Wall clock time and date at job start Mon Mar 8 2021 10:21:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86294 * 109.47170 * 2 1 4 4 C 1.50702 * 109.47061 * 239.99619 * 2 1 3 5 5 C 1.37987 * 120.32330 * 120.02560 * 4 2 1 6 6 N 1.32007 * 120.89907 * 179.72466 * 5 4 2 7 7 C 1.32338 * 121.64245 * 0.51717 * 6 5 4 8 8 N 1.39150 * 119.71596 * 179.75616 * 7 6 5 9 9 C 1.46500 * 119.99854 * 359.72894 * 8 7 6 10 10 C 1.52997 * 109.47204 * 179.97438 * 9 8 7 11 11 F 1.39905 * 109.47057 * 60.00047 * 10 9 8 12 12 C 1.53002 * 109.47092 * 179.97438 * 10 9 8 13 13 C 1.52997 * 109.46965 * 60.00457 * 12 10 9 14 14 C 1.52997 * 109.47457 * 59.99865 * 13 12 10 15 15 H 1.08996 * 109.46952 * 59.99890 * 14 13 12 16 16 C 1.53006 * 109.46943 * 179.97438 * 14 13 12 17 17 O 1.42903 * 109.46650 * 184.99526 * 16 14 13 18 18 C 1.53002 * 109.46817 * 299.99831 * 14 13 12 19 19 C 1.52996 * 109.46972 * 60.00267 * 18 14 13 20 20 C 1.39345 * 120.56743 * 359.48393 * 7 6 5 21 21 F 1.35095 * 120.47093 * 180.27706 * 20 7 6 22 22 C 1.38441 * 119.05360 * 0.24802 * 20 7 6 23 23 H 0.96698 * 114.00379 * 60.00398 * 1 2 3 24 24 H 1.08999 * 109.46941 * 119.99821 * 2 1 3 25 25 H 1.48510 * 109.99978 * 298.68072 * 3 2 1 26 26 H 1.48503 * 110.00390 * 59.99554 * 3 2 1 27 27 H 1.07998 * 119.54887 * 359.97156 * 5 4 2 28 28 H 0.96998 * 120.00152 * 179.72525 * 8 7 6 29 29 H 1.09002 * 109.47092 * 59.99889 * 9 8 7 30 30 H 1.09000 * 109.47175 * 299.99931 * 9 8 7 31 31 H 1.09004 * 109.46930 * 180.02562 * 12 10 9 32 32 H 1.08995 * 109.47208 * 299.99391 * 12 10 9 33 33 H 1.09001 * 109.46989 * 180.02562 * 13 12 10 34 34 H 1.09000 * 109.47058 * 299.99099 * 13 12 10 35 35 H 1.08997 * 109.47298 * 305.00133 * 16 14 13 36 36 H 1.09003 * 109.46505 * 65.00256 * 16 14 13 37 37 H 0.96703 * 113.99433 * 179.97438 * 17 16 14 38 38 H 1.09004 * 109.46733 * 180.02562 * 18 14 13 39 39 H 1.08996 * 109.47407 * 299.99780 * 18 14 13 40 40 H 1.09001 * 109.46993 * 179.97438 * 19 18 14 41 41 H 1.09000 * 109.47380 * 60.00304 * 19 18 14 42 42 H 1.08008 * 120.75559 * 179.97438 * 22 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2304 5 6 2.7255 -0.0466 -2.1429 6 7 3.1762 -0.6594 -3.2217 7 6 2.8795 -1.9236 -3.4771 8 7 3.3722 -2.5286 -4.6292 9 6 4.2107 -1.7647 -5.5564 10 6 4.6164 -2.6574 -6.7308 11 9 3.4691 -3.1012 -7.3972 12 6 5.4915 -1.8594 -7.6995 13 6 6.7462 -1.3735 -6.9711 14 6 7.5314 -2.5782 -6.4486 15 1 7.8203 -3.2142 -7.2854 16 6 8.7865 -2.0923 -5.7208 17 8 9.5786 -3.2172 -5.3345 18 6 6.6562 -3.3762 -5.4800 19 6 5.4016 -3.8621 -6.2084 20 6 2.0825 -2.6556 -2.5992 21 9 1.7854 -3.9477 -2.8590 22 6 1.5999 -2.0402 -1.4569 23 1 -0.3934 0.4416 -0.7650 24 1 1.7923 -0.5138 0.8900 25 1 1.5879 2.4585 -1.2243 26 1 1.5614 2.4679 1.2084 27 1 2.9851 0.9874 -1.9700 28 1 3.1607 -3.4561 -4.8184 29 1 5.1048 -1.4192 -5.0373 30 1 3.6519 -0.9059 -5.9283 31 1 5.7802 -2.4952 -8.5364 32 1 4.9321 -1.0012 -8.0718 33 1 7.3695 -0.8046 -7.6610 34 1 6.4573 -0.7375 -6.1344 35 1 9.3658 -1.4505 -6.3845 36 1 8.4967 -1.5299 -4.8331 37 1 10.3923 -2.9833 -4.8672 38 1 7.2158 -4.2342 -5.1074 39 1 6.3672 -2.7402 -4.6432 40 1 4.7783 -4.4309 -5.5184 41 1 5.6905 -4.4981 -7.0450 42 1 0.9795 -2.5816 -0.7579 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_16921694_17656566.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:21:19 Heat of formation + Delta-G solvation = -139.597133 kcal Electronic energy + Delta-G solvation = -27278.574569 eV Core-core repulsion = 23088.683411 eV Total energy + Delta-G solvation = -4189.891157 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 315.143 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.99559 -48.84545 -41.46134 -40.22181 -38.28398 -37.50743 -36.31778 -33.39431 -32.74091 -32.01960 -31.24661 -28.14191 -26.25891 -25.77165 -24.49596 -23.91696 -22.89275 -22.00124 -20.32910 -19.35290 -18.66160 -18.38257 -18.15880 -17.72576 -17.59256 -17.05989 -16.75031 -16.43145 -16.12142 -15.98806 -15.75214 -15.68566 -15.49134 -15.11338 -14.96129 -14.56319 -14.32843 -14.24278 -14.05106 -13.99875 -13.68410 -13.44373 -13.29687 -13.03680 -12.67423 -12.57932 -12.19056 -12.14091 -12.06900 -11.58740 -11.44761 -11.17876 -11.09727 -10.82304 -10.78251 -10.69262 -10.55150 -8.82525 -4.89060 -0.11277 0.07394 1.31867 1.63917 1.86576 2.00665 2.50938 2.98410 3.13723 3.26118 3.30784 3.38083 3.42415 3.42911 3.58339 3.65031 3.83365 3.85004 3.97793 4.03205 4.22135 4.30430 4.36113 4.40040 4.44297 4.50718 4.54190 4.58211 4.66098 4.71727 4.72719 4.78075 4.92514 4.96099 4.97420 5.05549 5.10983 5.15228 5.28933 5.33901 5.43973 5.85041 6.05523 6.49586 6.87270 6.91563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.549 6.549 2 C -0.069 4.069 3 Si 0.768 3.232 4 C -0.202 4.202 5 C 0.149 3.851 6 N -0.523 5.523 7 C 0.382 3.618 8 N -0.715 5.715 9 C 0.117 3.883 10 C 0.109 3.891 11 F -0.221 7.221 12 C -0.131 4.131 13 C -0.109 4.109 14 C -0.090 4.090 15 H 0.070 0.930 16 C 0.077 3.923 17 O -0.597 6.597 18 C -0.101 4.101 19 C -0.136 4.136 20 C -0.039 4.039 21 F -0.143 7.143 22 C -0.039 4.039 23 H 0.386 0.614 24 H 0.130 0.870 25 H -0.277 1.277 26 H -0.301 1.301 27 H 0.187 0.813 28 H 0.413 0.587 29 H 0.101 0.899 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.058 0.942 36 H 0.055 0.945 37 H 0.396 0.604 38 H 0.065 0.935 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.077 0.923 42 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.520 3.911 0.353 6.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.357 6.357 2 C -0.178 4.178 3 Si 0.673 3.327 4 C -0.207 4.207 5 C -0.008 4.008 6 N -0.240 5.240 7 C 0.144 3.856 8 N -0.349 5.349 9 C -0.007 4.007 10 C 0.090 3.910 11 F -0.202 7.202 12 C -0.169 4.169 13 C -0.147 4.147 14 C -0.109 4.109 15 H 0.089 0.911 16 C -0.001 4.001 17 O -0.405 6.405 18 C -0.139 4.139 19 C -0.174 4.174 20 C -0.065 4.065 21 F -0.122 7.122 22 C -0.065 4.065 23 H 0.236 0.764 24 H 0.147 0.853 25 H -0.203 1.203 26 H -0.229 1.229 27 H 0.203 0.797 28 H 0.251 0.749 29 H 0.119 0.881 30 H 0.090 0.910 31 H 0.100 0.900 32 H 0.106 0.894 33 H 0.107 0.893 34 H 0.100 0.900 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.245 0.755 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.095 0.905 42 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 5.527 4.595 -0.163 7.189 hybrid contribution -1.682 -1.314 0.093 2.136 sum 3.845 3.281 -0.070 5.055 Atomic orbital electron populations 1.86585 1.18567 1.80363 1.50208 1.25083 0.83317 1.11791 0.97648 0.94196 0.90050 0.71538 0.76955 1.20932 1.04540 0.94621 1.00640 1.22735 0.90990 0.99958 0.87099 1.67354 1.27003 1.07140 1.22543 1.18518 0.90380 0.89410 0.87296 1.44501 1.54823 1.14842 1.20697 1.22011 0.95909 0.93795 0.88936 1.21352 0.82389 0.95434 0.91791 1.92863 1.53436 1.91147 1.82720 1.22028 0.96408 1.00743 0.97741 1.21540 0.95194 0.96894 1.01039 1.21204 0.94018 0.97467 0.98173 0.91105 1.22279 0.91646 0.87753 0.98377 1.86429 1.39336 1.34841 1.79889 1.21442 0.94236 1.00401 0.97816 1.22081 0.97427 0.96493 1.01422 1.18169 1.07848 0.80839 0.99661 1.91464 1.92379 1.34212 1.94129 1.21429 0.95971 0.94815 0.94316 0.76417 0.85262 1.20292 1.22878 0.79707 0.74917 0.88111 0.90955 0.90020 0.89437 0.89272 0.90024 0.92394 0.92675 0.75484 0.91638 0.91295 0.91217 0.90464 0.82788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.29 12.78 -148.98 -1.90 -2.19 16 2 C -0.07 0.22 2.84 71.24 0.20 0.42 16 3 Si 0.77 -3.78 29.82 68.60 2.05 -1.74 16 4 C -0.20 0.26 5.40 -19.77 -0.11 0.15 16 5 C 0.15 -0.20 9.84 84.61 0.83 0.63 16 6 N -0.52 -1.34 9.57 -193.03 -1.85 -3.19 16 7 C 0.38 1.55 7.49 133.08 1.00 2.54 16 8 N -0.71 -1.58 5.34 -344.81 -1.84 -3.42 16 9 C 0.12 -0.07 4.20 86.38 0.36 0.29 16 10 C 0.11 -0.08 1.07 -10.79 -0.01 -0.09 16 11 F -0.22 -1.15 16.67 44.97 0.75 -0.40 16 12 C -0.13 0.51 5.19 30.59 0.16 0.67 16 13 C -0.11 0.70 4.93 30.59 0.15 0.85 16 14 C -0.09 0.31 2.43 -10.79 -0.03 0.29 16 15 H 0.07 -0.08 8.14 -2.39 -0.02 -0.10 16 16 C 0.08 -0.32 6.43 71.98 0.46 0.14 16 17 O -0.60 0.43 13.20 -148.98 -1.97 -1.53 16 18 C -0.10 0.17 4.83 30.59 0.15 0.32 16 19 C -0.14 0.13 5.01 30.59 0.15 0.28 16 20 C -0.04 -0.18 7.35 22.58 0.17 -0.01 16 21 F -0.14 -0.98 16.65 44.97 0.75 -0.23 16 22 C -0.04 -0.07 9.75 22.48 0.22 0.15 16 23 H 0.39 -1.85 8.70 -74.06 -0.64 -2.50 16 24 H 0.13 -0.64 7.96 -2.39 -0.02 -0.66 16 25 H -0.28 0.40 7.11 99.48 0.71 1.10 16 26 H -0.30 -0.97 7.11 99.48 0.71 -0.26 16 27 H 0.19 -1.27 4.88 -2.91 -0.01 -1.28 16 28 H 0.41 0.97 6.74 -92.71 -0.62 0.34 16 29 H 0.10 -0.24 4.81 -2.39 -0.01 -0.26 16 30 H 0.07 0.05 8.14 -2.39 -0.02 0.04 16 31 H 0.08 -0.27 8.14 -2.38 -0.02 -0.29 16 32 H 0.09 -0.41 8.14 -2.39 -0.02 -0.43 16 33 H 0.09 -0.74 8.14 -2.39 -0.02 -0.76 16 34 H 0.08 -0.61 6.43 -2.39 -0.02 -0.63 16 35 H 0.06 -0.36 8.14 -2.39 -0.02 -0.38 16 36 H 0.05 -0.32 8.14 -2.39 -0.02 -0.34 16 37 H 0.40 -3.40 9.12 -74.06 -0.68 -4.08 16 38 H 0.06 0.09 7.82 -2.39 -0.02 0.08 16 39 H 0.07 -0.12 6.43 -2.39 -0.02 -0.14 16 40 H 0.07 -0.01 6.87 -2.39 -0.02 -0.03 16 41 H 0.08 -0.02 8.14 -2.39 -0.02 -0.04 16 42 H 0.15 0.03 8.06 -2.91 -0.02 0.01 16 Total: 0.00 -15.54 337.91 -1.12 -16.67 By element: Atomic # 1 Polarization: -9.79 SS G_CDS: -0.82 Total: -10.61 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: 3.71 Total: 6.63 kcal Atomic # 7 Polarization: -2.92 SS G_CDS: -3.69 Total: -6.61 kcal Atomic # 8 Polarization: 0.15 SS G_CDS: -3.87 Total: -3.72 kcal Atomic # 9 Polarization: -2.13 SS G_CDS: 1.50 Total: -0.63 kcal Atomic # 14 Polarization: -3.78 SS G_CDS: 2.05 Total: -1.74 kcal Total: -15.54 -1.12 -16.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16921694_17656566.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.928 kcal (2) G-P(sol) polarization free energy of solvation -15.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds