Wall clock time and date at job start Mon Mar 8 2021 09:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42895 * 1 3 3 Si 1.86298 * 109.47343 * 2 1 4 4 C 1.50707 * 109.46919 * 119.99812 * 2 1 3 5 5 C 1.33324 * 125.95165 * 64.98550 * 4 2 1 6 6 N 1.32119 * 114.58201 * 180.02562 * 5 4 2 7 7 C 1.29693 * 116.86173 * 359.97438 * 6 5 4 8 8 N 1.38611 * 124.94769 * 180.26352 * 7 6 5 9 9 C 1.46500 * 119.99873 * 359.69758 * 8 7 6 10 10 H 1.08998 * 109.47534 * 34.99625 * 9 8 7 11 11 C 1.53002 * 109.46920 * 154.99911 * 9 8 7 12 12 C 1.53007 * 109.46927 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.47344 * 300.00204 * 12 11 9 14 14 H 1.08998 * 109.46662 * 300.00039 * 13 12 11 15 15 N 1.46500 * 109.47091 * 179.97438 * 13 12 11 16 16 C 1.46446 * 126.08450 * 299.99925 * 15 13 12 17 17 C 1.53203 * 113.70433 * 178.24527 * 16 15 13 18 18 C 1.55554 * 106.23711 * 27.55053 * 17 16 15 19 19 S 1.67287 * 126.08271 * 119.68891 * 15 13 12 20 20 O 1.42102 * 105.40548 * 274.99838 * 19 15 13 21 21 O 1.42106 * 105.40514 * 45.25513 * 19 15 13 22 22 C 1.53002 * 109.46773 * 59.99829 * 13 12 11 23 23 C 1.52997 * 109.47455 * 299.99811 * 22 13 12 24 24 S 1.70968 * 110.10264 * 359.97438 * 7 6 5 25 25 H 0.96700 * 113.99998 * 300.00285 * 1 2 3 26 26 H 1.09006 * 109.47420 * 239.99505 * 2 1 3 27 27 H 1.48499 * 110.00165 * 178.67996 * 3 2 1 28 28 H 1.48504 * 109.99808 * 299.99884 * 3 2 1 29 29 H 1.08002 * 122.71009 * 0.05368 * 5 4 2 30 30 H 0.97000 * 120.00159 * 179.69565 * 8 7 6 31 31 H 1.08992 * 109.47105 * 300.00052 * 11 9 8 32 32 H 1.09001 * 109.47204 * 60.00314 * 11 9 8 33 33 H 1.09001 * 109.46665 * 60.00299 * 12 11 9 34 34 H 1.08997 * 109.46817 * 180.02562 * 12 11 9 35 35 H 1.08997 * 108.64767 * 299.36038 * 16 15 13 36 36 H 1.09009 * 108.64457 * 57.31360 * 16 15 13 37 37 H 1.08998 * 110.09577 * 146.74577 * 17 16 15 38 38 H 1.08999 * 110.09882 * 268.29492 * 17 16 15 39 39 H 1.08998 * 111.37337 * 80.61658 * 18 17 16 40 40 H 1.09002 * 111.37016 * 205.35733 * 18 17 16 41 41 H 1.08998 * 109.47355 * 60.00634 * 22 13 12 42 42 H 1.09001 * 109.46647 * 180.02562 * 22 13 12 43 43 H 1.09004 * 109.47407 * 300.00272 * 23 22 13 44 44 H 1.09001 * 109.47430 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 1.2306 5 6 1.7619 -2.0025 1.5124 6 7 2.2970 -2.3901 2.6565 7 6 2.9107 -1.4845 3.3530 8 7 3.5344 -1.7068 4.5708 9 6 3.5247 -3.0457 5.1651 10 1 3.5839 -3.7944 4.3752 11 6 4.7251 -3.1966 6.1018 12 6 4.7146 -4.5949 6.7231 13 6 3.4210 -4.7909 7.5162 14 1 3.3620 -4.0420 8.3059 15 7 3.4107 -6.1299 8.1104 16 6 3.4754 -7.3980 7.3807 17 6 3.4882 -8.6315 8.2893 18 6 2.7428 -8.2204 9.5913 19 16 3.3304 -6.4823 9.7438 20 8 4.6719 -6.4238 10.2090 21 8 2.3153 -5.6344 10.2635 22 6 2.2207 -4.6400 6.5794 23 6 2.2311 -3.2418 5.9583 24 16 2.8454 0.0216 2.5466 25 1 -0.3933 0.4417 0.7650 26 1 1.7924 -0.5139 -0.8900 27 1 3.5346 1.7702 0.0321 28 1 1.5615 2.4678 -1.2085 29 1 1.2306 -2.6778 0.8581 30 1 3.9773 -0.9757 5.0294 31 1 5.6466 -3.0565 5.5369 32 1 4.6658 -2.4480 6.8919 33 1 4.7737 -5.3437 5.9332 34 1 5.5695 -4.7022 7.3907 35 1 2.6129 -7.4627 6.7173 36 1 4.3813 -7.4054 6.7744 37 1 2.9687 -9.4585 7.8053 38 1 4.5148 -8.9172 8.5185 39 1 1.6616 -8.2677 9.4618 40 1 3.0645 -8.8234 10.4404 41 1 2.2797 -5.3889 5.7897 42 1 1.2991 -4.7792 7.1445 43 1 2.1720 -2.4929 6.7480 44 1 1.3758 -3.1341 5.2912 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_16729366_15704118.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:09:55 Heat of formation + Delta-G solvation = -43.741375 kcal Electronic energy + Delta-G solvation = -28159.802738 eV Core-core repulsion = 24139.645020 eV Total energy + Delta-G solvation = -4020.157718 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 360.101 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.94981 -40.06569 -38.34963 -38.07390 -37.59220 -37.00010 -35.81175 -33.26263 -31.84818 -31.29639 -29.28925 -27.31702 -26.44314 -24.69978 -23.77668 -23.52775 -22.77542 -20.95092 -20.65688 -19.91471 -19.54850 -18.35224 -18.15375 -17.81433 -17.09324 -16.94009 -16.66972 -16.29280 -16.14092 -15.74468 -15.67527 -15.55283 -15.18213 -15.03312 -14.88451 -14.55575 -14.42365 -14.09902 -14.01414 -13.69101 -13.40269 -13.25565 -13.21424 -13.12740 -12.88691 -12.68906 -12.48894 -12.43907 -12.25895 -12.16736 -12.06308 -11.98463 -11.69253 -11.45734 -11.26126 -11.01023 -10.78692 -10.24842 -10.15532 -9.84052 -8.72029 -5.11746 -0.79527 -0.03438 0.04515 0.68748 1.27394 1.46270 1.58058 1.88907 1.99445 2.19387 2.59588 2.94125 3.29801 3.51991 3.57943 3.62615 3.67599 3.70054 3.92724 3.94454 3.97252 4.10581 4.16578 4.20416 4.36344 4.42266 4.47040 4.48884 4.51574 4.62482 4.68806 4.72144 4.74878 4.90801 4.95113 4.98678 5.05042 5.08475 5.14087 5.15489 5.20025 5.33291 5.43600 5.68703 5.87586 6.18312 6.72870 7.03180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.551 6.551 2 C -0.012 4.012 3 Si 0.730 3.270 4 C -0.310 4.310 5 C 0.105 3.895 6 N -0.574 5.574 7 C 0.319 3.681 8 N -0.683 5.683 9 C 0.165 3.835 10 H 0.079 0.921 11 C -0.121 4.121 12 C -0.121 4.121 13 C 0.183 3.817 14 H 0.079 0.921 15 N -0.983 5.983 16 C 0.069 3.931 17 C -0.124 4.124 18 C -0.558 4.558 19 S 2.543 3.457 20 O -0.996 6.996 21 O -1.004 7.004 22 C -0.117 4.117 23 C -0.122 4.122 24 S 0.110 5.890 25 H 0.394 0.606 26 H 0.119 0.881 27 H -0.271 1.271 28 H -0.272 1.272 29 H 0.177 0.823 30 H 0.424 0.576 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.138 0.862 38 H 0.100 0.900 39 H 0.161 0.839 40 H 0.160 0.840 41 H 0.078 0.922 42 H 0.066 0.934 43 H 0.068 0.932 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.035 -2.445 -0.172 2.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.359 6.359 2 C -0.126 4.126 3 Si 0.634 3.366 4 C -0.433 4.433 5 C -0.046 4.046 6 N -0.301 5.301 7 C -0.052 4.052 8 N -0.322 5.322 9 C 0.059 3.941 10 H 0.097 0.903 11 C -0.159 4.159 12 C -0.161 4.161 13 C 0.079 3.921 14 H 0.097 0.903 15 N -0.825 5.825 16 C -0.056 4.056 17 C -0.163 4.163 18 C -0.693 4.693 19 S 2.645 3.355 20 O -0.985 6.985 21 O -0.993 6.993 22 C -0.157 4.157 23 C -0.162 4.162 24 S 0.359 5.641 25 H 0.244 0.756 26 H 0.136 0.864 27 H -0.197 1.197 28 H -0.198 1.198 29 H 0.194 0.806 30 H 0.263 0.737 31 H 0.101 0.899 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.090 0.910 35 H 0.107 0.893 36 H 0.106 0.894 37 H 0.156 0.844 38 H 0.119 0.881 39 H 0.179 0.821 40 H 0.178 0.822 41 H 0.097 0.903 42 H 0.085 0.915 43 H 0.087 0.913 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.201 -1.127 0.154 1.654 hybrid contribution -0.414 -1.307 -0.823 1.599 sum 0.787 -2.434 -0.669 2.644 Atomic orbital electron populations 1.86477 1.17022 1.82099 1.50257 1.24197 0.84853 1.09192 0.94348 0.94108 0.79101 0.76005 0.87412 1.25668 1.15041 0.98259 1.04381 1.21441 0.97142 0.93711 0.92326 1.66484 1.19819 1.34492 1.09271 1.23943 0.95268 0.93547 0.92415 1.44223 1.58215 1.12742 1.17026 1.21011 0.94980 0.83096 0.95057 0.90264 1.21766 0.97615 0.97728 0.98841 1.21827 0.97126 0.97133 1.00039 1.20688 0.95581 0.80241 0.95612 0.90284 1.57026 1.90924 1.10165 1.24343 1.21784 1.05373 0.81283 0.97185 1.22570 1.03025 0.98689 0.92045 1.30613 1.12347 1.18401 1.07894 1.07017 0.74469 0.80078 0.73896 1.93603 1.37365 1.87315 1.80218 1.93550 1.60246 1.66484 1.79064 1.21770 0.97857 0.97182 0.98864 1.21854 0.97901 0.97105 0.99320 1.83809 1.55143 1.10557 1.14593 0.75560 0.86377 1.19654 1.19807 0.80601 0.73729 0.89882 0.90095 0.90087 0.90983 0.89275 0.89439 0.84368 0.88132 0.82062 0.82245 0.90343 0.91483 0.91319 0.92264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.20 12.88 -148.98 -1.92 -2.12 16 2 C -0.01 0.00 2.99 71.24 0.21 0.21 16 3 Si 0.73 -0.85 31.07 68.60 2.13 1.28 16 4 C -0.31 -0.42 5.73 24.58 0.14 -0.28 16 5 C 0.10 0.41 11.24 83.54 0.94 1.35 16 6 N -0.57 -3.12 9.90 -202.02 -2.00 -5.12 16 7 C 0.32 0.58 8.06 179.32 1.45 2.03 16 8 N -0.68 1.74 5.23 -330.39 -1.73 0.01 16 9 C 0.17 -0.45 2.59 44.99 0.12 -0.34 16 10 H 0.08 0.04 7.76 -2.39 -0.02 0.03 16 11 C -0.12 0.65 5.39 30.60 0.16 0.82 16 12 C -0.12 0.46 5.24 30.60 0.16 0.62 16 13 C 0.18 -0.24 2.86 44.99 0.13 -0.11 16 14 H 0.08 0.07 8.10 -2.39 -0.02 0.05 16 15 N -0.98 1.84 3.13 -493.14 -1.55 0.30 16 16 C 0.07 -0.56 6.19 86.46 0.53 -0.03 16 17 C -0.12 1.38 6.61 31.54 0.21 1.59 16 18 C -0.56 4.88 7.67 72.86 0.56 5.44 16 19 S 2.54 4.89 6.17 -56.49 -0.35 4.54 16 20 O -1.00 -9.62 18.14 -127.81 -2.32 -11.94 16 21 O -1.00 -10.19 18.04 -127.81 -2.31 -12.49 16 22 C -0.12 0.26 5.25 30.59 0.16 0.42 16 23 C -0.12 0.19 5.51 30.59 0.17 0.36 16 24 S 0.11 -0.07 20.59 -56.49 -1.16 -1.24 16 25 H 0.39 -2.77 8.70 -74.06 -0.64 -3.42 16 26 H 0.12 0.02 7.96 -2.38 -0.02 0.00 16 27 H -0.27 -0.96 7.11 99.48 0.71 -0.26 16 28 H -0.27 -1.30 7.11 99.48 0.71 -0.60 16 29 H 0.18 0.38 8.06 -2.91 -0.02 0.36 16 30 H 0.42 -2.95 8.73 -92.71 -0.81 -3.75 16 31 H 0.08 -0.51 8.14 -2.39 -0.02 -0.53 16 32 H 0.08 -0.54 8.14 -2.39 -0.02 -0.56 16 33 H 0.08 -0.41 7.59 -2.39 -0.02 -0.43 16 34 H 0.07 -0.14 8.14 -2.39 -0.02 -0.16 16 35 H 0.09 -0.93 7.73 -2.39 -0.02 -0.95 16 36 H 0.09 -0.80 7.60 -2.38 -0.02 -0.82 16 37 H 0.14 -2.16 8.14 -2.39 -0.02 -2.17 16 38 H 0.10 -1.14 8.14 -2.39 -0.02 -1.16 16 39 H 0.16 -1.90 8.14 -2.39 -0.02 -1.92 16 40 H 0.16 -1.89 8.14 -2.39 -0.02 -1.91 16 41 H 0.08 -0.27 7.68 -2.39 -0.02 -0.29 16 42 H 0.07 -0.02 8.14 -2.39 -0.02 -0.04 16 43 H 0.07 -0.12 8.14 -2.39 -0.02 -0.14 16 44 H 0.06 0.13 8.14 -2.39 -0.02 0.11 16 Total: 0.00 -26.62 375.99 -6.64 -33.26 By element: Atomic # 1 Polarization: -18.18 SS G_CDS: -0.39 Total: -18.57 kcal Atomic # 6 Polarization: 7.13 SS G_CDS: 4.94 Total: 12.07 kcal Atomic # 7 Polarization: 0.47 SS G_CDS: -5.27 Total: -4.81 kcal Atomic # 8 Polarization: -20.00 SS G_CDS: -6.54 Total: -26.55 kcal Atomic # 14 Polarization: -0.85 SS G_CDS: 2.13 Total: 1.28 kcal Atomic # 16 Polarization: 4.82 SS G_CDS: -1.51 Total: 3.30 kcal Total: -26.62 -6.64 -33.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16729366_15704118.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.481 kcal (2) G-P(sol) polarization free energy of solvation -26.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds