Wall clock time and date at job start Mon Mar 8 2021 09:18:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52992 * 109.46934 * 2 1 4 4 C 1.53002 * 109.46744 * 119.99964 * 2 1 3 5 5 H 1.09002 * 109.47076 * 299.99816 * 4 2 1 6 6 C 1.52993 * 109.47287 * 59.99754 * 4 2 1 7 7 C 1.53004 * 109.47226 * 179.97438 * 6 4 2 8 8 C 1.52997 * 109.47406 * 300.00825 * 7 6 4 9 9 H 1.08999 * 109.46983 * 179.97438 * 8 7 6 10 10 N 1.46506 * 109.46691 * 299.99403 * 8 7 6 11 11 C 1.38600 * 120.00034 * 274.72463 * 10 8 7 12 12 N 1.29694 * 124.95083 * 359.69735 * 11 10 8 13 13 C 1.32125 * 116.86600 * 179.81584 * 12 11 10 14 14 C 1.33326 * 114.57969 * 0.46912 * 13 12 11 15 15 C 1.50694 * 125.95259 * 179.75287 * 14 13 12 16 16 O 1.42895 * 109.47390 * 299.97828 * 15 14 13 17 17 Si 1.86307 * 109.47186 * 179.97438 * 15 14 13 18 18 S 1.70966 * 124.94894 * 180.02562 * 11 10 8 19 19 C 1.52993 * 109.47602 * 59.99406 * 8 7 6 20 20 C 1.52997 * 109.46924 * 180.02562 * 4 2 1 21 21 H 1.09002 * 109.47184 * 300.00286 * 1 2 3 22 22 H 1.09004 * 109.47226 * 60.00293 * 1 2 3 23 23 H 1.08998 * 109.47154 * 179.97438 * 1 2 3 24 24 H 1.08992 * 109.47181 * 239.99706 * 2 1 3 25 25 H 1.08999 * 109.47252 * 299.99573 * 3 2 1 26 26 H 1.09002 * 109.47419 * 59.99857 * 3 2 1 27 27 H 1.09005 * 109.47157 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.47599 * 299.99836 * 6 4 2 29 29 H 1.09002 * 109.47012 * 60.00023 * 6 4 2 30 30 H 1.08995 * 109.47411 * 179.97438 * 7 6 4 31 31 H 1.09002 * 109.46655 * 60.00357 * 7 6 4 32 32 H 0.97005 * 119.99811 * 95.00317 * 10 8 7 33 33 H 1.07994 * 122.70967 * 180.23319 * 13 12 11 34 34 H 1.08999 * 109.47194 * 59.98101 * 15 14 13 35 35 H 0.96704 * 114.00244 * 179.97438 * 16 15 14 36 36 H 1.48494 * 109.99786 * 60.00226 * 17 15 14 37 37 H 1.48501 * 109.99701 * 181.31996 * 17 15 14 38 38 H 1.09002 * 109.47012 * 60.00129 * 19 8 7 39 39 H 1.08996 * 109.47599 * 180.02562 * 19 8 7 40 40 H 1.08995 * 109.47574 * 59.99416 * 20 4 2 41 41 H 1.09002 * 109.46832 * 299.99644 * 20 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 1.6766 -0.2074 2.1393 6 6 1.5299 -2.1637 1.2493 7 6 2.0403 -2.8851 2.4983 8 6 3.5703 -2.8851 2.4979 9 1 3.9339 -3.3986 3.3879 10 7 4.0582 -3.5756 1.3015 11 6 4.1960 -4.9548 1.3051 12 7 3.9273 -5.7257 2.3129 13 6 4.1137 -7.0221 2.1392 14 6 4.5694 -7.3602 0.9327 15 6 4.8752 -8.7589 0.4625 16 8 5.8834 -9.3323 1.2971 17 14 5.4837 -8.7032 -1.2976 18 16 4.7524 -5.8869 -0.0157 19 6 4.0803 -1.4427 2.4979 20 6 3.5699 -0.7207 1.2497 21 1 -0.3634 0.5139 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8933 -0.5138 -0.8899 25 1 1.6767 1.9563 -0.8900 26 1 1.6766 1.9563 0.8900 27 1 3.1300 1.4425 0.0005 28 1 0.4399 -2.1637 1.2493 29 1 1.8932 -2.6776 0.3594 30 1 1.6766 -3.9126 2.4986 31 1 1.6773 -2.3713 3.3885 32 1 4.2887 -3.0672 0.5081 33 1 3.9166 -7.7489 2.9133 34 1 3.9714 -9.3657 0.5153 35 1 6.1305 -10.2346 1.0522 36 1 6.7158 -7.8787 -1.3831 37 1 5.7585 -10.0792 -1.7837 38 1 3.7173 -0.9289 3.3880 39 1 5.1703 -1.4426 2.4971 40 1 3.9329 0.3070 1.2498 41 1 3.9336 -1.2344 0.3597 There are 50 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 50 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_16623130_15704118.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:18:41 Heat of formation + Delta-G solvation = 4.929913 kcal Electronic energy + Delta-G solvation = -20695.547866 eV Core-core repulsion = 17703.128642 eV Total energy + Delta-G solvation = -2992.419224 eV No. of doubly occupied orbitals = 50 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 283.135 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.10549 -40.14126 -38.01843 -37.03105 -34.23433 -31.93454 -31.40443 -29.77529 -27.99954 -26.57140 -24.74987 -23.78303 -23.31216 -21.53107 -20.75643 -19.92891 -19.41155 -18.58803 -17.56838 -16.82668 -16.40387 -16.12747 -15.75480 -15.58137 -15.11463 -14.98159 -14.70730 -14.51161 -14.33537 -14.10458 -14.03496 -13.37399 -13.13984 -13.06618 -12.80169 -12.60354 -12.48115 -12.37487 -12.31744 -12.02700 -12.00465 -11.68030 -11.40657 -11.28319 -10.80635 -10.77158 -10.67285 -10.26600 -10.18588 -8.69156 -5.05534 -0.06223 0.04901 0.66035 1.23215 1.52297 1.88088 1.98617 2.21791 3.42859 3.61714 3.69620 3.73735 3.80704 3.96580 4.05896 4.14953 4.27181 4.35226 4.41838 4.47600 4.57938 4.60899 4.67886 4.69484 4.73215 4.82983 4.84313 4.97494 5.01914 5.03992 5.13005 5.13964 5.19318 5.20976 5.24665 5.32904 5.39271 5.44764 5.58063 5.64219 5.90245 6.17503 6.59092 7.02984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.089 4.089 3 C -0.150 4.150 4 C -0.076 4.076 5 H 0.070 0.930 6 C -0.108 4.108 7 C -0.124 4.124 8 C 0.164 3.836 9 H 0.070 0.930 10 N -0.675 5.675 11 C 0.320 3.680 12 N -0.576 5.576 13 C 0.103 3.897 14 C -0.273 4.273 15 C -0.025 4.025 16 O -0.556 6.556 17 Si 0.717 3.283 18 S 0.105 5.895 19 C -0.122 4.122 20 C -0.114 4.114 21 H 0.052 0.948 22 H 0.051 0.949 23 H 0.056 0.944 24 H 0.068 0.932 25 H 0.050 0.950 26 H 0.052 0.948 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.048 0.952 31 H 0.075 0.925 32 H 0.420 0.580 33 H 0.178 0.822 34 H 0.106 0.894 35 H 0.397 0.603 36 H -0.285 1.285 37 H -0.254 1.254 38 H 0.087 0.913 39 H 0.071 0.929 40 H 0.077 0.923 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.940 1.810 -3.034 4.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.108 4.108 3 C -0.207 4.207 4 C -0.095 4.095 5 H 0.088 0.912 6 C -0.145 4.145 7 C -0.164 4.164 8 C 0.058 3.942 9 H 0.088 0.912 10 N -0.317 5.317 11 C -0.051 4.051 12 N -0.303 5.303 13 C -0.048 4.048 14 C -0.395 4.395 15 C -0.137 4.137 16 O -0.366 6.366 17 Si 0.619 3.381 18 S 0.354 5.646 19 C -0.160 4.160 20 C -0.152 4.152 21 H 0.071 0.929 22 H 0.070 0.930 23 H 0.075 0.925 24 H 0.086 0.914 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.067 0.933 31 H 0.094 0.906 32 H 0.260 0.740 33 H 0.195 0.805 34 H 0.124 0.876 35 H 0.248 0.752 36 H -0.212 1.212 37 H -0.179 1.179 38 H 0.105 0.895 39 H 0.090 0.910 40 H 0.096 0.904 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.252 2.767 -3.669 4.762 hybrid contribution 0.424 -1.415 1.207 1.908 sum -0.828 1.352 -2.462 2.928 Atomic orbital electron populations 1.21907 0.95573 1.01755 1.01595 1.21109 0.95504 0.96195 0.97966 1.21904 1.01447 0.95784 1.01595 1.21168 0.95153 0.95093 0.98072 0.91197 1.21542 1.00387 0.95127 0.97482 1.21864 0.95022 1.00225 0.99241 1.20959 0.93768 0.92698 0.86822 0.91172 1.44302 1.70404 0.99214 1.17743 1.23936 0.96580 0.91498 0.93085 1.66480 1.29590 1.04430 1.29778 1.21436 0.96522 0.90671 0.96175 1.24571 1.17926 0.98045 0.99000 1.23911 0.94987 0.90135 1.04646 1.86568 1.58864 1.35242 1.55974 0.94490 0.84874 0.82494 0.76207 1.83775 1.66146 0.98535 1.16141 1.21810 1.01099 0.93013 1.00107 1.21633 0.95071 1.01143 0.97341 0.92897 0.92955 0.92504 0.91387 0.93049 0.92883 0.91887 0.91890 0.92394 0.93330 0.90625 0.74005 0.80550 0.87641 0.75201 1.21171 1.17887 0.89489 0.91037 0.90433 0.91867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.34 8.84 71.98 0.64 0.97 16 2 C -0.09 0.30 2.51 -10.80 -0.03 0.27 16 3 C -0.15 0.51 8.84 71.98 0.64 1.15 16 4 C -0.08 0.30 1.78 -10.80 -0.02 0.28 16 5 H 0.07 -0.21 8.14 -2.39 -0.02 -0.23 16 6 C -0.11 0.22 4.69 30.59 0.14 0.36 16 7 C -0.12 0.00 5.62 30.59 0.17 0.17 16 8 C 0.16 -0.03 2.92 44.99 0.13 0.10 16 9 H 0.07 0.29 7.75 -2.39 -0.02 0.27 16 10 N -0.68 -0.17 4.38 -330.41 -1.45 -1.62 16 11 C 0.32 1.63 8.06 179.32 1.45 3.07 16 12 N -0.58 -5.16 9.90 -202.03 -2.00 -7.16 16 13 C 0.10 0.76 11.22 83.54 0.94 1.70 16 14 C -0.27 -1.38 5.78 24.57 0.14 -1.24 16 15 C -0.02 -0.02 2.98 71.23 0.21 0.19 16 16 O -0.56 -1.70 12.84 -148.98 -1.91 -3.61 16 17 Si 0.72 -0.22 31.05 68.60 2.13 1.91 16 18 S 0.11 0.31 20.57 -56.49 -1.16 -0.85 16 19 C -0.12 0.49 5.61 30.58 0.17 0.67 16 20 C -0.11 0.61 4.68 30.58 0.14 0.75 16 21 H 0.05 -0.09 8.14 -2.39 -0.02 -0.11 16 22 H 0.05 -0.10 8.14 -2.38 -0.02 -0.11 16 23 H 0.06 -0.11 6.43 -2.39 -0.02 -0.12 16 24 H 0.07 -0.21 8.14 -2.39 -0.02 -0.23 16 25 H 0.05 -0.14 8.14 -2.39 -0.02 -0.15 16 26 H 0.05 -0.15 8.14 -2.39 -0.02 -0.17 16 27 H 0.06 -0.28 6.43 -2.38 -0.02 -0.29 16 28 H 0.06 -0.07 6.43 -2.39 -0.02 -0.09 16 29 H 0.06 -0.07 7.60 -2.39 -0.02 -0.09 16 30 H 0.05 0.22 8.14 -2.39 -0.02 0.20 16 31 H 0.08 -0.07 8.14 -2.39 -0.02 -0.09 16 32 H 0.42 -1.48 6.99 -92.70 -0.65 -2.13 16 33 H 0.18 0.90 8.06 -2.91 -0.02 0.88 16 34 H 0.11 -0.40 7.96 -2.39 -0.02 -0.41 16 35 H 0.40 -2.26 8.74 -74.05 -0.65 -2.91 16 36 H -0.28 -2.06 7.11 99.48 0.71 -1.35 16 37 H -0.25 -0.44 7.11 99.48 0.71 0.27 16 38 H 0.09 -0.41 8.14 -2.39 -0.02 -0.43 16 39 H 0.07 -0.27 8.14 -2.39 -0.02 -0.29 16 40 H 0.08 -0.45 6.43 -2.39 -0.02 -0.46 16 41 H 0.06 -0.38 6.51 -2.39 -0.02 -0.40 16 Total: 0.00 -11.41 327.23 0.10 -11.31 By element: Atomic # 1 Polarization: -8.20 SS G_CDS: -0.23 Total: -8.44 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: 4.72 Total: 8.45 kcal Atomic # 7 Polarization: -5.33 SS G_CDS: -3.45 Total: -8.78 kcal Atomic # 8 Polarization: -1.70 SS G_CDS: -1.91 Total: -3.61 kcal Atomic # 14 Polarization: -0.22 SS G_CDS: 2.13 Total: 1.91 kcal Atomic # 16 Polarization: 0.31 SS G_CDS: -1.16 Total: -0.85 kcal Total: -11.41 0.10 -11.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16623130_15704118.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.241 kcal (2) G-P(sol) polarization free energy of solvation -11.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds