Wall clock time and date at job start Mon Mar 8 2021 05:58:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33326 * 125.95315 * 2 1 4 4 C 1.50696 * 122.70910 * 0.02562 * 3 2 1 5 5 O 1.42905 * 109.47020 * 113.53920 * 4 3 2 6 6 Si 1.86294 * 109.47376 * 233.53603 * 4 3 2 7 7 N 1.32121 * 114.57597 * 180.27226 * 3 2 1 8 8 C 1.29685 * 116.87007 * 359.53382 * 7 3 2 9 9 N 1.38605 * 124.94952 * 180.21029 * 8 7 3 10 10 C 1.46507 * 119.99837 * 180.30097 * 9 8 7 11 11 H 1.09001 * 109.46739 * 34.99956 * 10 9 8 12 12 C 1.52997 * 109.46948 * 154.99602 * 10 9 8 13 13 C 1.53000 * 109.47047 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.47123 * 299.99746 * 13 12 10 15 15 H 1.09000 * 109.47112 * 300.00393 * 14 13 12 16 16 C 1.53000 * 109.47123 * 179.97438 * 14 13 12 17 17 F 1.39895 * 109.47267 * 65.00155 * 16 14 13 18 18 C 1.53010 * 109.46743 * 60.00136 * 14 13 12 19 19 C 1.52991 * 109.47011 * 274.99839 * 10 9 8 20 20 S 1.70961 * 110.09830 * 0.44730 * 8 7 3 21 21 H 1.08994 * 109.47739 * 84.87216 * 1 2 3 22 22 H 1.09007 * 109.47261 * 204.88100 * 1 2 3 23 23 H 1.09004 * 109.46752 * 324.87193 * 1 2 3 24 24 H 1.09005 * 109.47050 * 353.53960 * 4 3 2 25 25 H 0.96697 * 114.00151 * 59.99946 * 5 4 3 26 26 H 1.48492 * 110.00345 * 179.97438 * 6 4 3 27 27 H 1.48500 * 110.00299 * 301.32448 * 6 4 3 28 28 H 0.97000 * 119.99924 * 0.29623 * 9 8 7 29 29 H 1.09006 * 109.47132 * 300.00029 * 12 10 9 30 30 H 1.09000 * 109.47051 * 59.99800 * 12 10 9 31 31 H 1.08997 * 109.46959 * 59.99804 * 13 12 10 32 32 H 1.09007 * 109.46821 * 180.02562 * 13 12 10 33 33 H 1.08999 * 109.46671 * 185.00577 * 16 14 13 34 34 H 1.09003 * 109.46943 * 304.99829 * 16 14 13 35 35 H 1.09004 * 109.46816 * 59.99857 * 18 14 13 36 36 H 1.08996 * 109.46897 * 179.97438 * 18 14 13 37 37 H 1.09001 * 109.47465 * 299.99672 * 19 10 9 38 38 H 1.08999 * 109.47602 * 59.99985 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2898 1.0793 0.0000 4 6 1.7414 2.4829 0.0006 5 8 2.0698 3.1221 1.2358 6 14 2.4872 3.4416 -1.4120 7 7 3.5850 0.8186 -0.0057 8 6 3.9314 -0.4311 -0.0011 9 7 5.2384 -0.8927 -0.0017 10 6 5.5064 -2.3330 -0.0028 11 1 4.7452 -2.8438 -0.5925 12 6 6.8849 -2.5947 -0.6129 13 6 7.1646 -4.0989 -0.6147 14 6 7.1345 -4.6250 0.8217 15 1 7.8958 -4.1145 1.4116 16 6 7.4136 -6.1293 0.8199 17 9 8.7171 -6.3612 0.3681 18 6 5.7559 -4.3632 1.4319 19 6 5.4764 -2.8585 1.4338 20 16 2.5412 -1.4261 -0.0009 21 1 -0.3634 0.0918 -1.0235 22 1 -0.3634 -0.9323 0.4324 23 1 -0.3633 0.8405 0.5914 24 1 0.6580 2.4498 -0.1147 25 1 3.0196 3.1867 1.4049 26 1 1.9541 4.8275 -1.4228 27 1 3.9665 3.4669 -1.2837 28 1 5.9754 -0.2622 -0.0014 29 1 6.9062 -2.2204 -1.6365 30 1 7.6461 -2.0839 -0.0233 31 1 6.4033 -4.6093 -1.2046 32 1 8.1469 -4.2853 -1.0490 33 1 7.3046 -6.5202 1.8316 34 1 6.7055 -6.6294 0.1590 35 1 4.9946 -4.8737 0.8419 36 1 5.7343 -4.7384 2.4550 37 1 6.2377 -2.3477 2.0235 38 1 4.4944 -2.6720 1.8685 There are 50 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 50 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_16769144_15704122.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:58:53 Heat of formation + Delta-G solvation = -49.660055 kcal Electronic energy + Delta-G solvation = -20813.478277 eV Core-core repulsion = 17504.775498 eV Total energy + Delta-G solvation = -3308.702779 eV No. of doubly occupied orbitals = 50 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 287.110 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.55482 -41.11166 -40.08688 -37.78540 -36.37182 -33.48672 -31.88260 -31.41514 -28.95307 -26.57932 -25.57059 -24.43930 -23.69253 -22.44792 -21.27609 -20.30937 -19.14280 -18.08986 -17.49323 -17.11074 -16.74884 -16.67538 -16.38281 -16.17448 -15.76098 -15.51055 -15.16336 -14.97577 -14.41886 -14.23697 -14.06204 -13.92807 -13.53126 -13.50561 -13.29469 -13.20121 -12.89847 -12.60741 -12.34805 -12.17168 -12.00633 -11.80703 -11.52400 -11.40251 -11.32741 -10.98008 -10.68538 -10.48266 -10.03303 -8.63853 -4.98170 -0.02470 0.16280 0.74240 1.24365 1.66383 1.77007 1.90604 2.06511 3.29401 3.47197 3.50963 3.57378 3.65346 3.88186 3.95285 4.05554 4.15412 4.21884 4.23725 4.30197 4.39462 4.43981 4.49951 4.51210 4.70421 4.77464 4.81772 4.83589 4.90983 4.98280 5.02906 5.05841 5.12116 5.14314 5.27892 5.31060 5.41379 5.66228 6.29054 6.33117 6.91222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.250 4.250 3 C 0.056 3.944 4 C -0.043 4.043 5 O -0.542 6.542 6 Si 0.774 3.226 7 N -0.578 5.578 8 C 0.307 3.693 9 N -0.688 5.688 10 C 0.154 3.846 11 H 0.085 0.915 12 C -0.118 4.118 13 C -0.110 4.110 14 C -0.119 4.119 15 H 0.077 0.923 16 C 0.056 3.944 17 F -0.239 7.239 18 C -0.105 4.105 19 C -0.132 4.132 20 S 0.128 5.872 21 H 0.094 0.906 22 H 0.074 0.926 23 H 0.081 0.919 24 H 0.141 0.859 25 H 0.383 0.617 26 H -0.288 1.288 27 H -0.298 1.298 28 H 0.412 0.588 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.068 0.932 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.067 0.933 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.110 -4.982 -1.644 5.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.374 4.374 3 C -0.073 4.073 4 C -0.154 4.154 5 O -0.349 6.349 6 Si 0.679 3.321 7 N -0.305 5.305 8 C -0.064 4.064 9 N -0.328 5.328 10 C 0.049 3.951 11 H 0.103 0.897 12 C -0.156 4.156 13 C -0.148 4.148 14 C -0.137 4.137 15 H 0.095 0.905 16 C 0.002 3.998 17 F -0.220 7.220 18 C -0.143 4.143 19 C -0.171 4.171 20 S 0.377 5.623 21 H 0.112 0.888 22 H 0.093 0.907 23 H 0.100 0.900 24 H 0.158 0.842 25 H 0.232 0.768 26 H -0.215 1.215 27 H -0.225 1.225 28 H 0.249 0.751 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.096 0.904 32 H 0.087 0.913 33 H 0.106 0.894 34 H 0.108 0.892 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.085 0.915 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.960 -5.154 -1.858 5.819 hybrid contribution 1.132 1.360 1.196 2.136 sum -0.829 -3.794 -0.662 3.939 Atomic orbital electron populations 1.20315 0.85189 1.03674 1.04136 1.25486 1.02357 0.93192 1.16332 1.20059 0.86860 0.97530 1.02891 1.24823 1.05681 0.89797 0.95128 1.86533 1.30134 1.80133 1.38096 0.93897 0.77288 0.77478 0.83433 1.66052 1.18115 1.17870 1.28487 1.23533 0.92856 0.91601 0.98428 1.44227 1.01189 1.07705 1.79670 1.21272 0.98898 0.77812 0.97095 0.89658 1.21699 0.94771 0.97346 1.01745 1.21522 1.02870 0.94367 0.96077 1.21783 0.99073 0.95131 0.97757 0.90458 1.22294 0.78853 0.96836 1.01840 1.92733 1.41868 1.95861 1.91542 1.21447 0.95732 0.94891 1.02261 1.22002 1.02364 0.96676 0.96084 1.83742 0.95466 1.09467 1.73648 0.88770 0.90693 0.90027 0.84173 0.76794 1.21535 1.22549 0.75052 0.90573 0.90832 0.90381 0.91322 0.89446 0.89177 0.90067 0.90169 0.91471 0.91856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 0.23 9.71 71.23 0.69 0.92 16 2 C -0.25 -0.60 6.57 24.57 0.16 -0.44 16 3 C 0.06 0.30 5.20 41.40 0.22 0.51 16 4 C -0.04 -0.15 2.84 71.23 0.20 0.05 16 5 O -0.54 -3.96 12.88 -148.98 -1.92 -5.88 16 6 Si 0.77 2.58 32.61 68.60 2.24 4.82 16 7 N -0.58 -4.29 9.76 -189.87 -1.85 -6.14 16 8 C 0.31 1.17 8.22 179.32 1.47 2.65 16 9 N -0.69 0.34 5.23 -330.41 -1.73 -1.39 16 10 C 0.15 -0.70 2.40 44.99 0.11 -0.59 16 11 H 0.09 -0.41 7.26 -2.39 -0.02 -0.42 16 12 C -0.12 0.68 5.39 30.59 0.16 0.84 16 13 C -0.11 0.64 5.12 30.59 0.16 0.79 16 14 C -0.12 0.72 2.49 -10.79 -0.03 0.69 16 15 H 0.08 -0.33 8.14 -2.39 -0.02 -0.35 16 16 C 0.06 -0.28 6.91 71.98 0.50 0.22 16 17 F -0.24 -0.70 17.04 44.97 0.77 0.07 16 18 C -0.11 0.81 5.20 30.62 0.16 0.96 16 19 C -0.13 0.65 5.51 30.61 0.17 0.82 16 20 S 0.13 0.09 21.68 -56.49 -1.22 -1.13 16 21 H 0.09 -0.61 8.14 -2.39 -0.02 -0.63 16 22 H 0.07 -0.32 8.14 -2.38 -0.02 -0.34 16 23 H 0.08 -0.27 7.17 -2.38 -0.02 -0.29 16 24 H 0.14 -0.11 6.33 -2.38 -0.02 -0.13 16 25 H 0.38 1.77 8.70 -74.06 -0.64 1.13 16 26 H -0.29 -2.37 7.11 99.48 0.71 -1.66 16 27 H -0.30 -3.28 7.11 99.48 0.71 -2.57 16 28 H 0.41 -0.39 8.73 -92.71 -0.81 -1.20 16 29 H 0.08 -0.41 8.14 -2.38 -0.02 -0.43 16 30 H 0.07 -0.40 8.14 -2.39 -0.02 -0.42 16 31 H 0.08 -0.56 8.14 -2.39 -0.02 -0.58 16 32 H 0.07 -0.24 7.94 -2.38 -0.02 -0.26 16 33 H 0.09 -0.64 8.14 -2.39 -0.02 -0.66 16 34 H 0.09 -0.71 8.14 -2.39 -0.02 -0.73 16 35 H 0.08 -0.75 8.14 -2.38 -0.02 -0.77 16 36 H 0.08 -0.67 8.14 -2.39 -0.02 -0.69 16 37 H 0.07 -0.24 8.14 -2.39 -0.02 -0.26 16 38 H 0.06 -0.18 8.04 -2.39 -0.02 -0.20 16 Total: 0.00 -13.59 322.69 -0.09 -13.68 By element: Atomic # 1 Polarization: -11.12 SS G_CDS: -0.34 Total: -11.46 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: 3.97 Total: 7.43 kcal Atomic # 7 Polarization: -3.95 SS G_CDS: -3.58 Total: -7.53 kcal Atomic # 8 Polarization: -3.96 SS G_CDS: -1.92 Total: -5.88 kcal Atomic # 9 Polarization: -0.70 SS G_CDS: 0.77 Total: 0.07 kcal Atomic # 14 Polarization: 2.58 SS G_CDS: 2.24 Total: 4.82 kcal Atomic # 16 Polarization: 0.09 SS G_CDS: -1.22 Total: -1.13 kcal Total: -13.59 -0.09 -13.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16769144_15704122.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.982 kcal (2) G-P(sol) polarization free energy of solvation -13.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds