Wall clock time and date at job start Mon Mar 8 2021 08:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34234 * 116.99919 * 2 1 4 4 O 1.20821 * 119.99564 * 0.02562 * 3 2 1 5 5 C 1.50690 * 120.00013 * 179.97438 * 3 2 1 6 6 H 1.09000 * 112.90879 * 48.75425 * 5 3 2 7 7 C 1.53786 * 113.61518 * 180.02562 * 5 3 2 8 8 C 1.53781 * 87.17350 * 140.02616 * 7 5 3 9 9 H 1.08998 * 113.61196 * 219.97759 * 8 7 5 10 10 N 1.46506 * 113.61613 * 89.15811 * 8 7 5 11 11 C 1.35309 * 125.86952 * 275.00364 * 10 8 7 12 12 C 1.35350 * 106.17686 * 179.97438 * 11 10 8 13 13 C 1.50694 * 126.75439 * 180.02562 * 12 11 10 14 14 N 1.46501 * 109.47034 * 95.00498 * 13 12 11 15 15 C 1.38406 * 120.00243 * 180.02562 * 14 13 12 16 16 N 1.32491 * 119.21480 * 359.72916 * 15 14 13 17 17 C 1.32279 * 120.73882 * 179.72324 * 16 15 14 18 18 C 1.38613 * 119.19567 * 0.54217 * 17 16 15 19 19 C 1.50699 * 120.71782 * 179.75200 * 18 17 16 20 20 O 1.42904 * 109.46785 * 119.97872 * 19 18 17 21 21 Si 1.86294 * 109.47369 * 359.97438 * 19 18 17 22 22 C 1.38599 * 118.55829 * 359.73240 * 18 17 16 23 23 N 1.32276 * 119.19731 * 359.97438 * 22 18 17 24 24 N 1.33777 * 106.49383 * 0.02562 * 12 11 10 25 25 N 1.28635 * 108.88446 * 359.73001 * 24 12 11 26 26 C 1.53781 * 87.08070 * 334.52830 * 8 7 5 27 27 H 1.09005 * 109.46883 * 60.00147 * 1 2 3 28 28 H 1.09002 * 109.46788 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47143 * 299.99863 * 1 2 3 30 30 H 1.09002 * 113.61357 * 25.43533 * 7 5 3 31 31 H 1.09002 * 113.61608 * 254.61695 * 7 5 3 32 32 H 1.08004 * 126.90927 * 359.97438 * 11 10 8 33 33 H 1.08997 * 109.47560 * 215.00536 * 13 12 11 34 34 H 1.09001 * 109.47387 * 335.01241 * 13 12 11 35 35 H 0.97008 * 120.00068 * 359.97438 * 14 13 12 36 36 H 1.08002 * 120.40246 * 180.29544 * 17 16 15 37 37 H 1.09000 * 109.47232 * 239.97718 * 19 18 17 38 38 H 0.96703 * 113.99960 * 299.99905 * 20 19 18 39 39 H 1.48507 * 110.00142 * 179.97438 * 21 19 18 40 40 H 1.48504 * 109.99868 * 301.31471 * 21 19 18 41 41 H 1.07997 * 120.40483 * 180.02562 * 22 18 17 42 42 H 1.09005 * 113.61471 * 139.98321 * 26 8 7 43 43 H 1.09003 * 113.61469 * 270.88099 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 4.0249 0.6360 -0.7540 7 6 4.1077 2.7143 0.0011 8 6 5.1823 2.2287 0.9882 9 1 5.3976 2.9411 1.7845 10 7 6.3923 1.7218 0.3359 11 6 6.5763 0.4632 -0.1254 12 6 7.8244 0.4319 -0.6483 13 6 8.5037 -0.7500 -1.2904 14 7 8.3185 -0.6902 -2.7424 15 6 8.8572 -1.6767 -3.5500 16 7 9.5422 -2.6651 -2.9940 17 6 10.0655 -3.6266 -3.7367 18 6 9.8994 -3.5847 -5.1122 19 6 10.4857 -4.6591 -5.9914 20 8 9.4372 -5.3088 -6.7130 21 14 11.3788 -5.9071 -4.9353 22 6 9.1820 -2.5336 -5.6612 23 7 8.6799 -1.6076 -4.8612 24 7 8.3363 1.6568 -0.4829 25 7 7.4609 2.3988 0.0984 26 6 4.1936 1.1250 1.3995 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 3.4171 3.4404 0.4300 31 1 4.5098 3.0300 -0.9616 32 1 5.8695 -0.3524 -0.0846 33 1 9.5685 -0.7272 -1.0587 34 1 8.0679 -1.6724 -0.9063 35 1 7.8176 0.0404 -3.1378 36 1 10.6188 -4.4323 -3.2772 37 1 11.1869 -4.2103 -6.6949 38 1 8.7749 -5.7314 -6.1491 39 1 11.9611 -6.9724 -5.7906 40 1 12.4512 -5.2381 -4.1558 41 1 9.0341 -2.4717 -6.7292 42 1 4.6650 0.1562 1.5653 43 1 3.5265 1.4165 2.2107 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_16723002_12175864.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:16:01 Heat of formation + Delta-G solvation = 88.886887 kcal Electronic energy + Delta-G solvation = -29167.471234 eV Core-core repulsion = 24833.105440 eV Total energy + Delta-G solvation = -4334.365793 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 347.143 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -44.59983 -42.06371 -42.00553 -40.01535 -38.28726 -37.57114 -37.05891 -34.68138 -34.34489 -33.20133 -31.79839 -29.81154 -28.31908 -27.66646 -27.29064 -26.15200 -25.55342 -24.47056 -23.15443 -22.59771 -22.33748 -20.90919 -19.56526 -19.20294 -18.72320 -18.27879 -18.06875 -17.97673 -17.68105 -17.26962 -16.64243 -16.45794 -16.18285 -15.98931 -15.76512 -15.72674 -15.41675 -15.36479 -14.68578 -14.54231 -14.44056 -14.18985 -14.08828 -13.99828 -13.85549 -13.52187 -13.15131 -13.13111 -12.75637 -12.50458 -12.24723 -12.18431 -12.02915 -11.96084 -11.83324 -11.74228 -11.61557 -11.37573 -11.20012 -10.60268 -10.47721 -9.98283 -9.09373 -5.10072 0.09733 0.19783 0.33372 0.90046 0.98383 1.14319 1.24222 1.46387 1.57376 1.93832 2.07965 2.45321 2.73882 2.86698 2.93080 3.05876 3.21951 3.32367 3.41758 3.54861 3.64861 3.68577 3.73380 3.79052 3.82422 3.83212 3.95993 4.02034 4.09557 4.10714 4.15767 4.24410 4.31500 4.42296 4.46749 4.50091 4.54496 4.57660 4.75777 4.78895 4.90917 5.17966 5.20973 5.38231 5.75652 6.00143 6.41052 6.50046 6.52513 7.31106 7.36156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.356 6.356 3 C 0.472 3.528 4 O -0.498 6.498 5 C -0.118 4.118 6 H 0.129 0.871 7 C -0.120 4.120 8 C 0.113 3.887 9 H 0.138 0.862 10 N -0.275 5.275 11 C -0.027 4.027 12 C -0.043 4.043 13 C 0.228 3.772 14 N -0.692 5.692 15 C 0.570 3.430 16 N -0.562 5.562 17 C 0.200 3.800 18 C -0.295 4.295 19 C -0.046 4.046 20 O -0.541 6.541 21 Si 0.682 3.318 22 C 0.224 3.776 23 N -0.568 5.568 24 N -0.248 5.248 25 N -0.070 5.070 26 C -0.120 4.120 27 H 0.065 0.935 28 H 0.105 0.895 29 H 0.065 0.935 30 H 0.127 0.873 31 H 0.092 0.908 32 H 0.194 0.806 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.416 0.584 36 H 0.167 0.833 37 H 0.116 0.884 38 H 0.379 0.621 39 H -0.251 1.251 40 H -0.255 1.255 41 H 0.170 0.830 42 H 0.100 0.900 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.995 -5.017 3.879 8.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.272 6.272 3 C 0.314 3.686 4 O -0.385 6.385 5 C -0.137 4.137 6 H 0.147 0.853 7 C -0.158 4.158 8 C 0.011 3.989 9 H 0.155 0.845 10 N -0.067 5.067 11 C -0.179 4.179 12 C -0.181 4.181 13 C 0.102 3.898 14 N -0.329 5.329 15 C 0.213 3.787 16 N -0.285 5.285 17 C 0.032 3.968 18 C -0.303 4.303 19 C -0.158 4.158 20 O -0.346 6.346 21 Si 0.584 3.416 22 C 0.056 3.944 23 N -0.290 5.290 24 N -0.115 5.115 25 N -0.049 5.049 26 C -0.158 4.158 27 H 0.084 0.916 28 H 0.124 0.876 29 H 0.084 0.916 30 H 0.145 0.855 31 H 0.111 0.889 32 H 0.211 0.789 33 H 0.107 0.893 34 H 0.108 0.892 35 H 0.254 0.746 36 H 0.183 0.817 37 H 0.133 0.867 38 H 0.226 0.774 39 H -0.176 1.176 40 H -0.180 1.180 41 H 0.187 0.813 42 H 0.118 0.882 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -3.809 -2.754 4.541 6.536 hybrid contribution -0.726 -0.718 -1.101 1.502 sum -4.535 -3.472 3.440 6.667 Atomic orbital electron populations 1.23368 0.75499 1.04238 1.02879 1.86505 1.24050 1.32988 1.83682 1.23257 0.91208 0.81665 0.72480 1.90713 1.66780 1.36396 1.44625 1.22763 0.88765 1.01085 1.01062 0.85303 1.23405 0.95837 0.95373 1.01171 1.22516 0.80665 0.98795 0.96929 0.84451 1.47138 1.12916 1.08072 1.38600 1.23438 1.00109 0.90263 1.04104 1.21860 0.93591 0.95872 1.06811 1.19309 1.00823 0.92237 0.77449 1.44092 1.58016 1.25626 1.05139 1.19286 0.87151 0.86754 0.85466 1.67913 1.15494 1.04613 1.40440 1.22783 0.90698 0.93709 0.89574 1.21709 1.09382 1.02777 0.96457 1.24702 0.94598 0.97076 0.99467 1.86510 1.38644 1.73086 1.36348 0.94989 0.83653 0.80637 0.82344 1.22825 0.86225 0.85557 0.99815 1.67976 1.27141 1.30264 1.03599 1.75194 1.21873 1.01628 1.12807 1.78456 0.90375 1.20332 1.15759 1.23406 0.96489 0.99854 0.96096 0.91603 0.87649 0.91578 0.85523 0.88891 0.78904 0.89279 0.89243 0.74647 0.81656 0.86703 0.77381 1.17593 1.17962 0.81257 0.88180 0.86101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.08 10.56 101.05 1.07 0.99 16 2 O -0.36 0.29 10.57 -39.27 -0.41 -0.12 16 3 C 0.47 -0.31 7.49 36.00 0.27 -0.04 16 4 O -0.50 -1.18 15.65 -18.75 -0.29 -1.48 16 5 C -0.12 0.43 3.86 -90.82 -0.35 0.08 16 6 H 0.13 -0.61 6.98 -51.93 -0.36 -0.97 16 7 C -0.12 0.39 7.19 -25.92 -0.19 0.20 16 8 C 0.11 -0.43 5.10 -67.11 -0.34 -0.77 16 9 H 0.14 -0.64 8.14 -51.93 -0.42 -1.06 16 10 N -0.28 0.28 3.52 -53.97 -0.19 0.09 16 11 C -0.03 0.06 9.62 -17.05 -0.16 -0.11 16 12 C -0.04 -0.01 6.61 -82.78 -0.55 -0.56 16 13 C 0.23 -0.10 6.21 -5.20 -0.03 -0.14 16 14 N -0.69 -0.54 5.70 -63.49 -0.36 -0.90 16 15 C 0.57 1.36 8.43 -322.81 -2.72 -1.36 16 16 N -0.56 -1.03 9.59 -13.93 -0.13 -1.16 16 17 C 0.20 -0.01 9.92 -17.22 -0.17 -0.18 16 18 C -0.29 0.09 5.40 -104.35 -0.56 -0.47 16 19 C -0.05 0.06 2.85 36.01 0.10 0.17 16 20 O -0.54 0.55 12.79 -35.23 -0.45 0.10 16 21 Si 0.68 -1.46 29.87 -169.99 -5.08 -6.54 16 22 C 0.22 0.22 10.92 -17.23 -0.19 0.03 16 23 N -0.57 -1.59 10.46 -13.93 -0.15 -1.74 16 24 N -0.25 -0.87 12.41 33.29 0.41 -0.46 16 25 N -0.07 -0.19 13.16 60.35 0.79 0.60 16 26 C -0.12 0.65 6.89 -25.78 -0.18 0.47 16 27 H 0.07 -0.12 8.13 -51.93 -0.42 -0.55 16 28 H 0.11 -0.47 8.14 -51.93 -0.42 -0.89 16 29 H 0.07 -0.15 8.13 -51.93 -0.42 -0.57 16 30 H 0.13 -0.39 7.43 -51.93 -0.39 -0.77 16 31 H 0.09 -0.21 8.14 -51.93 -0.42 -0.63 16 32 H 0.19 -1.10 6.75 -52.48 -0.35 -1.45 16 33 H 0.09 0.06 8.14 -51.93 -0.42 -0.36 16 34 H 0.09 -0.19 8.14 -51.93 -0.42 -0.61 16 35 H 0.42 0.26 8.58 -40.82 -0.35 -0.09 16 36 H 0.17 -0.43 5.04 -52.49 -0.26 -0.70 16 37 H 0.12 -0.12 7.96 -51.93 -0.41 -0.53 16 38 H 0.38 -1.78 8.70 45.56 0.40 -1.39 16 39 H -0.25 -0.32 7.11 56.52 0.40 0.08 16 40 H -0.25 -0.05 7.11 56.52 0.40 0.35 16 41 H 0.17 -0.11 8.06 -52.49 -0.42 -0.54 16 42 H 0.10 -0.65 6.99 -51.93 -0.36 -1.01 16 43 H 0.12 -0.74 8.10 -51.93 -0.42 -1.16 16 LS Contribution 370.55 15.07 5.58 5.58 Total: 0.00 -11.18 370.55 -9.38 -20.55 By element: Atomic # 1 Polarization: -7.75 SS G_CDS: -5.10 Total: -12.84 kcal Atomic # 6 Polarization: 2.32 SS G_CDS: -4.00 Total: -1.69 kcal Atomic # 7 Polarization: -3.94 SS G_CDS: 0.38 Total: -3.57 kcal Atomic # 8 Polarization: -0.34 SS G_CDS: -1.16 Total: -1.50 kcal Atomic # 14 Polarization: -1.46 SS G_CDS: -5.08 Total: -6.54 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -11.18 -9.38 -20.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16723002_12175864.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.442 kcal (2) G-P(sol) polarization free energy of solvation -11.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds