Wall clock time and date at job start Mon Mar 8 2021 09:18:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86297 * 109.47348 * 2 1 4 4 C 1.50702 * 109.47235 * 239.99734 * 2 1 3 5 5 C 1.33331 * 125.95218 * 299.97099 * 4 2 1 6 6 N 1.32115 * 114.58076 * 180.02562 * 5 4 2 7 7 C 1.29694 * 116.86485 * 0.02562 * 6 5 4 8 8 N 1.38609 * 124.94841 * 179.97438 * 7 6 5 9 9 C 1.46508 * 120.00081 * 0.02562 * 8 7 6 10 10 H 1.08998 * 109.47037 * 325.00720 * 9 8 7 11 11 C 1.52999 * 109.46785 * 85.00401 * 9 8 7 12 12 C 1.52996 * 109.47395 * 59.99758 * 11 9 8 13 13 C 1.52997 * 109.47045 * 60.00184 * 12 11 9 14 14 H 1.08999 * 109.47410 * 59.99754 * 13 12 11 15 15 N 1.46505 * 109.47209 * 180.02562 * 13 12 11 16 16 O 1.21802 * 119.99753 * 239.99783 * 15 13 12 17 17 O 1.21800 * 119.99909 * 60.00325 * 15 13 12 18 18 C 1.53001 * 109.47101 * 299.99831 * 13 12 11 19 19 C 1.52997 * 109.47282 * 204.99989 * 9 8 7 20 20 S 1.70958 * 110.10068 * 359.97438 * 7 6 5 21 21 H 0.96693 * 113.99537 * 300.00084 * 1 2 3 22 22 H 1.09003 * 109.46831 * 120.00213 * 2 1 3 23 23 H 1.48498 * 110.00057 * 178.68151 * 3 2 1 24 24 H 1.48495 * 109.99775 * 299.99842 * 3 2 1 25 25 H 1.08003 * 122.70898 * 0.05162 * 5 4 2 26 26 H 0.96995 * 120.00429 * 180.02562 * 8 7 6 27 27 H 1.09003 * 109.47359 * 180.02562 * 11 9 8 28 28 H 1.09005 * 109.47020 * 299.99987 * 11 9 8 29 29 H 1.09004 * 109.47609 * 300.00114 * 12 11 9 30 30 H 1.09001 * 109.47381 * 179.97438 * 12 11 9 31 31 H 1.08999 * 109.47449 * 300.00268 * 18 13 12 32 32 H 1.08998 * 109.47246 * 179.97438 * 18 13 12 33 33 H 1.09001 * 109.46788 * 60.00398 * 19 9 8 34 34 H 1.08999 * 109.47410 * 180.02562 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7105 -1.2304 5 6 1.6840 -1.9791 -1.5577 6 7 2.2389 -2.3727 -2.6902 7 6 2.9438 -1.4947 -3.3337 8 7 3.5979 -1.7264 -4.5336 9 6 3.5202 -3.0449 -5.1676 10 1 3.4974 -3.8170 -4.3986 11 6 2.2481 -3.1298 -6.0134 12 6 2.2801 -2.0460 -7.0928 13 6 3.5029 -2.2541 -7.9885 14 1 3.4451 -3.2351 -8.4602 15 7 3.5338 -1.2159 -9.0217 16 8 3.4949 -1.5268 -10.1988 17 8 3.5985 -0.0419 -8.7037 18 6 4.7750 -2.1691 -7.1427 19 6 4.7430 -3.2530 -6.0632 20 16 2.9487 -0.0098 -2.4864 21 1 -0.3932 0.4417 0.7650 22 1 1.7923 -0.5139 0.8900 23 1 3.5347 1.7702 0.0321 24 1 1.5616 2.4678 -1.2085 25 1 1.0785 -2.6320 -0.9465 26 1 4.1071 -1.0157 -4.9536 27 1 2.1900 -4.1110 -6.4848 28 1 1.3769 -2.9815 -5.3753 29 1 2.3379 -1.0650 -6.6212 30 1 1.3740 -2.1068 -7.6957 31 1 4.8328 -1.1882 -6.6709 32 1 5.6461 -2.3178 -7.7807 33 1 5.6493 -3.1925 -5.4606 34 1 4.6850 -4.2338 -6.5353 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_16623256_15704118.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:18:58 Heat of formation + Delta-G solvation = 13.917687 kcal Electronic energy + Delta-G solvation = -20751.011136 eV Core-core repulsion = 17394.578073 eV Total energy + Delta-G solvation = -3356.433063 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 286.082 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.37300 -41.13103 -40.01226 -37.85312 -37.40889 -35.91368 -32.66293 -32.45033 -31.08314 -27.44268 -26.59605 -24.64541 -24.45064 -23.44237 -21.86579 -20.29218 -19.98259 -19.60812 -19.22082 -18.53326 -18.27850 -17.70577 -16.94601 -16.69584 -15.91299 -15.73114 -15.62343 -15.23188 -14.87718 -14.63510 -14.32751 -14.21144 -13.91017 -13.81508 -13.02215 -12.82136 -12.70741 -12.49010 -12.48045 -12.40243 -12.13425 -12.05457 -12.00079 -11.73256 -11.31711 -10.70350 -10.39750 -10.20259 -8.86363 -5.25370 -0.45779 -0.12505 0.01339 0.59252 0.62716 1.18562 1.53973 1.88788 1.93153 1.96426 2.71547 2.79857 3.18172 3.28722 3.38068 3.44963 3.51795 3.66093 3.70883 3.78447 3.91889 4.02883 4.11507 4.35439 4.36113 4.45818 4.49996 4.55758 4.66411 4.69508 4.80633 5.02930 5.32234 5.67804 5.86182 6.53754 6.59369 6.88657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.545 6.545 2 C -0.017 4.017 3 Si 0.668 3.332 4 C -0.259 4.259 5 C 0.122 3.878 6 N -0.545 5.545 7 C 0.327 3.673 8 N -0.690 5.690 9 C 0.156 3.844 10 H 0.105 0.895 11 C -0.126 4.126 12 C -0.123 4.123 13 C 0.017 3.983 14 H 0.138 0.862 15 N -0.018 5.018 16 O -0.161 6.161 17 O -0.158 6.158 18 C -0.127 4.127 19 C -0.123 4.123 20 S 0.075 5.925 21 H 0.384 0.616 22 H 0.082 0.918 23 H -0.242 1.242 24 H -0.238 1.238 25 H 0.179 0.821 26 H 0.413 0.587 27 H 0.084 0.916 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.964 -1.524 5.427 5.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.352 6.352 2 C -0.131 4.131 3 Si 0.567 3.433 4 C -0.381 4.381 5 C -0.029 4.029 6 N -0.270 5.270 7 C -0.043 4.043 8 N -0.332 5.332 9 C 0.049 3.951 10 H 0.123 0.877 11 C -0.165 4.165 12 C -0.161 4.161 13 C -0.080 4.080 14 H 0.156 0.844 15 N 0.505 4.495 16 O -0.380 6.380 17 O -0.379 6.379 18 C -0.165 4.165 19 C -0.161 4.161 20 S 0.323 5.677 21 H 0.232 0.768 22 H 0.100 0.900 23 H -0.166 1.166 24 H -0.162 1.162 25 H 0.196 0.804 26 H 0.252 0.748 27 H 0.102 0.898 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.101 0.899 31 H 0.106 0.894 32 H 0.107 0.893 33 H 0.110 0.890 34 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.918 -1.528 4.514 5.138 hybrid contribution -0.319 -0.603 -0.130 0.694 sum 1.599 -2.131 4.384 5.130 Atomic orbital electron populations 1.86509 1.17104 1.81757 1.49812 1.23677 0.85507 1.09265 0.94658 0.95097 0.81809 0.78175 0.88210 1.24314 1.12674 0.97742 1.03370 1.21336 0.96858 0.93048 0.91650 1.66468 1.17055 1.33103 1.10368 1.23778 0.95151 0.93324 0.92025 1.44203 1.54940 1.14575 1.19461 1.21071 0.93919 0.85086 0.94991 0.87711 1.21964 0.99769 0.98392 0.96401 1.21875 0.94628 1.02724 0.96910 1.24378 1.01323 0.92190 0.90115 0.84444 1.44909 0.97740 1.03497 1.03395 1.94593 1.52309 1.87852 1.03264 1.94554 1.51954 1.03737 1.87672 1.21897 0.94518 1.02266 0.97809 1.21863 0.99068 0.99166 0.96025 1.84199 1.51620 1.14317 1.17538 0.76826 0.89998 1.16577 1.16207 0.80418 0.74848 0.89750 0.89152 0.89151 0.89887 0.89435 0.89304 0.88966 0.88803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.12 12.85 -35.23 -0.45 -0.33 16 2 C -0.02 0.01 2.98 36.01 0.11 0.11 16 3 Si 0.67 -0.64 31.05 -169.99 -5.28 -5.92 16 4 C -0.26 -0.55 5.78 -36.02 -0.21 -0.76 16 5 C 0.12 0.29 11.22 -19.14 -0.21 0.07 16 6 N -0.54 -1.45 9.90 -15.21 -0.15 -1.60 16 7 C 0.33 0.46 8.06 -87.68 -0.71 -0.25 16 8 N -0.69 0.96 4.39 -55.78 -0.24 0.71 16 9 C 0.16 -0.43 2.92 -67.93 -0.20 -0.63 16 10 H 0.10 -0.17 7.76 -51.93 -0.40 -0.58 16 11 C -0.13 0.33 5.62 -26.73 -0.15 0.18 16 12 C -0.12 0.23 5.15 -26.73 -0.14 0.09 16 13 C 0.02 -0.03 2.88 -67.93 -0.20 -0.23 16 14 H 0.14 -0.46 8.09 -51.93 -0.42 -0.88 16 15 N -0.02 -0.04 3.82 -4.89 -0.02 -0.06 16 16 O -0.16 -0.68 19.21 -29.46 -0.57 -1.25 16 17 O -0.16 -0.61 18.50 -29.46 -0.55 -1.16 16 18 C -0.13 0.44 5.13 -26.73 -0.14 0.30 16 19 C -0.12 0.57 5.61 -26.73 -0.15 0.42 16 20 S 0.07 0.14 20.57 -107.50 -2.21 -2.07 16 21 H 0.38 -2.05 8.74 45.56 0.40 -1.65 16 22 H 0.08 -0.19 7.96 -51.93 -0.41 -0.60 16 23 H -0.24 -0.32 7.11 56.52 0.40 0.09 16 24 H -0.24 -0.57 7.11 56.52 0.40 -0.17 16 25 H 0.18 0.13 8.06 -52.48 -0.42 -0.29 16 26 H 0.41 -1.07 6.99 -40.82 -0.29 -1.35 16 27 H 0.08 -0.34 8.14 -51.93 -0.42 -0.76 16 28 H 0.09 -0.06 8.14 -51.93 -0.42 -0.48 16 29 H 0.09 -0.06 7.49 -51.93 -0.39 -0.45 16 30 H 0.08 -0.11 8.14 -51.93 -0.42 -0.53 16 31 H 0.09 -0.28 6.39 -51.93 -0.33 -0.61 16 32 H 0.09 -0.30 8.14 -51.93 -0.42 -0.73 16 33 H 0.09 -0.44 8.14 -51.93 -0.42 -0.87 16 34 H 0.09 -0.54 8.14 -51.93 -0.42 -0.96 16 LS Contribution 300.16 15.07 4.52 4.52 Total: 0.00 -7.72 300.16 -10.94 -18.66 By element: Atomic # 1 Polarization: -6.81 SS G_CDS: -4.00 Total: -10.81 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: -1.99 Total: -0.70 kcal Atomic # 7 Polarization: -0.53 SS G_CDS: -0.41 Total: -0.94 kcal Atomic # 8 Polarization: -1.18 SS G_CDS: -1.56 Total: -2.74 kcal Atomic # 14 Polarization: -0.64 SS G_CDS: -5.28 Total: -5.92 kcal Atomic # 16 Polarization: 0.14 SS G_CDS: -2.21 Total: -2.07 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -7.72 -10.94 -18.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16623256_15704118.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.578 kcal (2) G-P(sol) polarization free energy of solvation -7.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.660 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds