Wall clock time and date at job start Mon Mar 8 2021 08:16:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34234 * 116.99919 * 2 1 4 4 O 1.20821 * 119.99564 * 0.02562 * 3 2 1 5 5 C 1.50690 * 120.00013 * 179.97438 * 3 2 1 6 6 H 1.09000 * 112.90879 * 48.75425 * 5 3 2 7 7 C 1.53786 * 113.61518 * 180.02562 * 5 3 2 8 8 C 1.53781 * 87.17350 * 140.02616 * 7 5 3 9 9 H 1.08998 * 113.61196 * 219.97759 * 8 7 5 10 10 N 1.46506 * 113.61613 * 89.15811 * 8 7 5 11 11 C 1.35309 * 125.86952 * 275.00364 * 10 8 7 12 12 C 1.35350 * 106.17686 * 179.97438 * 11 10 8 13 13 C 1.50694 * 126.75439 * 180.02562 * 12 11 10 14 14 N 1.46501 * 109.47034 * 95.00498 * 13 12 11 15 15 C 1.38406 * 120.00243 * 180.02562 * 14 13 12 16 16 N 1.32491 * 119.21480 * 359.72916 * 15 14 13 17 17 C 1.32279 * 120.73882 * 179.72324 * 16 15 14 18 18 C 1.38613 * 119.19567 * 0.54217 * 17 16 15 19 19 C 1.50699 * 120.71782 * 179.75200 * 18 17 16 20 20 O 1.42904 * 109.46785 * 119.97872 * 19 18 17 21 21 Si 1.86294 * 109.47369 * 359.97438 * 19 18 17 22 22 C 1.38599 * 118.55829 * 359.73240 * 18 17 16 23 23 N 1.32276 * 119.19731 * 359.97438 * 22 18 17 24 24 N 1.33777 * 106.49383 * 0.02562 * 12 11 10 25 25 N 1.28635 * 108.88446 * 359.73001 * 24 12 11 26 26 C 1.53781 * 87.08070 * 334.52830 * 8 7 5 27 27 H 1.09005 * 109.46883 * 60.00147 * 1 2 3 28 28 H 1.09002 * 109.46788 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47143 * 299.99863 * 1 2 3 30 30 H 1.09002 * 113.61357 * 25.43533 * 7 5 3 31 31 H 1.09002 * 113.61608 * 254.61695 * 7 5 3 32 32 H 1.08004 * 126.90927 * 359.97438 * 11 10 8 33 33 H 1.08997 * 109.47560 * 215.00536 * 13 12 11 34 34 H 1.09001 * 109.47387 * 335.01241 * 13 12 11 35 35 H 0.97008 * 120.00068 * 359.97438 * 14 13 12 36 36 H 1.08002 * 120.40246 * 180.29544 * 17 16 15 37 37 H 1.09000 * 109.47232 * 239.97718 * 19 18 17 38 38 H 0.96703 * 113.99960 * 299.99905 * 20 19 18 39 39 H 1.48507 * 110.00142 * 179.97438 * 21 19 18 40 40 H 1.48504 * 109.99868 * 301.31471 * 21 19 18 41 41 H 1.07997 * 120.40483 * 180.02562 * 22 18 17 42 42 H 1.09005 * 113.61471 * 139.98321 * 26 8 7 43 43 H 1.09003 * 113.61469 * 270.88099 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 4.0249 0.6360 -0.7540 7 6 4.1077 2.7143 0.0011 8 6 5.1823 2.2287 0.9882 9 1 5.3976 2.9411 1.7845 10 7 6.3923 1.7218 0.3359 11 6 6.5763 0.4632 -0.1254 12 6 7.8244 0.4319 -0.6483 13 6 8.5037 -0.7500 -1.2904 14 7 8.3185 -0.6902 -2.7424 15 6 8.8572 -1.6767 -3.5500 16 7 9.5422 -2.6651 -2.9940 17 6 10.0655 -3.6266 -3.7367 18 6 9.8994 -3.5847 -5.1122 19 6 10.4857 -4.6591 -5.9914 20 8 9.4372 -5.3088 -6.7130 21 14 11.3788 -5.9071 -4.9353 22 6 9.1820 -2.5336 -5.6612 23 7 8.6799 -1.6076 -4.8612 24 7 8.3363 1.6568 -0.4829 25 7 7.4609 2.3988 0.0984 26 6 4.1936 1.1250 1.3995 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 3.4171 3.4404 0.4300 31 1 4.5098 3.0300 -0.9616 32 1 5.8695 -0.3524 -0.0846 33 1 9.5685 -0.7272 -1.0587 34 1 8.0679 -1.6724 -0.9063 35 1 7.8176 0.0404 -3.1378 36 1 10.6188 -4.4323 -3.2772 37 1 11.1869 -4.2103 -6.6949 38 1 8.7749 -5.7314 -6.1491 39 1 11.9611 -6.9724 -5.7906 40 1 12.4512 -5.2381 -4.1558 41 1 9.0341 -2.4717 -6.7292 42 1 4.6650 0.1562 1.5653 43 1 3.5265 1.4165 2.2107 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_16723002_12175864.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:16:00 Heat of formation + Delta-G solvation = 86.722981 kcal Electronic energy + Delta-G solvation = -29167.565068 eV Core-core repulsion = 24833.105440 eV Total energy + Delta-G solvation = -4334.459627 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 347.143 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -44.54088 -42.06237 -41.91960 -39.81900 -38.22726 -37.52864 -37.01878 -34.72973 -34.28795 -33.17198 -31.76925 -29.64034 -28.23052 -27.45853 -27.02460 -26.11741 -25.56241 -24.37418 -23.15188 -22.54141 -22.21207 -20.73181 -19.53771 -19.07873 -18.72916 -18.14928 -17.97021 -17.79398 -17.58255 -17.20540 -16.63192 -16.37036 -16.12326 -15.87721 -15.71063 -15.56934 -15.37000 -15.18917 -14.59478 -14.52122 -14.34596 -14.05885 -13.97789 -13.84342 -13.65362 -13.38291 -13.11337 -12.96030 -12.71650 -12.25604 -12.19865 -12.04658 -11.89501 -11.88627 -11.86038 -11.75272 -11.53905 -11.36169 -11.11368 -10.54913 -10.42381 -10.01375 -9.10513 -4.95589 0.07706 0.16379 0.44846 1.00140 1.10116 1.19089 1.36364 1.65179 1.68324 2.03236 2.08233 2.74489 2.82329 3.03322 3.09712 3.21916 3.31489 3.57855 3.61045 3.69138 3.69992 3.74582 3.84267 3.93049 3.99156 4.14054 4.18735 4.25957 4.29093 4.29377 4.45397 4.47469 4.57283 4.59383 4.62398 4.69900 4.70791 4.77707 4.85782 4.89671 4.98430 5.22922 5.30653 5.54786 5.73386 5.98882 6.36884 6.59743 6.83340 7.26143 7.37211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.359 6.359 3 C 0.472 3.528 4 O -0.536 6.536 5 C -0.115 4.115 6 H 0.144 0.856 7 C -0.121 4.121 8 C 0.109 3.891 9 H 0.146 0.854 10 N -0.268 5.268 11 C -0.006 4.006 12 C -0.055 4.055 13 C 0.235 3.765 14 N -0.690 5.690 15 C 0.556 3.444 16 N -0.573 5.573 17 C 0.196 3.804 18 C -0.287 4.287 19 C -0.048 4.048 20 O -0.554 6.554 21 Si 0.773 3.227 22 C 0.213 3.787 23 N -0.592 5.592 24 N -0.290 5.290 25 N -0.109 5.109 26 C -0.103 4.103 27 H 0.058 0.942 28 H 0.129 0.871 29 H 0.064 0.936 30 H 0.123 0.877 31 H 0.079 0.921 32 H 0.234 0.766 33 H 0.073 0.927 34 H 0.111 0.889 35 H 0.414 0.586 36 H 0.190 0.810 37 H 0.111 0.889 38 H 0.395 0.605 39 H -0.298 1.298 40 H -0.283 1.283 41 H 0.180 0.820 42 H 0.121 0.879 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.708 -6.810 4.693 10.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.275 6.275 3 C 0.316 3.684 4 O -0.425 6.425 5 C -0.133 4.133 6 H 0.162 0.838 7 C -0.159 4.159 8 C 0.008 3.992 9 H 0.164 0.836 10 N -0.060 5.060 11 C -0.159 4.159 12 C -0.194 4.194 13 C 0.110 3.890 14 N -0.327 5.327 15 C 0.199 3.801 16 N -0.296 5.296 17 C 0.029 3.971 18 C -0.295 4.295 19 C -0.160 4.160 20 O -0.362 6.362 21 Si 0.679 3.321 22 C 0.045 3.955 23 N -0.315 5.315 24 N -0.156 5.156 25 N -0.087 5.087 26 C -0.141 4.141 27 H 0.076 0.924 28 H 0.147 0.853 29 H 0.082 0.918 30 H 0.141 0.859 31 H 0.098 0.902 32 H 0.251 0.749 33 H 0.091 0.909 34 H 0.129 0.871 35 H 0.251 0.749 36 H 0.206 0.794 37 H 0.129 0.871 38 H 0.245 0.755 39 H -0.226 1.226 40 H -0.210 1.210 41 H 0.197 0.803 42 H 0.140 0.860 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -4.546 -4.532 5.367 8.368 hybrid contribution -0.538 -0.203 -1.416 1.528 sum -5.085 -4.735 3.951 7.993 Atomic orbital electron populations 1.23537 0.74957 1.05666 1.02453 1.86509 1.24729 1.32856 1.83377 1.23813 0.92214 0.81145 0.71182 1.90700 1.67805 1.37519 1.46497 1.22878 0.86764 1.00866 1.02827 0.83826 1.23361 0.95994 0.95874 1.00678 1.22717 0.79797 0.99958 0.96736 0.83631 1.47338 1.12656 1.08248 1.37752 1.23986 0.99669 0.90496 1.01725 1.22037 0.94634 0.95177 1.07520 1.19305 1.00042 0.92878 0.76807 1.44156 1.57727 1.25256 1.05517 1.19488 0.87637 0.87318 0.85610 1.67960 1.15859 1.04960 1.40815 1.23204 0.90313 0.93805 0.89755 1.21770 1.08691 1.02499 0.96526 1.24817 0.94630 0.97103 0.99428 1.86479 1.39185 1.73221 1.37332 0.93939 0.81428 0.76982 0.79761 1.23099 0.86374 0.85708 1.00289 1.67975 1.28200 1.31228 1.04073 1.75130 1.23244 1.03209 1.14029 1.78387 0.91643 1.21280 1.17424 1.23431 0.95404 1.00192 0.95107 0.92355 0.85325 0.91755 0.85919 0.90224 0.74931 0.90925 0.87120 0.74864 0.79350 0.87116 0.75477 1.22564 1.20992 0.80284 0.86041 0.85018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.13 10.56 113.37 1.20 1.07 16 2 O -0.36 0.89 10.57 -51.45 -0.54 0.35 16 3 C 0.47 -0.80 7.49 71.23 0.53 -0.26 16 4 O -0.54 -2.90 15.65 21.98 0.34 -2.56 16 5 C -0.11 0.97 3.86 -10.92 -0.04 0.93 16 6 H 0.14 -1.64 6.98 -2.39 -0.02 -1.66 16 7 C -0.12 0.77 7.19 31.12 0.22 1.00 16 8 C 0.11 -0.91 5.10 45.52 0.23 -0.67 16 9 H 0.15 -1.43 8.14 -2.39 -0.02 -1.45 16 10 N -0.27 0.67 3.52 -324.66 -1.14 -0.47 16 11 C -0.01 0.04 9.62 83.49 0.80 0.84 16 12 C -0.05 -0.03 6.61 41.59 0.28 0.25 16 13 C 0.23 -0.21 6.21 85.63 0.53 0.33 16 14 N -0.69 -1.40 5.70 -354.79 -2.02 -3.43 16 15 C 0.56 2.84 8.43 261.49 2.20 5.04 16 16 N -0.57 -1.97 9.59 -197.98 -1.90 -3.87 16 17 C 0.20 -0.15 9.92 84.71 0.84 0.69 16 18 C -0.29 0.29 5.40 -19.69 -0.11 0.19 16 19 C -0.05 0.16 2.85 71.24 0.20 0.36 16 20 O -0.55 1.57 12.79 -148.98 -1.91 -0.34 16 21 Si 0.77 -3.80 29.87 68.60 2.05 -1.75 16 22 C 0.21 0.46 10.92 84.71 0.93 1.39 16 23 N -0.59 -3.66 10.46 -197.99 -2.07 -5.73 16 24 N -0.29 -2.40 12.41 -48.60 -0.60 -3.00 16 25 N -0.11 -0.70 13.16 37.02 0.49 -0.22 16 26 C -0.10 1.33 6.89 31.21 0.22 1.55 16 27 H 0.06 -0.19 8.13 -2.38 -0.02 -0.21 16 28 H 0.13 -1.29 8.14 -2.39 -0.02 -1.31 16 29 H 0.06 -0.29 8.13 -2.39 -0.02 -0.31 16 30 H 0.12 -0.66 7.43 -2.39 -0.02 -0.67 16 31 H 0.08 -0.28 8.14 -2.39 -0.02 -0.30 16 32 H 0.23 -3.47 6.75 -2.91 -0.02 -3.49 16 33 H 0.07 0.18 8.14 -2.39 -0.02 0.16 16 34 H 0.11 -0.60 8.14 -2.39 -0.02 -0.62 16 35 H 0.41 0.91 8.58 -92.70 -0.80 0.11 16 36 H 0.19 -1.24 5.04 -2.91 -0.01 -1.26 16 37 H 0.11 -0.26 7.96 -2.39 -0.02 -0.28 16 38 H 0.40 -4.21 8.70 -74.05 -0.64 -4.85 16 39 H -0.30 -0.90 7.11 99.48 0.71 -0.19 16 40 H -0.28 0.03 7.11 99.48 0.71 0.74 16 41 H 0.18 -0.18 8.06 -2.91 -0.02 -0.21 16 42 H 0.12 -2.01 6.99 -2.38 -0.02 -2.03 16 43 H 0.13 -1.89 8.10 -2.39 -0.02 -1.91 16 Total: 0.00 -28.48 370.55 0.42 -28.06 By element: Atomic # 1 Polarization: -19.42 SS G_CDS: -0.31 Total: -19.73 kcal Atomic # 6 Polarization: 4.64 SS G_CDS: 8.03 Total: 12.68 kcal Atomic # 7 Polarization: -9.46 SS G_CDS: -7.25 Total: -16.71 kcal Atomic # 8 Polarization: -0.44 SS G_CDS: -2.10 Total: -2.55 kcal Atomic # 14 Polarization: -3.80 SS G_CDS: 2.05 Total: -1.75 kcal Total: -28.48 0.42 -28.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16723002_12175864.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.782 kcal (2) G-P(sol) polarization free energy of solvation -28.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds