Wall clock time and date at job start Mon Mar 8 2021 09:51:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34232 * 116.99618 * 2 1 4 4 O 1.20826 * 120.00236 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00079 * 180.02562 * 3 2 1 6 6 H 1.08998 * 109.46862 * 300.00390 * 5 3 2 7 7 C 1.53006 * 109.47239 * 59.99547 * 5 3 2 8 8 C 1.52997 * 109.47164 * 180.02562 * 7 5 3 9 9 C 1.53002 * 109.46978 * 299.99874 * 8 7 5 10 10 F 1.39891 * 109.47254 * 300.00284 * 9 8 7 11 11 C 1.52997 * 109.46978 * 180.02562 * 9 8 7 12 12 N 1.46507 * 109.47321 * 65.00089 * 11 9 8 13 13 C 1.38610 * 120.00312 * 180.02562 * 12 11 9 14 14 N 1.29686 * 124.94629 * 0.02562 * 13 12 11 15 15 C 1.32115 * 116.86342 * 179.97438 * 14 13 12 16 16 C 1.33329 * 114.58444 * 359.97438 * 15 14 13 17 17 C 1.50698 * 125.95791 * 179.97438 * 16 15 14 18 18 O 1.42890 * 109.47449 * 300.00796 * 17 16 15 19 19 Si 1.86298 * 109.47245 * 180.02562 * 17 16 15 20 20 S 1.70965 * 124.94849 * 179.72317 * 13 12 11 21 21 C 1.52996 * 109.46891 * 60.00410 * 9 8 7 22 22 C 1.52997 * 109.47466 * 179.97438 * 5 3 2 23 23 H 1.08998 * 109.47213 * 299.99814 * 1 2 3 24 24 H 1.08996 * 109.46813 * 60.00493 * 1 2 3 25 25 H 1.09002 * 109.46831 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47002 * 60.00070 * 7 5 3 27 27 H 1.09000 * 109.47050 * 300.00336 * 7 5 3 28 28 H 1.09002 * 109.47045 * 180.02562 * 8 7 5 29 29 H 1.09001 * 109.47375 * 59.99966 * 8 7 5 30 30 H 1.08994 * 109.47445 * 185.00212 * 11 9 8 31 31 H 1.09000 * 109.47459 * 305.00519 * 11 9 8 32 32 H 0.97003 * 119.99307 * 0.02562 * 12 11 9 33 33 H 1.08002 * 122.71264 * 180.02562 * 15 14 13 34 34 H 1.09006 * 109.46601 * 60.00419 * 17 16 15 35 35 H 0.96698 * 114.00396 * 180.02562 * 18 17 16 36 36 H 1.48507 * 109.99581 * 60.00701 * 19 17 16 37 37 H 1.48499 * 110.00142 * 181.31920 * 19 17 16 38 38 H 1.09004 * 109.47368 * 179.97438 * 21 9 8 39 39 H 1.09001 * 109.47372 * 59.99964 * 21 9 8 40 40 H 1.09002 * 109.47153 * 59.99773 * 22 5 3 41 41 H 1.09001 * 109.46832 * 299.99964 * 22 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2750 -0.0006 6 1 3.9564 0.7807 0.8891 7 6 4.1130 0.5817 -1.2502 8 6 5.6409 0.6613 -1.2504 9 6 6.0750 2.1284 -1.2501 10 9 5.5748 2.7630 -2.3920 11 6 7.6029 2.2081 -1.2510 12 7 8.1203 1.6510 -2.5034 13 6 9.4867 1.6147 -2.7336 14 7 10.3906 2.0454 -1.9094 15 6 11.6500 1.9319 -2.2920 16 6 11.8170 1.3797 -3.4940 17 6 13.1367 1.1296 -4.1773 18 8 13.8225 2.3702 -4.3573 19 14 12.8364 0.3400 -5.8378 20 16 10.2262 0.9889 -4.1423 21 6 5.5285 2.8217 -0.0006 22 6 4.0001 2.7422 -0.0011 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 3.7228 1.0759 -2.1399 27 1 3.8039 -0.4636 -1.2502 28 1 6.0303 0.1677 -2.1409 29 1 6.0307 0.1668 -0.3607 30 1 7.9126 3.2492 -1.1612 31 1 7.9970 1.6380 -0.4097 32 1 7.5065 1.3077 -3.1715 33 1 12.4776 2.2593 -1.6801 34 1 13.7437 0.4647 -3.5628 35 1 14.6817 2.2851 -4.7927 36 1 12.0101 1.2373 -6.6848 37 1 14.1313 0.0592 -6.5082 38 1 5.8381 3.8668 0.0000 39 1 5.9183 2.3272 0.8892 40 1 3.6106 3.2366 0.8889 41 1 3.6100 3.2361 -0.8911 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_16738320_15704118.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:51:08 Heat of formation + Delta-G solvation = -116.446322 kcal Electronic energy + Delta-G solvation = -26080.119490 eV Core-core repulsion = 22002.930116 eV Total energy + Delta-G solvation = -4077.189373 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 331.109 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -48.82986 -41.73986 -40.72306 -39.04412 -38.06002 -37.56428 -36.67719 -33.02485 -32.05292 -31.28272 -29.08344 -27.63993 -26.29734 -24.55611 -24.01023 -23.53128 -21.75405 -20.81777 -20.53512 -19.79037 -18.68251 -18.59693 -17.91848 -17.67466 -17.54990 -16.94137 -16.83172 -16.46053 -16.08853 -15.80571 -15.47066 -15.25982 -15.02238 -14.84548 -14.64957 -14.42418 -14.17756 -14.06156 -13.95468 -13.62202 -13.27145 -13.09011 -13.02774 -12.89086 -12.77672 -12.46721 -12.37311 -12.14443 -11.91994 -11.86211 -11.67194 -11.37595 -11.26099 -11.08130 -10.73499 -10.31792 -10.19148 -8.75014 -5.04756 -0.10056 0.03224 0.65174 1.08651 1.24158 1.53460 1.69644 1.89808 1.95870 2.10122 3.18059 3.31014 3.43050 3.47253 3.52668 3.64623 3.69860 3.91473 3.92240 3.98341 4.17424 4.20917 4.27027 4.28452 4.38449 4.48881 4.49448 4.54692 4.67181 4.69705 4.72378 4.75009 4.91270 4.98857 5.00199 5.05664 5.08816 5.17025 5.30164 5.37851 5.73696 6.05197 6.59605 6.64269 6.96634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.360 6.360 3 C 0.461 3.539 4 O -0.543 6.543 5 C -0.077 4.077 6 H 0.141 0.859 7 C -0.108 4.108 8 C -0.132 4.132 9 C 0.110 3.890 10 F -0.217 7.217 11 C 0.121 3.879 12 N -0.685 5.685 13 C 0.315 3.685 14 N -0.573 5.573 15 C 0.102 3.898 16 C -0.270 4.270 17 C -0.024 4.024 18 O -0.556 6.556 19 Si 0.717 3.283 20 S 0.114 5.886 21 C -0.131 4.131 22 C -0.103 4.103 23 H 0.060 0.940 24 H 0.057 0.943 25 H 0.130 0.870 26 H 0.058 0.942 27 H 0.097 0.903 28 H 0.089 0.911 29 H 0.114 0.886 30 H 0.066 0.934 31 H 0.100 0.900 32 H 0.423 0.577 33 H 0.181 0.819 34 H 0.109 0.891 35 H 0.397 0.603 36 H -0.287 1.287 37 H -0.255 1.255 38 H 0.083 0.917 39 H 0.116 0.884 40 H 0.077 0.923 41 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.189 -7.544 1.691 7.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.276 6.276 3 C 0.306 3.694 4 O -0.433 6.433 5 C -0.095 4.095 6 H 0.159 0.841 7 C -0.146 4.146 8 C -0.170 4.170 9 C 0.092 3.908 10 F -0.198 7.198 11 C -0.005 4.005 12 N -0.326 5.326 13 C -0.055 4.055 14 N -0.300 5.300 15 C -0.048 4.048 16 C -0.393 4.393 17 C -0.137 4.137 18 O -0.367 6.367 19 Si 0.620 3.380 20 S 0.363 5.637 21 C -0.169 4.169 22 C -0.141 4.141 23 H 0.079 0.921 24 H 0.076 0.924 25 H 0.148 0.852 26 H 0.077 0.923 27 H 0.115 0.885 28 H 0.107 0.893 29 H 0.132 0.868 30 H 0.084 0.916 31 H 0.118 0.882 32 H 0.262 0.738 33 H 0.198 0.802 34 H 0.127 0.873 35 H 0.248 0.752 36 H -0.214 1.214 37 H -0.180 1.180 38 H 0.102 0.898 39 H 0.135 0.865 40 H 0.095 0.905 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.087 -7.121 0.829 7.169 hybrid contribution 0.840 1.561 0.042 1.773 sum 0.753 -5.560 0.870 5.678 Atomic orbital electron populations 1.23514 0.75197 1.05627 1.02275 1.86503 1.24592 1.32974 1.83552 1.24390 0.93092 0.81000 0.70929 1.90680 1.68219 1.37616 1.46756 1.21269 0.85147 0.99397 1.03708 0.84092 1.21487 0.95644 1.02092 0.95349 1.22171 0.95252 0.93318 1.06229 1.21393 0.91698 0.94193 0.83539 1.92855 1.89099 1.84261 1.53603 1.21966 0.91405 1.00207 0.86947 1.43882 0.99799 1.67157 1.21776 1.23834 0.90742 0.96683 0.94259 1.66472 1.00708 1.28706 1.34088 1.21454 0.92709 0.96535 0.94133 1.24619 0.97133 1.17342 1.00160 1.23913 0.90324 0.90158 1.09262 1.86565 1.37575 1.30298 1.82249 0.94529 0.83074 0.85627 0.74765 1.83854 0.98972 1.61735 1.19162 1.22086 0.94616 1.02733 0.97449 1.21364 0.95560 0.93809 1.03330 0.92130 0.92378 0.85158 0.92343 0.88456 0.89292 0.86753 0.91584 0.88179 0.73775 0.80195 0.87296 0.75156 1.21375 1.17985 0.89817 0.86545 0.90467 0.92676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.04 10.56 113.37 1.20 1.16 16 2 O -0.36 -0.61 10.47 -51.44 -0.54 -1.15 16 3 C 0.46 1.65 7.26 71.23 0.52 2.17 16 4 O -0.54 -5.98 15.73 21.97 0.35 -5.64 16 5 C -0.08 0.27 2.63 -11.54 -0.03 0.24 16 6 H 0.14 -1.27 8.14 -2.39 -0.02 -1.29 16 7 C -0.11 0.59 5.01 30.60 0.15 0.74 16 8 C -0.13 1.11 4.87 30.59 0.15 1.26 16 9 C 0.11 -0.53 0.84 -10.80 -0.01 -0.53 16 10 F -0.22 -0.40 15.41 44.97 0.69 0.29 16 11 C 0.12 -0.38 5.12 86.38 0.44 0.06 16 12 N -0.68 0.83 5.33 -351.01 -1.87 -1.05 16 13 C 0.32 1.10 8.09 179.32 1.45 2.55 16 14 N -0.57 -3.97 10.14 -202.03 -2.05 -6.02 16 15 C 0.10 0.57 11.22 83.54 0.94 1.50 16 16 C -0.27 -0.96 5.78 24.57 0.14 -0.81 16 17 C -0.02 0.01 2.98 71.24 0.21 0.22 16 18 O -0.56 -1.14 12.84 -148.98 -1.91 -3.06 16 19 Si 0.72 -0.88 31.05 68.60 2.13 1.25 16 20 S 0.11 0.20 20.57 -56.49 -1.16 -0.96 16 21 C -0.13 0.77 5.00 30.61 0.15 0.92 16 22 C -0.10 0.17 4.37 30.61 0.13 0.30 16 23 H 0.06 -0.04 8.13 -2.39 -0.02 -0.05 16 24 H 0.06 -0.01 8.13 -2.39 -0.02 -0.03 16 25 H 0.13 -0.94 8.14 -2.39 -0.02 -0.96 16 26 H 0.06 -0.08 7.80 -2.39 -0.02 -0.10 16 27 H 0.10 -0.70 8.11 -2.39 -0.02 -0.72 16 28 H 0.09 -0.82 7.18 -2.39 -0.02 -0.84 16 29 H 0.11 -1.41 8.14 -2.39 -0.02 -1.43 16 30 H 0.07 0.02 8.14 -2.39 -0.02 0.00 16 31 H 0.10 -0.52 8.14 -2.39 -0.02 -0.54 16 32 H 0.42 -1.76 7.58 -92.71 -0.70 -2.47 16 33 H 0.18 0.53 8.06 -2.91 -0.02 0.51 16 34 H 0.11 -0.59 7.96 -2.38 -0.02 -0.61 16 35 H 0.40 -2.61 8.74 -74.06 -0.65 -3.26 16 36 H -0.29 -1.92 7.11 99.48 0.71 -1.21 16 37 H -0.26 -0.26 7.11 99.48 0.71 0.45 16 38 H 0.08 -0.39 8.14 -2.39 -0.02 -0.41 16 39 H 0.12 -1.27 8.14 -2.39 -0.02 -1.29 16 40 H 0.08 -0.04 8.10 -2.39 -0.02 -0.06 16 41 H 0.05 0.21 7.76 -2.39 -0.02 0.19 16 Total: 0.00 -21.49 354.05 0.84 -20.65 By element: Atomic # 1 Polarization: -13.87 SS G_CDS: -0.25 Total: -14.11 kcal Atomic # 6 Polarization: 4.34 SS G_CDS: 5.45 Total: 9.79 kcal Atomic # 7 Polarization: -3.14 SS G_CDS: -3.92 Total: -7.06 kcal Atomic # 8 Polarization: -7.74 SS G_CDS: -2.11 Total: -9.84 kcal Atomic # 9 Polarization: -0.40 SS G_CDS: 0.69 Total: 0.29 kcal Atomic # 14 Polarization: -0.88 SS G_CDS: 2.13 Total: 1.25 kcal Atomic # 16 Polarization: 0.20 SS G_CDS: -1.16 Total: -0.96 kcal Total: -21.49 0.84 -20.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16738320_15704118.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.796 kcal (2) G-P(sol) polarization free energy of solvation -21.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds