Wall clock time and date at job start Mon Mar 8 2021 09:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86295 * 109.47084 * 2 1 4 4 C 1.50698 * 109.47021 * 239.99781 * 2 1 3 5 5 C 1.37985 * 120.32526 * 120.00142 * 4 2 1 6 6 N 1.32004 * 120.90338 * 180.02562 * 5 4 2 7 7 C 1.32339 * 121.64689 * 0.02562 * 6 5 4 8 8 N 1.39143 * 119.71975 * 179.97438 * 7 6 5 9 9 C 1.46492 * 120.00234 * 0.02562 * 8 7 6 10 10 H 1.09005 * 109.47048 * 35.00356 * 9 8 7 11 11 C 1.52997 * 109.47580 * 154.99892 * 9 8 7 12 12 C 1.53003 * 109.46816 * 60.00051 * 11 9 8 13 13 C 1.53002 * 109.46928 * 60.00001 * 12 11 9 14 14 H 1.08997 * 109.46879 * 60.00452 * 13 12 11 15 15 N 1.46506 * 109.47134 * 179.97438 * 13 12 11 16 16 O 1.21796 * 119.99914 * 60.00064 * 15 13 12 17 17 O 1.21797 * 119.99849 * 240.00323 * 15 13 12 18 18 C 1.53001 * 109.47488 * 300.00177 * 13 12 11 19 19 C 1.52996 * 109.47511 * 275.00436 * 9 8 7 20 20 C 1.39343 * 120.56201 * 359.97438 * 7 6 5 21 21 F 1.35099 * 120.47259 * 179.97438 * 20 7 6 22 22 C 1.38450 * 119.05684 * 0.02562 * 20 7 6 23 23 H 0.96701 * 113.99824 * 60.00012 * 1 2 3 24 24 H 1.09000 * 109.47285 * 119.99736 * 2 1 3 25 25 H 1.48501 * 110.00235 * 298.67963 * 3 2 1 26 26 H 1.48501 * 110.00165 * 59.99932 * 3 2 1 27 27 H 1.08004 * 119.54739 * 359.74250 * 5 4 2 28 28 H 0.96998 * 119.99530 * 180.02562 * 8 7 6 29 29 H 1.08997 * 109.47767 * 180.02562 * 11 9 8 30 30 H 1.08997 * 109.47235 * 300.00986 * 11 9 8 31 31 H 1.08999 * 109.47736 * 180.02562 * 12 11 9 32 32 H 1.08998 * 109.47398 * 300.00186 * 12 11 9 33 33 H 1.08993 * 109.47183 * 180.02562 * 18 13 12 34 34 H 1.08998 * 109.46808 * 299.99796 * 18 13 12 35 35 H 1.09006 * 109.46879 * 59.99409 * 19 9 8 36 36 H 1.08998 * 109.47408 * 179.97438 * 19 9 8 37 37 H 1.08001 * 120.75911 * 179.97438 * 22 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2304 5 6 2.7250 -0.0464 -2.1431 6 7 3.1709 -0.6574 -3.2250 7 6 2.8775 -1.9227 -3.4785 8 7 3.3686 -2.5271 -4.6315 9 6 4.2072 -1.7633 -5.5586 10 1 4.8315 -1.0691 -4.9961 11 6 5.0976 -2.7232 -6.3501 12 6 4.2214 -3.6977 -7.1397 13 6 3.3305 -2.9144 -8.1060 14 1 3.9544 -2.3461 -8.7958 15 7 2.4918 -3.8476 -8.8625 16 8 1.7163 -4.5816 -8.2767 17 8 2.5702 -3.8892 -10.0772 18 6 2.4401 -1.9544 -7.3145 19 6 3.3164 -0.9800 -6.5249 20 6 2.0809 -2.6550 -2.6004 21 9 1.7820 -3.9464 -2.8613 22 6 1.5990 -2.0399 -1.4575 23 1 -0.3933 0.4417 -0.7651 24 1 1.7924 -0.5138 0.8900 25 1 1.5879 2.4585 -1.2242 26 1 1.5615 2.4679 1.2085 27 1 2.9813 0.9888 -1.9723 28 1 3.1558 -3.4542 -4.8214 29 1 5.7219 -2.1549 -7.0396 30 1 5.7322 -3.2813 -5.6617 31 1 4.8556 -4.3820 -7.7033 32 1 3.5974 -4.2661 -6.4500 33 1 1.8052 -1.3967 -8.0028 34 1 1.8162 -2.5227 -6.6248 35 1 2.6821 -0.2960 -5.9609 36 1 3.9404 -0.4113 -7.2144 37 1 0.9789 -2.5813 -0.7584 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_16623256_17656566.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:19:05 Heat of formation + Delta-G solvation = -36.776184 kcal Electronic energy + Delta-G solvation = -24727.402928 eV Core-core repulsion = 20810.165392 eV Total energy + Delta-G solvation = -3917.237536 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 298.116 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.97408 -43.45050 -41.53664 -40.10573 -38.05866 -37.59000 -35.89193 -33.32733 -32.64266 -32.27473 -30.63341 -27.39782 -26.42294 -24.96115 -24.17621 -23.28428 -23.02378 -20.92467 -19.87179 -19.55165 -19.37119 -18.51386 -18.33530 -18.19584 -17.59691 -17.10441 -16.67651 -16.20277 -16.08988 -15.95577 -15.53483 -15.28460 -14.69963 -14.62141 -14.31777 -14.13710 -13.93437 -13.68822 -13.60844 -13.33252 -12.76107 -12.70914 -12.64915 -12.50820 -12.26127 -12.22891 -12.06816 -11.94989 -11.58019 -11.26737 -10.78421 -10.66894 -10.54355 -8.80080 -4.89697 -0.70957 -0.09448 0.09084 0.64255 1.31298 1.62635 1.93690 2.00481 2.52718 2.93026 2.99501 3.01564 3.26602 3.42388 3.44704 3.58820 3.60192 3.73722 3.84792 3.91376 3.94387 3.99057 4.10417 4.29072 4.37420 4.45264 4.54451 4.62382 4.72513 4.79016 4.85099 4.87856 4.97091 4.98498 5.09344 5.17717 5.37410 5.95554 6.12417 6.32269 6.48852 6.90715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.550 6.550 2 C -0.070 4.070 3 Si 0.769 3.231 4 C -0.203 4.203 5 C 0.149 3.851 6 N -0.517 5.517 7 C 0.386 3.614 8 N -0.712 5.712 9 C 0.153 3.847 10 H 0.109 0.891 11 C -0.113 4.113 12 C -0.124 4.124 13 C 0.021 3.979 14 H 0.159 0.841 15 N -0.013 5.013 16 O -0.186 6.186 17 O -0.187 6.187 18 C -0.118 4.118 19 C -0.117 4.117 20 C -0.041 4.041 21 F -0.144 7.144 22 C -0.042 4.042 23 H 0.386 0.614 24 H 0.128 0.872 25 H -0.275 1.275 26 H -0.303 1.303 27 H 0.185 0.815 28 H 0.411 0.589 29 H 0.114 0.886 30 H 0.097 0.903 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.105 0.895 37 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.702 4.655 1.941 8.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.358 6.358 2 C -0.180 4.180 3 Si 0.674 3.326 4 C -0.208 4.208 5 C -0.008 4.008 6 N -0.235 5.235 7 C 0.147 3.853 8 N -0.346 5.346 9 C 0.048 3.952 10 H 0.126 0.874 11 C -0.151 4.151 12 C -0.162 4.162 13 C -0.076 4.076 14 H 0.177 0.823 15 N 0.506 4.494 16 O -0.405 6.405 17 O -0.405 6.405 18 C -0.156 4.156 19 C -0.156 4.156 20 C -0.068 4.068 21 F -0.123 7.123 22 C -0.069 4.069 23 H 0.236 0.764 24 H 0.145 0.855 25 H -0.202 1.202 26 H -0.232 1.232 27 H 0.202 0.798 28 H 0.249 0.751 29 H 0.132 0.868 30 H 0.116 0.884 31 H 0.109 0.891 32 H 0.098 0.902 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.123 0.877 37 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 7.670 6.161 2.124 10.065 hybrid contribution -2.456 -1.760 -0.242 3.031 sum 5.215 4.402 1.882 7.079 Atomic orbital electron populations 1.86591 1.18647 1.80353 1.50211 1.25084 0.83275 1.11812 0.97781 0.94204 0.90011 0.71505 0.76911 1.20900 1.04663 0.94622 1.00646 1.22711 0.90970 0.99960 0.87174 1.67363 1.26731 1.07118 1.22251 1.18526 0.90095 0.89273 0.87362 1.44844 1.54781 1.14749 1.20201 1.21111 0.91064 0.93515 0.89486 0.87360 1.21843 0.96968 0.96954 0.99300 1.21943 0.98000 0.98895 0.97359 1.24675 0.94011 0.91401 0.97483 0.82331 1.45531 1.00725 1.01425 1.01759 1.94552 1.34834 1.40025 1.71056 1.94570 1.73238 1.74690 0.98006 1.21843 0.97967 0.96832 0.99003 1.21921 0.98767 0.96867 0.98044 1.18222 1.07934 0.80876 0.99722 1.91472 1.92358 1.34350 1.94087 1.21422 0.96077 0.94850 0.94521 0.76447 0.85473 1.20156 1.23159 0.79848 0.75055 0.86788 0.88412 0.89096 0.90250 0.90535 0.90793 0.90478 0.87701 0.83240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.02 12.78 -148.98 -1.90 -1.89 16 2 C -0.07 0.28 2.84 71.24 0.20 0.48 16 3 Si 0.77 -4.39 29.82 68.60 2.05 -2.34 16 4 C -0.20 0.56 5.40 -19.77 -0.11 0.45 16 5 C 0.15 -0.54 9.84 84.61 0.83 0.29 16 6 N -0.52 0.63 9.20 -193.03 -1.78 -1.15 16 7 C 0.39 -0.03 7.47 133.08 0.99 0.97 16 8 N -0.71 2.77 4.38 -324.30 -1.42 1.35 16 9 C 0.15 -1.26 2.80 44.99 0.13 -1.14 16 10 H 0.11 -0.85 7.54 -2.38 -0.02 -0.86 16 11 C -0.11 1.30 5.61 30.59 0.17 1.47 16 12 C -0.12 0.92 5.13 30.60 0.16 1.07 16 13 C 0.02 -0.09 2.88 44.99 0.13 0.04 16 14 H 0.16 -1.38 8.09 -2.39 -0.02 -1.39 16 15 N -0.01 -0.07 3.82 -169.38 -0.65 -0.71 16 16 O -0.19 -1.77 18.51 18.89 0.35 -1.42 16 17 O -0.19 -1.74 19.21 18.89 0.36 -1.38 16 18 C -0.12 0.53 5.15 30.59 0.16 0.69 16 19 C -0.12 0.94 5.62 30.59 0.17 1.11 16 20 C -0.04 -0.09 7.35 22.59 0.17 0.08 16 21 F -0.14 -0.69 16.65 44.97 0.75 0.06 16 22 C -0.04 -0.01 9.75 22.48 0.22 0.21 16 23 H 0.39 -2.11 8.70 -74.06 -0.64 -2.75 16 24 H 0.13 -0.69 7.96 -2.39 -0.02 -0.71 16 25 H -0.28 0.69 7.11 99.48 0.71 1.40 16 26 H -0.30 -0.87 7.11 99.48 0.71 -0.16 16 27 H 0.19 -1.60 4.88 -2.91 -0.01 -1.62 16 28 H 0.41 -1.51 6.34 -92.71 -0.59 -2.09 16 29 H 0.11 -1.74 8.14 -2.39 -0.02 -1.75 16 30 H 0.10 -1.15 8.14 -2.39 -0.02 -1.17 16 31 H 0.09 -0.68 8.14 -2.39 -0.02 -0.70 16 32 H 0.08 -0.41 6.39 -2.39 -0.02 -0.42 16 33 H 0.08 -0.25 8.14 -2.39 -0.02 -0.27 16 34 H 0.07 -0.05 7.49 -2.39 -0.02 -0.07 16 35 H 0.08 -0.37 8.14 -2.38 -0.02 -0.39 16 36 H 0.10 -1.26 8.14 -2.39 -0.02 -1.28 16 37 H 0.15 -0.07 8.06 -2.91 -0.02 -0.09 16 Total: 0.00 -17.02 312.69 0.92 -16.11 By element: Atomic # 1 Polarization: -14.28 SS G_CDS: -0.06 Total: -14.34 kcal Atomic # 6 Polarization: 2.50 SS G_CDS: 3.22 Total: 5.72 kcal Atomic # 7 Polarization: 3.33 SS G_CDS: -3.84 Total: -0.51 kcal Atomic # 8 Polarization: -3.50 SS G_CDS: -1.19 Total: -4.69 kcal Atomic # 9 Polarization: -0.69 SS G_CDS: 0.75 Total: 0.06 kcal Atomic # 14 Polarization: -4.39 SS G_CDS: 2.05 Total: -2.34 kcal Total: -17.02 0.92 -16.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16623256_17656566.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.669 kcal (2) G-P(sol) polarization free energy of solvation -17.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds