Wall clock time and date at job start Mon Mar 8 2021 08:38:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86293 * 1 3 3 C 1.86298 * 109.99719 * 2 1 4 4 C 1.87462 * 110.01736 * 238.54838 * 2 1 3 5 5 C 1.53642 * 107.32345 * 287.41595 * 4 2 1 6 6 C 1.52503 * 110.12700 * 299.65810 * 5 4 2 7 7 N 1.46344 * 111.68915 * 71.26569 * 6 5 4 8 8 N 1.40101 * 120.53296 * 109.12773 * 7 6 5 9 9 C 1.30394 * 119.99485 * 63.89812 * 8 7 6 10 10 N 1.38132 * 127.62002 * 186.05684 * 9 8 7 11 11 C 1.36752 * 116.23392 * 179.85413 * 10 9 8 12 12 C 1.32048 * 118.34727 * 0.47595 * 11 10 9 13 13 C 1.50700 * 126.97437 * 179.71560 * 12 11 10 14 14 O 1.42897 * 109.47205 * 120.01452 * 13 12 11 15 15 Si 1.86306 * 109.46987 * 240.01390 * 13 12 11 16 16 H 1.48496 * 109.46931 * 59.99900 * 15 13 12 17 17 H 1.48496 * 109.46963 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47109 * 299.99967 * 15 13 12 19 19 S 1.77251 * 106.05631 * 359.74499 * 12 11 10 20 20 C 1.47786 * 118.93510 * 289.10815 * 7 6 5 21 21 H 1.09002 * 109.47511 * 298.66074 * 1 2 3 22 22 H 1.09001 * 109.47333 * 178.65848 * 1 2 3 23 23 H 1.08997 * 109.47137 * 58.66431 * 1 2 3 24 24 H 1.08994 * 109.47656 * 59.99424 * 3 2 1 25 25 H 1.08997 * 109.47543 * 180.02562 * 3 2 1 26 26 H 1.09006 * 109.46664 * 299.99489 * 3 2 1 27 27 H 1.09003 * 109.88499 * 46.87170 * 4 2 1 28 28 H 1.08995 * 109.88468 * 167.96082 * 4 2 1 29 29 H 1.09001 * 109.35999 * 179.45683 * 5 4 2 30 30 H 1.09003 * 109.36576 * 59.86078 * 5 4 2 31 31 H 1.09000 * 109.03622 * 310.69995 * 6 5 4 32 32 H 1.08995 * 108.98079 * 191.79715 * 6 5 4 33 33 H 0.96994 * 121.88478 * 0.02562 * 10 9 8 34 34 H 1.08004 * 120.82812 * 180.19967 * 11 10 9 35 35 H 1.08993 * 109.46897 * 0.02562 * 13 12 11 36 36 H 0.96707 * 114.00034 * 59.99904 * 14 13 12 37 37 H 1.09001 * 110.08635 * 295.54206 * 20 7 6 38 38 H 1.09006 * 110.17432 * 173.98310 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8629 0.0000 0.0000 3 6 2.5000 1.7507 0.0000 4 6 2.5046 -0.9190 -1.5026 5 6 2.2487 -2.4156 -1.2673 6 6 2.9860 -2.8838 -0.0171 7 7 2.3717 -2.3571 1.2022 8 7 1.6687 -3.2047 2.0684 9 6 2.2923 -4.1706 2.6837 10 7 1.7419 -5.1609 3.4738 11 6 2.6179 -6.0656 4.0070 12 6 3.9037 -5.9247 3.7415 13 6 5.0308 -6.7987 4.2281 14 8 5.7090 -7.3694 3.1073 15 14 6.2274 -5.7732 5.2217 16 1 5.5226 -5.1801 6.3865 17 1 7.3377 -6.6346 5.7017 18 1 6.7754 -4.6876 4.3695 19 16 4.0353 -4.4984 2.6974 20 6 2.5050 -0.9169 1.5054 21 1 -0.3634 0.4929 0.9017 22 1 -0.3634 -1.0274 -0.0241 23 1 -0.3633 0.5344 -0.8777 24 1 2.1414 2.2679 0.8898 25 1 3.5899 1.7407 -0.0005 26 1 2.1414 2.2677 -0.8901 27 1 1.9731 -0.5878 -2.3947 28 1 3.5734 -0.7394 -1.6186 29 1 2.6020 -2.9824 -2.1287 30 1 1.1793 -2.5839 -1.1404 31 1 4.0213 -2.5467 -0.0678 32 1 2.9684 -3.9731 0.0178 33 1 0.7875 -5.2133 3.6390 34 1 2.2674 -6.8725 4.6334 35 1 4.6286 -7.5956 4.8534 36 1 6.0933 -6.7167 2.5059 37 1 3.5516 -0.6660 1.6781 38 1 1.9096 -0.6605 2.3818 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_16607524_15704118.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:38:29 Heat of formation + Delta-G solvation = 12.796273 kcal Electronic energy + Delta-G solvation = -18845.062571 eV Core-core repulsion = 15973.964683 eV Total energy + Delta-G solvation = -2871.097889 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 287.099 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.32065 -38.44143 -37.75626 -34.88318 -32.64194 -31.01009 -29.32641 -28.34489 -27.64471 -26.51941 -25.53693 -23.67231 -21.93387 -21.04909 -19.16674 -18.08113 -17.78082 -17.31974 -16.60809 -16.13261 -15.64159 -15.56768 -15.32828 -14.69917 -14.60989 -14.37753 -14.16307 -13.94775 -13.80077 -13.46995 -13.18638 -13.16559 -13.06361 -12.95115 -12.45602 -12.35925 -12.18056 -12.11027 -11.91628 -11.64400 -11.48498 -10.83780 -10.76795 -10.64120 -10.27098 -10.24711 -8.73787 -8.03716 0.03952 0.43471 0.92976 1.09335 1.24853 1.30128 1.44622 1.57886 1.81492 1.94323 1.96202 2.08140 2.65475 2.67154 3.52563 3.76470 3.99527 4.17377 4.37246 4.38165 4.49427 4.51155 4.66835 4.74751 4.78918 4.82212 4.83132 4.86039 4.86690 4.96738 5.03196 5.09704 5.28515 5.48474 5.57539 5.60395 5.65334 6.17776 6.33852 6.55489 7.39509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.453 4.453 2 Si 1.067 2.933 3 C -0.454 4.454 4 C -0.409 4.409 5 C -0.121 4.121 6 C 0.131 3.869 7 N -0.543 5.543 8 N -0.303 5.303 9 C 0.318 3.682 10 N -0.624 5.624 11 C 0.123 3.877 12 C -0.271 4.271 13 C -0.010 4.010 14 O -0.549 6.549 15 Si 0.958 3.042 16 H -0.257 1.257 17 H -0.257 1.257 18 H -0.268 1.268 19 S -0.069 6.069 20 C -0.149 4.149 21 H 0.064 0.936 22 H 0.057 0.943 23 H 0.071 0.929 24 H 0.070 0.930 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.434 0.566 34 H 0.224 0.776 35 H 0.155 0.845 36 H 0.383 0.617 37 H 0.051 0.949 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.401 -0.926 1.175 1.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.560 4.560 2 Si 1.257 2.743 3 C -0.563 4.563 4 C -0.495 4.495 5 C -0.160 4.160 6 C 0.006 3.994 7 N -0.367 5.367 8 N -0.126 5.126 9 C -0.068 4.068 10 N -0.251 5.251 11 C -0.008 4.008 12 C -0.394 4.394 13 C -0.124 4.124 14 O -0.355 6.355 15 Si 0.782 3.218 16 H -0.181 1.181 17 H -0.180 1.180 18 H -0.192 1.192 19 S 0.167 5.833 20 C -0.316 4.316 21 H 0.083 0.917 22 H 0.076 0.924 23 H 0.090 0.910 24 H 0.089 0.911 25 H 0.092 0.908 26 H 0.094 0.906 27 H 0.099 0.901 28 H 0.100 0.900 29 H 0.092 0.908 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.274 0.726 34 H 0.240 0.760 35 H 0.172 0.828 36 H 0.231 0.769 37 H 0.069 0.931 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.231 0.091 1.250 1.275 hybrid contribution -0.856 -0.699 0.242 1.131 sum -0.625 -0.609 1.492 1.729 Atomic orbital electron populations 1.26198 1.21967 1.03671 1.04125 0.78751 0.65845 0.64733 0.64928 1.26154 1.06697 1.18594 1.04812 1.26288 1.06603 1.01796 1.14787 1.21530 1.00622 0.96967 0.96925 1.21251 0.96016 0.97965 0.84208 1.49389 1.66187 1.03039 1.18067 1.75257 1.18641 1.06285 1.12439 1.27245 0.91152 0.95332 0.93056 1.42237 1.12032 1.24151 1.46640 1.21244 0.88556 0.93787 0.97202 1.24068 0.98688 1.04031 1.12603 1.24109 0.93913 1.00808 0.93527 1.86497 1.73540 1.37327 1.38101 0.85566 0.78750 0.78052 0.79409 1.18093 1.18041 1.19219 1.85815 1.06922 1.31528 1.59025 1.26988 1.04192 0.84820 1.15638 0.91656 0.92378 0.91029 0.91066 0.90773 0.90622 0.90057 0.89974 0.90831 0.92290 0.92036 0.92559 0.72572 0.76022 0.82802 0.76892 0.93079 0.90719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 -0.39 8.65 113.37 0.98 0.59 16 2 Si 1.07 -2.64 11.99 68.60 0.82 -1.82 16 3 C -0.45 1.30 8.65 113.37 0.98 2.28 16 4 C -0.41 0.64 5.03 72.20 0.36 1.01 16 5 C -0.12 -0.16 5.68 30.65 0.17 0.01 16 6 C 0.13 0.49 5.31 86.24 0.46 0.95 16 7 N -0.54 -3.22 3.01 -334.31 -1.00 -4.23 16 8 N -0.30 -2.48 11.39 -55.54 -0.63 -3.11 16 9 C 0.32 1.70 8.33 179.28 1.49 3.19 16 10 N -0.62 0.85 5.66 -194.49 -1.10 -0.25 16 11 C 0.12 -0.57 11.09 82.99 0.92 0.35 16 12 C -0.27 0.26 4.95 24.75 0.12 0.38 16 13 C -0.01 0.03 3.03 71.24 0.22 0.25 16 14 O -0.55 -0.01 12.88 -148.98 -1.92 -1.92 16 15 Si 0.96 -0.43 27.92 68.60 1.92 1.48 16 16 H -0.26 -0.29 7.11 99.48 0.71 0.42 16 17 H -0.26 -0.36 7.11 99.48 0.71 0.35 16 18 H -0.27 -0.86 7.11 99.48 0.71 -0.15 16 19 S -0.07 -0.31 21.29 -56.49 -1.20 -1.51 16 20 C -0.15 -0.41 5.80 127.52 0.74 0.33 16 21 H 0.06 0.07 7.96 -2.39 -0.02 0.05 16 22 H 0.06 0.23 7.96 -2.39 -0.02 0.21 16 23 H 0.07 -0.02 7.96 -2.39 -0.02 -0.04 16 24 H 0.07 -0.19 7.96 -2.39 -0.02 -0.21 16 25 H 0.07 -0.24 7.96 -2.39 -0.02 -0.26 16 26 H 0.07 -0.24 7.96 -2.38 -0.02 -0.26 16 27 H 0.08 -0.20 7.99 -2.39 -0.02 -0.22 16 28 H 0.08 -0.22 7.99 -2.39 -0.02 -0.24 16 29 H 0.07 0.01 8.14 -2.39 -0.02 -0.01 16 30 H 0.06 0.20 7.90 -2.39 -0.02 0.18 16 31 H 0.06 0.16 8.11 -2.39 -0.02 0.14 16 32 H 0.06 0.31 7.58 -2.39 -0.02 0.30 16 33 H 0.43 -2.45 8.96 -92.71 -0.83 -3.28 16 34 H 0.22 -3.06 8.06 -2.91 -0.02 -3.08 16 35 H 0.15 -1.39 7.94 -2.39 -0.02 -1.41 16 36 H 0.38 -1.31 8.70 -74.05 -0.64 -1.96 16 37 H 0.05 0.11 8.00 -2.39 -0.02 0.09 16 38 H 0.07 0.30 7.99 -2.38 -0.02 0.28 16 Total: 0.00 -14.81 327.10 3.66 -11.14 By element: Atomic # 1 Polarization: -9.45 SS G_CDS: 0.34 Total: -9.11 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: 6.45 Total: 9.34 kcal Atomic # 7 Polarization: -4.86 SS G_CDS: -2.74 Total: -7.59 kcal Atomic # 8 Polarization: -0.01 SS G_CDS: -1.92 Total: -1.92 kcal Atomic # 14 Polarization: -3.07 SS G_CDS: 2.74 Total: -0.34 kcal Atomic # 16 Polarization: -0.31 SS G_CDS: -1.20 Total: -1.51 kcal Total: -14.81 3.66 -11.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16607524_15704118.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.939 kcal (2) G-P(sol) polarization free energy of solvation -14.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds