33 1 0.7875 -5.2133 3.6390 34 1 2.2674 -6.8725 4.6334 35 1 4.6286 -7.5956 4.8534 36 1 6.0933 -6.7167 2.5059 37 1 3.5516 -0.6660 1.6781 38 1 1.9096 -0.6605 2.3818 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_16607524_15704118.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:38:30 Heat of formation + Delta-G solvation = 6.494084 kcal Electronic energy + Delta-G solvation = -18845.335855 eV Core-core repulsion = 15973.964683 eV Total energy + Delta-G solvation = -2871.371172 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 287.099 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.34260 -38.40236 -37.77941 -34.84001 -32.65843 -30.98160 -29.36546 -28.38527 -27.63035 -26.58077 -25.51045 -23.64356 -21.92305 -21.06790 -19.13978 -18.09513 -17.77009 -17.28304 -16.54619 -16.15126 -15.68624 -15.57236 -15.34388 -14.69244 -14.62218 -14.40115 -14.17476 -13.95609 -13.81445 -13.49289 -13.23365 -13.18411 -13.08957 -12.94045 -12.43486 -12.30392 -12.16134 -12.07597 -11.90245 -11.62573 -11.44737 -10.83383 -10.80091 -10.60632 -10.29529 -10.24513 -8.67804 -7.96069 0.11391 0.42408 0.91812 1.09657 1.22251 1.28033 1.44980 1.57009 1.77158 1.90141 1.93659 1.98376 2.62436 2.67067 3.39674 3.66673 4.04446 4.14663 4.19647 4.29929 4.44605 4.57319 4.60016 4.73577 4.75069 4.77191 4.80956 4.85983 4.88032 4.97652 5.05663 5.13156 5.29861 5.44544 5.50478 5.56071 5.65702 6.07744 6.39030 6.42651 7.49751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.440 4.440 2 Si 1.001 2.999 3 C -0.449 4.449 4 C -0.402 4.402 5 C -0.123 4.123 6 C 0.130 3.870 7 N -0.537 5.537 8 N -0.275 5.275 9 C 0.323 3.677 10 N -0.629 5.629 11 C 0.112 3.888 12 C -0.259 4.259 13 C -0.021 4.021 14 O -0.535 6.535 15 Si 0.935 3.065 16 H -0.247 1.247 17 H -0.244 1.244 18 H -0.244 1.244 19 S -0.032 6.032 20 C -0.129 4.129 21 H 0.066 0.934 22 H 0.072 0.928 23 H 0.065 0.935 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.058 0.942 32 H 0.067 0.933 33 H 0.424 0.576 34 H 0.181 0.819 35 H 0.126 0.874 36 H 0.376 0.624 37 H 0.051 0.949 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.061 -0.452 1.053 1.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.548 4.548 2 Si 1.196 2.804 3 C -0.557 4.557 4 C -0.489 4.489 5 C -0.162 4.162 6 C 0.004 3.996 7 N -0.360 5.360 8 N -0.097 5.097 9 C -0.062 4.062 10 N -0.255 5.255 11 C -0.019 4.019 12 C -0.382 4.382 13 C -0.134 4.134 14 O -0.340 6.340 15 Si 0.755 3.245 16 H -0.170 1.170 17 H -0.167 1.167 18 H -0.167 1.167 19 S 0.204 5.796 20 C -0.300 4.300 21 H 0.085 0.915 22 H 0.091 0.909 23 H 0.085 0.915 24 H 0.088 0.912 25 H 0.088 0.912 26 H 0.089 0.911 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.263 0.737 34 H 0.198 0.802 35 H 0.143 0.857 36 H 0.224 0.776 37 H 0.070 0.930 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.583 0.582 1.105 1.378 hybrid contribution -0.980 -0.833 0.222 1.306 sum -0.397 -0.251 1.327 1.407 Atomic orbital electron populations 1.26009 1.20166 1.04616 1.03990 0.79737 0.67967 0.65621 0.67113 1.26108 1.06379 1.18703 1.04544 1.26198 1.05950 1.02619 1.14096 1.21553 1.01398 0.95999 0.97256 1.21245 0.95728 0.98588 0.84021 1.49284 1.66070 1.02698 1.17910 1.75345 1.17572 1.05368 1.11419 1.27134 0.90956 0.95164 0.92979 1.42072 1.11215 1.24774 1.47414 1.20629 0.89156 0.93894 0.98267 1.23952 0.97725 1.04524 1.11950 1.24151 0.94757 1.00501 0.93982 1.86527 1.73327 1.36509 1.37628 0.85884 0.79167 0.79089 0.80331 1.16981 1.16704 1.16668 1.85726 1.06521 1.29477 1.57826 1.26601 1.04120 0.84939 1.14308 0.91452 0.90917 0.91541 0.91163 0.91152 0.91053 0.90702 0.90675 0.91292 0.91322 0.92346 0.91450 0.73741 0.80238 0.85679 0.77626 0.93026 0.89828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.44 -0.05 8.65 101.05 0.87 0.83 16 2 Si 1.00 -1.37 11.99 -169.99 -2.04 -3.41 16 3 C -0.45 0.51 8.65 101.05 0.87 1.39 16 4 C -0.40 0.29 5.03 37.49 0.19 0.48 16 5 C -0.12 -0.04 5.68 -26.65 -0.15 -0.19 16 6 C 0.13 0.16 5.31 -4.38 -0.02 0.13 16 7 N -0.54 -1.19 3.01 -57.02 -0.17 -1.36 16 8 N -0.27 -0.92 11.39 31.09 0.35 -0.57 16 9 C 0.32 0.71 8.33 -87.57 -0.73 -0.01 16 10 N -0.63 0.31 5.66 -12.83 -0.07 0.24 16 11 C 0.11 -0.18 11.09 -17.28 -0.19 -0.37 16 12 C -0.26 0.05 4.95 -36.23 -0.18 -0.13 16 13 C -0.02 0.02 3.03 36.01 0.11 0.13 16 14 O -0.54 -0.10 12.88 -35.23 -0.45 -0.55 16 15 Si 0.94 -0.45 27.92 -169.99 -4.75 -5.19 16 16 H -0.25 -0.09 7.11 56.52 0.40 0.31 16 17 H -0.24 -0.10 7.11 56.52 0.40 0.30 16 18 H -0.24 -0.16 7.11 56.52 0.40 0.24 16 19 S -0.03 -0.05 21.29 -107.50 -2.29 -2.34 16 20 C -0.13 -0.10 5.80 60.55 0.35 0.26 16 21 H 0.07 0.01 7.96 -51.93 -0.41 -0.40 16 22 H 0.07 0.10 7.96 -51.93 -0.41 -0.32 16 23 H 0.07 -0.01 7.96 -51.93 -0.41 -0.43 16 24 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 25 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 26 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 27 H 0.07 -0.07 7.99 -51.93 -0.41 -0.48 16 28 H 0.07 -0.08 7.99 -51.93 -0.41 -0.49 16 29 H 0.07 -0.01 8.14 -51.93 -0.42 -0.43 16 30 H 0.07 0.08 7.90 -51.93 -0.41 -0.34 16 31 H 0.06 0.04 8.11 -51.93 -0.42 -0.38 16 32 H 0.07 0.13 7.58 -51.93 -0.39 -0.27 16 33 H 0.42 -1.08 8.96 -40.82 -0.37 -1.45 16 34 H 0.18 -0.93 8.06 -52.48 -0.42 -1.36 16 35 H 0.13 -0.41 7.94 -51.93 -0.41 -0.83 16 36 H 0.38 -0.76 8.70 45.56 0.40 -0.36 16 37 H 0.05 0.02 8.00 -51.93 -0.42 -0.39 16 38 H 0.08 0.10 7.99 -51.93 -0.41 -0.32 16 LS Contribution 327.10 15.07 4.93 4.93 Total: 0.00 -5.87 327.10 -8.75 -14.62 By element: Atomic # 1 Polarization: -3.49 SS G_CDS: -5.39 Total: -8.87 kcal Atomic # 6 Polarization: 1.39 SS G_CDS: 1.12 Total: 2.52 kcal Atomic # 7 Polarization: -1.80 SS G_CDS: 0.11 Total: -1.69 kcal Atomic # 8 Polarization: -0.10 SS G_CDS: -0.45 Total: -0.55 kcal Atomic # 14 Polarization: -1.82 SS G_CDS: -6.78 Total: -8.60 kcal Atomic # 16 Polarization: -0.05 SS G_CDS: -2.29 Total: -2.34 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -5.87 -8.75 -14.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16607524_15704118.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.115 kcal (2) G-P(sol) polarization free energy of solvation -5.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds