Wall clock time and date at job start Mon Mar 8 2021 09:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52992 * 109.46934 * 2 1 4 4 C 1.53002 * 109.46744 * 119.99964 * 2 1 3 5 5 H 1.09002 * 109.47076 * 299.99816 * 4 2 1 6 6 C 1.52993 * 109.47287 * 59.99754 * 4 2 1 7 7 C 1.53004 * 109.47226 * 179.97438 * 6 4 2 8 8 C 1.52997 * 109.47406 * 300.00825 * 7 6 4 9 9 H 1.08999 * 109.46983 * 179.97438 * 8 7 6 10 10 N 1.46506 * 109.46691 * 299.99403 * 8 7 6 11 11 C 1.38600 * 120.00034 * 274.72463 * 10 8 7 12 12 N 1.29694 * 124.95083 * 359.69735 * 11 10 8 13 13 C 1.32125 * 116.86600 * 179.81584 * 12 11 10 14 14 C 1.33326 * 114.57969 * 0.46912 * 13 12 11 15 15 C 1.50694 * 125.95259 * 179.75287 * 14 13 12 16 16 O 1.42895 * 109.47390 * 299.97828 * 15 14 13 17 17 Si 1.86307 * 109.47186 * 179.97438 * 15 14 13 18 18 S 1.70966 * 124.94894 * 180.02562 * 11 10 8 19 19 C 1.52993 * 109.47602 * 59.99406 * 8 7 6 20 20 C 1.52997 * 109.46924 * 180.02562 * 4 2 1 21 21 H 1.09002 * 109.47184 * 300.00286 * 1 2 3 22 22 H 1.09004 * 109.47226 * 60.00293 * 1 2 3 23 23 H 1.08998 * 109.47154 * 179.97438 * 1 2 3 24 24 H 1.08992 * 109.47181 * 239.99706 * 2 1 3 25 25 H 1.08999 * 109.47252 * 299.99573 * 3 2 1 26 26 H 1.09002 * 109.47419 * 59.99857 * 3 2 1 27 27 H 1.09005 * 109.47157 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.47599 * 299.99836 * 6 4 2 29 29 H 1.09002 * 109.47012 * 60.00023 * 6 4 2 30 30 H 1.08995 * 109.47411 * 179.97438 * 7 6 4 31 31 H 1.09002 * 109.46655 * 60.00357 * 7 6 4 32 32 H 0.97005 * 119.99811 * 95.00317 * 10 8 7 33 33 H 1.07994 * 122.70967 * 180.23319 * 13 12 11 34 34 H 1.08999 * 109.47194 * 59.98101 * 15 14 13 35 35 H 0.96704 * 114.00244 * 179.97438 * 16 15 14 36 36 H 1.48494 * 109.99786 * 60.00226 * 17 15 14 37 37 H 1.48501 * 109.99701 * 181.31996 * 17 15 14 38 38 H 1.09002 * 109.47012 * 60.00129 * 19 8 7 39 39 H 1.08996 * 109.47599 * 180.02562 * 19 8 7 40 40 H 1.08995 * 109.47574 * 59.99416 * 20 4 2 41 41 H 1.09002 * 109.46832 * 299.99644 * 20 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 1.6766 -0.2074 2.1393 6 6 1.5299 -2.1637 1.2493 7 6 2.0403 -2.8851 2.4983 8 6 3.5703 -2.8851 2.4979 9 1 3.9339 -3.3986 3.3879 10 7 4.0582 -3.5756 1.3015 11 6 4.1960 -4.9548 1.3051 12 7 3.9273 -5.7257 2.3129 13 6 4.1137 -7.0221 2.1392 14 6 4.5694 -7.3602 0.9327 15 6 4.8752 -8.7589 0.4625 16 8 5.8834 -9.3323 1.2971 17 14 5.4837 -8.7032 -1.2976 18 16 4.7524 -5.8869 -0.0157 19 6 4.0803 -1.4427 2.4979 20 6 3.5699 -0.7207 1.2497 21 1 -0.3634 0.5139 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8933 -0.5138 -0.8899 25 1 1.6767 1.9563 -0.8900 26 1 1.6766 1.9563 0.8900 27 1 3.1300 1.4425 0.0005 28 1 0.4399 -2.1637 1.2493 29 1 1.8932 -2.6776 0.3594 30 1 1.6766 -3.9126 2.4986 31 1 1.6773 -2.3713 3.3885 32 1 4.2887 -3.0672 0.5081 33 1 3.9166 -7.7489 2.9133 34 1 3.9714 -9.3657 0.5153 35 1 6.1305 -10.2346 1.0522 36 1 6.7158 -7.8787 -1.3831 37 1 5.7585 -10.0792 -1.7837 38 1 3.7173 -0.9289 3.3880 39 1 5.1703 -1.4426 2.4971 40 1 3.9329 0.3070 1.2498 41 1 3.9336 -1.2344 0.3597 There are 50 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 50 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_16623130_15704118.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:18:42 Heat of formation + Delta-G solvation = -1.773983 kcal Electronic energy + Delta-G solvation = -20695.838569 eV Core-core repulsion = 17703.128642 eV Total energy + Delta-G solvation = -2992.709926 eV No. of doubly occupied orbitals = 50 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 283.135 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.06917 -40.09302 -37.97332 -37.04509 -34.23427 -32.00294 -31.32959 -29.80564 -28.09667 -26.47297 -24.69271 -23.79614 -23.39430 -21.49729 -20.83792 -19.86463 -19.36486 -18.54063 -17.48454 -16.85200 -16.40439 -16.04828 -15.71031 -15.54534 -15.13691 -15.00940 -14.76229 -14.42595 -14.38842 -14.14627 -13.94805 -13.45110 -13.17890 -13.13742 -12.74499 -12.67649 -12.42581 -12.32358 -12.25439 -12.09592 -12.08667 -11.77331 -11.41809 -11.35756 -10.86473 -10.77617 -10.61631 -10.15960 -10.05759 -8.59784 -5.04739 0.06671 0.16474 0.78443 1.27325 1.56083 1.93210 2.15387 2.25393 3.38537 3.57426 3.63319 3.70053 3.79704 3.97238 4.02718 4.08497 4.19605 4.28345 4.34082 4.44388 4.49003 4.52896 4.60512 4.62434 4.74175 4.76840 4.87792 4.90850 4.93950 4.97398 5.03175 5.07532 5.09945 5.17571 5.23229 5.25345 5.31375 5.39865 5.48339 5.54177 5.98235 6.16976 6.43558 7.13708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.092 4.092 3 C -0.151 4.151 4 C -0.083 4.083 5 H 0.072 0.928 6 C -0.114 4.114 7 C -0.130 4.130 8 C 0.161 3.839 9 H 0.090 0.910 10 N -0.684 5.684 11 C 0.329 3.671 12 N -0.550 5.550 13 C 0.120 3.880 14 C -0.263 4.263 15 C -0.017 4.017 16 O -0.534 6.534 17 Si 0.650 3.350 18 S 0.087 5.913 19 C -0.129 4.129 20 C -0.118 4.118 21 H 0.054 0.946 22 H 0.053 0.947 23 H 0.057 0.943 24 H 0.068 0.932 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.057 0.943 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.412 0.588 33 H 0.174 0.826 34 H 0.083 0.917 35 H 0.380 0.620 36 H -0.240 1.240 37 H -0.242 1.242 38 H 0.081 0.919 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.912 1.515 -2.458 3.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.110 4.110 3 C -0.208 4.208 4 C -0.101 4.101 5 H 0.090 0.910 6 C -0.151 4.151 7 C -0.169 4.169 8 C 0.055 3.945 9 H 0.108 0.892 10 N -0.325 5.325 11 C -0.042 4.042 12 N -0.276 5.276 13 C -0.031 4.031 14 C -0.386 4.386 15 C -0.130 4.130 16 O -0.342 6.342 17 Si 0.549 3.451 18 S 0.336 5.664 19 C -0.167 4.167 20 C -0.155 4.155 21 H 0.073 0.927 22 H 0.072 0.928 23 H 0.076 0.924 24 H 0.086 0.914 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.250 0.750 33 H 0.191 0.809 34 H 0.101 0.899 35 H 0.228 0.772 36 H -0.164 1.164 37 H -0.165 1.165 38 H 0.100 0.900 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.209 2.475 -3.087 4.137 hybrid contribution 0.388 -1.318 1.021 1.712 sum -0.821 1.157 -2.066 2.506 Atomic orbital electron populations 1.21904 0.95218 1.01898 1.01768 1.21136 0.95824 0.96115 0.97947 1.21911 1.01113 0.95967 1.01817 1.21239 0.94783 0.95833 0.98258 0.90977 1.21606 1.00618 0.94758 0.98160 1.21940 0.95042 1.01355 0.98581 1.21000 0.93854 0.92019 0.87641 0.89238 1.44254 1.71016 0.99882 1.17316 1.23729 0.96699 0.90809 0.92942 1.66488 1.28462 1.03896 1.28714 1.21284 0.95742 0.90597 0.95495 1.24261 1.18420 0.96901 0.98987 1.23684 0.94066 0.90641 1.04606 1.86616 1.58518 1.33739 1.55332 0.95255 0.87340 0.84966 0.77551 1.83914 1.66495 0.99125 1.16857 1.21860 1.01072 0.94238 0.99556 1.21649 0.95607 1.00819 0.97436 0.92706 0.92799 0.92371 0.91388 0.92780 0.92696 0.92430 0.91581 0.92092 0.91239 0.91039 0.74995 0.80933 0.89917 0.77152 1.16354 1.16533 0.90019 0.91192 0.91026 0.92402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.16 8.84 37.16 0.33 0.49 16 2 C -0.09 0.13 2.51 -90.62 -0.23 -0.09 16 3 C -0.15 0.21 8.84 37.15 0.33 0.54 16 4 C -0.08 0.15 1.78 -90.62 -0.16 -0.01 16 5 H 0.07 -0.09 8.14 -51.93 -0.42 -0.51 16 6 C -0.11 0.13 4.69 -26.73 -0.13 0.00 16 7 C -0.13 0.05 5.62 -26.73 -0.15 -0.10 16 8 C 0.16 -0.06 2.92 -67.93 -0.20 -0.26 16 9 H 0.09 0.13 7.75 -51.93 -0.40 -0.28 16 10 N -0.68 0.06 4.38 -55.79 -0.24 -0.18 16 11 C 0.33 0.71 8.06 -87.68 -0.71 0.00 16 12 N -0.55 -2.11 9.90 -15.21 -0.15 -2.26 16 13 C 0.12 0.38 11.22 -19.14 -0.21 0.17 16 14 C -0.26 -0.61 5.78 -36.03 -0.21 -0.82 16 15 C -0.02 -0.01 2.98 36.00 0.11 0.10 16 16 O -0.53 -0.83 12.84 -35.23 -0.45 -1.28 16 17 Si 0.65 -0.05 31.05 -169.99 -5.28 -5.33 16 18 S 0.09 0.11 20.57 -107.50 -2.21 -2.10 16 19 C -0.13 0.24 5.61 -26.75 -0.15 0.09 16 20 C -0.12 0.27 4.68 -26.75 -0.13 0.14 16 21 H 0.05 -0.05 8.14 -51.93 -0.42 -0.47 16 22 H 0.05 -0.05 8.14 -51.93 -0.42 -0.47 16 23 H 0.06 -0.06 6.43 -51.93 -0.33 -0.39 16 24 H 0.07 -0.08 8.14 -51.93 -0.42 -0.51 16 25 H 0.05 -0.06 8.14 -51.93 -0.42 -0.48 16 26 H 0.05 -0.06 8.14 -51.93 -0.42 -0.49 16 27 H 0.06 -0.10 6.43 -51.93 -0.33 -0.43 16 28 H 0.07 -0.05 6.43 -51.93 -0.33 -0.38 16 29 H 0.06 -0.04 7.60 -51.93 -0.39 -0.43 16 30 H 0.07 0.11 8.14 -51.93 -0.42 -0.31 16 31 H 0.07 -0.05 8.14 -51.93 -0.42 -0.47 16 32 H 0.41 -0.70 6.99 -40.82 -0.29 -0.98 16 33 H 0.17 0.33 8.06 -52.49 -0.42 -0.09 16 34 H 0.08 -0.11 7.96 -51.93 -0.41 -0.53 16 35 H 0.38 -1.02 8.74 45.56 0.40 -0.62 16 36 H -0.24 -0.74 7.11 56.52 0.40 -0.34 16 37 H -0.24 -0.28 7.11 56.52 0.40 0.12 16 38 H 0.08 -0.17 8.14 -51.93 -0.42 -0.59 16 39 H 0.07 -0.11 8.14 -51.93 -0.42 -0.54 16 40 H 0.07 -0.16 6.43 -51.93 -0.33 -0.49 16 41 H 0.06 -0.15 6.51 -51.93 -0.34 -0.48 16 LS Contribution 327.23 15.07 4.93 4.93 Total: 0.00 -4.62 327.23 -11.53 -16.15 By element: Atomic # 1 Polarization: -3.56 SS G_CDS: -6.62 Total: -10.18 kcal Atomic # 6 Polarization: 1.75 SS G_CDS: -1.50 Total: 0.24 kcal Atomic # 7 Polarization: -2.05 SS G_CDS: -0.40 Total: -2.44 kcal Atomic # 8 Polarization: -0.83 SS G_CDS: -0.45 Total: -1.28 kcal Atomic # 14 Polarization: -0.05 SS G_CDS: -5.28 Total: -5.33 kcal Atomic # 16 Polarization: 0.11 SS G_CDS: -2.21 Total: -2.10 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -4.62 -11.53 -16.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16623130_15704118.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.379 kcal (2) G-P(sol) polarization free energy of solvation -4.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds