Wall clock time and date at job start Mon Mar 8 2021 09:18:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86297 * 109.47348 * 2 1 4 4 C 1.50702 * 109.47235 * 239.99734 * 2 1 3 5 5 C 1.33331 * 125.95218 * 299.97099 * 4 2 1 6 6 N 1.32115 * 114.58076 * 180.02562 * 5 4 2 7 7 C 1.29694 * 116.86485 * 0.02562 * 6 5 4 8 8 N 1.38609 * 124.94841 * 179.97438 * 7 6 5 9 9 C 1.46508 * 120.00081 * 0.02562 * 8 7 6 10 10 H 1.08998 * 109.47037 * 325.00720 * 9 8 7 11 11 C 1.52999 * 109.46785 * 85.00401 * 9 8 7 12 12 C 1.52996 * 109.47395 * 59.99758 * 11 9 8 13 13 C 1.52997 * 109.47045 * 60.00184 * 12 11 9 14 14 H 1.08999 * 109.47410 * 59.99754 * 13 12 11 15 15 N 1.46505 * 109.47209 * 180.02562 * 13 12 11 16 16 O 1.21802 * 119.99753 * 239.99783 * 15 13 12 17 17 O 1.21800 * 119.99909 * 60.00325 * 15 13 12 18 18 C 1.53001 * 109.47101 * 299.99831 * 13 12 11 19 19 C 1.52997 * 109.47282 * 204.99989 * 9 8 7 20 20 S 1.70958 * 110.10068 * 359.97438 * 7 6 5 21 21 H 0.96693 * 113.99537 * 300.00084 * 1 2 3 22 22 H 1.09003 * 109.46831 * 120.00213 * 2 1 3 23 23 H 1.48498 * 110.00057 * 178.68151 * 3 2 1 24 24 H 1.48495 * 109.99775 * 299.99842 * 3 2 1 25 25 H 1.08003 * 122.70898 * 0.05162 * 5 4 2 26 26 H 0.96995 * 120.00429 * 180.02562 * 8 7 6 27 27 H 1.09003 * 109.47359 * 180.02562 * 11 9 8 28 28 H 1.09005 * 109.47020 * 299.99987 * 11 9 8 29 29 H 1.09004 * 109.47609 * 300.00114 * 12 11 9 30 30 H 1.09001 * 109.47381 * 179.97438 * 12 11 9 31 31 H 1.08999 * 109.47449 * 300.00268 * 18 13 12 32 32 H 1.08998 * 109.47246 * 179.97438 * 18 13 12 33 33 H 1.09001 * 109.46788 * 60.00398 * 19 9 8 34 34 H 1.08999 * 109.47410 * 180.02562 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7105 -1.2304 5 6 1.6840 -1.9791 -1.5577 6 7 2.2389 -2.3727 -2.6902 7 6 2.9438 -1.4947 -3.3337 8 7 3.5979 -1.7264 -4.5336 9 6 3.5202 -3.0449 -5.1676 10 1 3.4974 -3.8170 -4.3986 11 6 2.2481 -3.1298 -6.0134 12 6 2.2801 -2.0460 -7.0928 13 6 3.5029 -2.2541 -7.9885 14 1 3.4451 -3.2351 -8.4602 15 7 3.5338 -1.2159 -9.0217 16 8 3.4949 -1.5268 -10.1988 17 8 3.5985 -0.0419 -8.7037 18 6 4.7750 -2.1691 -7.1427 19 6 4.7430 -3.2530 -6.0632 20 16 2.9487 -0.0098 -2.4864 21 1 -0.3932 0.4417 0.7650 22 1 1.7923 -0.5139 0.8900 23 1 3.5347 1.7702 0.0321 24 1 1.5616 2.4678 -1.2085 25 1 1.0785 -2.6320 -0.9465 26 1 4.1071 -1.0157 -4.9536 27 1 2.1900 -4.1110 -6.4848 28 1 1.3769 -2.9815 -5.3753 29 1 2.3379 -1.0650 -6.6212 30 1 1.3740 -2.1068 -7.6957 31 1 4.8328 -1.1882 -6.6709 32 1 5.6461 -2.3178 -7.7807 33 1 5.6493 -3.1925 -5.4606 34 1 4.6850 -4.2338 -6.5353 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_16623256_15704118.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:18:58 Heat of formation + Delta-G solvation = 15.700986 kcal Electronic energy + Delta-G solvation = -20750.933807 eV Core-core repulsion = 17394.578073 eV Total energy + Delta-G solvation = -3356.355733 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 286.082 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.48041 -41.13105 -39.97063 -37.79649 -37.61001 -35.87497 -32.54907 -32.31981 -31.07743 -27.48354 -26.61739 -24.68172 -24.23741 -23.43005 -21.80925 -20.31368 -20.05958 -19.61756 -19.24113 -18.46341 -18.36343 -17.71746 -16.85703 -16.59699 -15.89598 -15.65911 -15.61091 -15.19145 -14.76936 -14.59326 -14.35730 -14.07805 -13.70533 -13.65178 -12.98080 -12.79733 -12.71287 -12.60563 -12.53010 -12.32269 -12.26184 -12.16797 -11.98883 -11.66583 -11.26706 -10.79261 -10.45164 -10.24340 -8.89366 -5.21280 -0.73080 -0.21213 -0.06011 0.49775 0.60473 1.22321 1.54588 1.84272 1.90794 1.99375 2.88355 2.94070 3.37990 3.47339 3.49723 3.57574 3.65396 3.84128 3.87737 3.95884 4.02976 4.24011 4.29723 4.47558 4.57347 4.60118 4.67049 4.75496 4.77385 4.86307 4.99796 5.04766 5.14781 5.69777 5.94057 6.30177 6.80110 6.90531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.563 6.563 2 C -0.021 4.021 3 Si 0.751 3.249 4 C -0.273 4.273 5 C 0.111 3.889 6 N -0.562 5.562 7 C 0.331 3.669 8 N -0.682 5.682 9 C 0.155 3.845 10 H 0.099 0.901 11 C -0.118 4.118 12 C -0.118 4.118 13 C 0.021 3.979 14 H 0.160 0.840 15 N -0.013 5.013 16 O -0.188 6.188 17 O -0.182 6.182 18 C -0.123 4.123 19 C -0.110 4.110 20 S 0.043 5.957 21 H 0.405 0.595 22 H 0.107 0.893 23 H -0.273 1.273 24 H -0.289 1.289 25 H 0.190 0.810 26 H 0.418 0.582 27 H 0.106 0.894 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.095 0.905 33 H 0.101 0.899 34 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.286 -2.763 6.027 6.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.373 6.373 2 C -0.134 4.134 3 Si 0.656 3.344 4 C -0.395 4.395 5 C -0.039 4.039 6 N -0.288 5.288 7 C -0.040 4.040 8 N -0.323 5.323 9 C 0.049 3.951 10 H 0.117 0.883 11 C -0.157 4.157 12 C -0.156 4.156 13 C -0.076 4.076 14 H 0.177 0.823 15 N 0.506 4.494 16 O -0.405 6.405 17 O -0.402 6.402 18 C -0.162 4.162 19 C -0.149 4.149 20 S 0.291 5.709 21 H 0.257 0.743 22 H 0.125 0.875 23 H -0.200 1.200 24 H -0.216 1.216 25 H 0.207 0.793 26 H 0.258 0.742 27 H 0.124 0.876 28 H 0.089 0.911 29 H 0.094 0.906 30 H 0.096 0.904 31 H 0.101 0.899 32 H 0.113 0.887 33 H 0.119 0.881 34 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 2.232 -2.771 5.123 6.237 hybrid contribution -0.431 -0.213 -0.350 0.594 sum 1.801 -2.984 4.773 5.910 Atomic orbital electron populations 1.86457 1.17014 1.82305 1.51557 1.23792 0.85717 1.09355 0.94543 0.94231 0.78612 0.76039 0.85508 1.24634 1.12852 0.97932 1.04082 1.21589 0.97039 0.93426 0.91834 1.66482 1.17899 1.33512 1.10903 1.23929 0.94882 0.92670 0.92536 1.44382 1.54006 1.15437 1.18487 1.21193 0.94861 0.84023 0.95005 0.88276 1.21904 0.98994 0.99075 0.95729 1.21823 0.94463 1.02388 0.96928 1.24656 1.01990 0.91666 0.89261 0.82282 1.45484 0.96423 1.03809 1.03671 1.94580 1.53298 1.87838 1.04816 1.94546 1.52741 1.05247 1.87647 1.21954 0.93690 1.02649 0.97877 1.21840 0.98246 0.99638 0.95154 1.84279 1.52477 1.15468 1.18630 0.74310 0.87512 1.19961 1.21586 0.79316 0.74219 0.87558 0.91130 0.90574 0.90421 0.89898 0.88654 0.88077 0.86626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.51 12.85 -148.98 -1.91 -1.40 16 2 C -0.02 0.02 2.98 71.24 0.21 0.23 16 3 Si 0.75 -0.98 31.05 68.60 2.13 1.15 16 4 C -0.27 -1.33 5.78 24.58 0.14 -1.19 16 5 C 0.11 0.58 11.22 83.54 0.94 1.52 16 6 N -0.56 -3.34 9.90 -202.03 -2.00 -5.34 16 7 C 0.33 1.19 8.06 179.32 1.45 2.64 16 8 N -0.68 1.70 4.39 -330.40 -1.45 0.25 16 9 C 0.16 -0.98 2.92 44.99 0.13 -0.85 16 10 H 0.10 -0.41 7.76 -2.39 -0.02 -0.43 16 11 C -0.12 0.68 5.62 30.59 0.17 0.85 16 12 C -0.12 0.42 5.15 30.59 0.16 0.58 16 13 C 0.02 -0.09 2.88 44.99 0.13 0.04 16 14 H 0.16 -1.35 8.09 -2.39 -0.02 -1.37 16 15 N -0.01 -0.06 3.82 -169.38 -0.65 -0.71 16 16 O -0.19 -1.73 19.21 18.88 0.36 -1.36 16 17 O -0.18 -1.61 18.50 18.89 0.35 -1.26 16 18 C -0.12 0.98 5.13 30.60 0.16 1.14 16 19 C -0.11 1.23 5.61 30.59 0.17 1.40 16 20 S 0.04 0.23 20.57 -56.49 -1.16 -0.94 16 21 H 0.41 -4.73 8.74 -74.06 -0.65 -5.38 16 22 H 0.11 -0.62 7.96 -2.39 -0.02 -0.64 16 23 H -0.27 -1.02 7.11 99.48 0.71 -0.32 16 24 H -0.29 -2.01 7.11 99.48 0.71 -1.30 16 25 H 0.19 0.33 8.06 -2.91 -0.02 0.30 16 26 H 0.42 -1.98 6.99 -92.71 -0.65 -2.63 16 27 H 0.11 -1.05 8.14 -2.39 -0.02 -1.07 16 28 H 0.07 -0.06 8.14 -2.38 -0.02 -0.08 16 29 H 0.08 -0.03 7.49 -2.39 -0.02 -0.05 16 30 H 0.08 -0.17 8.14 -2.39 -0.02 -0.19 16 31 H 0.08 -0.55 6.39 -2.39 -0.02 -0.56 16 32 H 0.09 -0.80 8.14 -2.39 -0.02 -0.81 16 33 H 0.10 -1.19 8.14 -2.39 -0.02 -1.21 16 34 H 0.12 -1.69 8.14 -2.39 -0.02 -1.71 16 Total: 0.00 -19.91 300.16 -0.79 -20.70 By element: Atomic # 1 Polarization: -17.33 SS G_CDS: -0.11 Total: -17.44 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: 3.66 Total: 6.36 kcal Atomic # 7 Polarization: -1.71 SS G_CDS: -4.10 Total: -5.80 kcal Atomic # 8 Polarization: -2.83 SS G_CDS: -1.20 Total: -4.03 kcal Atomic # 14 Polarization: -0.98 SS G_CDS: 2.13 Total: 1.15 kcal Atomic # 16 Polarization: 0.23 SS G_CDS: -1.16 Total: -0.94 kcal Total: -19.91 -0.79 -20.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16623256_15704118.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.397 kcal (2) G-P(sol) polarization free energy of solvation -19.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds