Wall clock time and date at job start Mon Mar 8 2021 06:57:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86305 * 109.47231 * 2 1 4 4 C 1.50694 * 109.47084 * 119.99923 * 2 1 3 5 5 C 1.38603 * 120.72052 * 65.00038 * 4 2 1 6 6 N 1.32280 * 119.19802 * 180.02562 * 5 4 2 7 7 C 1.32487 * 120.73981 * 359.97438 * 6 5 4 8 8 N 1.38409 * 119.21845 * 179.97438 * 7 6 5 9 9 C 1.46494 * 120.00508 * 179.97438 * 8 7 6 10 10 C 1.52999 * 109.47391 * 180.02562 * 9 8 7 11 11 H 1.08993 * 112.90825 * 316.25137 * 10 9 8 12 12 C 1.53962 * 113.66529 * 87.55384 * 10 9 8 13 13 C 1.53782 * 87.11063 * 139.88900 * 12 10 9 14 14 H 1.09001 * 113.61250 * 220.08565 * 13 12 10 15 15 N 1.46496 * 113.68971 * 89.19569 * 13 12 10 16 16 C 1.34426 * 126.82405 * 347.47108 * 15 13 12 17 17 N 1.30837 * 108.08081 * 179.97438 * 16 15 13 18 18 C 1.33237 * 109.82454 * 359.97438 * 17 16 15 19 19 N 1.30716 * 108.94967 * 359.76005 * 18 17 16 20 20 C 1.53781 * 87.08260 * 334.63747 * 13 12 10 21 21 N 1.32493 * 121.56733 * 0.27592 * 7 6 5 22 22 C 1.32272 * 120.73819 * 359.44315 * 21 7 6 23 23 H 0.96703 * 113.99814 * 300.00281 * 1 2 3 24 24 H 1.08996 * 109.47225 * 240.00038 * 2 1 3 25 25 H 1.48505 * 109.99885 * 300.00073 * 3 2 1 26 26 H 1.48501 * 109.99634 * 61.31694 * 3 2 1 27 27 H 1.08004 * 120.40149 * 0.04319 * 5 4 2 28 28 H 0.97000 * 119.99812 * 0.02562 * 8 7 6 29 29 H 1.09002 * 109.47287 * 59.99955 * 9 8 7 30 30 H 1.09004 * 109.47020 * 300.00236 * 9 8 7 31 31 H 1.08997 * 113.53543 * 25.33574 * 12 10 9 32 32 H 1.08998 * 113.73879 * 254.47172 * 12 10 9 33 33 H 1.08000 * 125.96416 * 359.97438 * 16 15 13 34 34 H 1.08006 * 125.53032 * 179.97438 * 18 17 16 35 35 H 1.09002 * 113.61445 * 139.98212 * 20 13 12 36 36 H 1.09002 * 113.61408 * 270.79943 * 20 13 12 37 37 H 1.08000 * 120.40224 * 180.30006 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 1.6926 -2.0633 1.4140 6 7 2.1469 -2.6565 2.5056 7 6 2.8232 -1.9723 3.4165 8 7 3.2837 -2.6245 4.5471 9 6 4.0338 -1.8848 5.5651 10 6 4.4231 -2.8329 6.7011 11 1 3.6093 -3.4933 7.0002 12 6 5.7567 -3.5652 6.4653 13 6 6.0541 -3.3412 7.9574 14 1 7.0915 -3.0756 8.1607 15 7 5.5615 -4.4152 8.8233 16 6 4.7106 -5.3986 8.4828 17 7 4.5211 -6.1539 9.5342 18 6 5.2314 -5.6867 10.5601 19 7 5.8897 -4.6260 10.1726 20 6 5.1110 -2.1288 7.8826 21 7 3.0642 -0.6773 3.2738 22 6 2.6426 -0.0252 2.2030 23 1 -0.3933 0.4418 0.7651 24 1 1.7924 -0.5138 -0.8899 25 1 1.5615 2.4679 -1.2085 26 1 1.5879 2.4585 1.2242 27 1 1.1425 -2.6265 0.6746 28 1 3.1103 -3.5715 4.6651 29 1 3.4140 -1.0796 5.9597 30 1 4.9348 -1.4642 5.1185 31 1 6.4349 -3.0309 5.7999 32 1 5.6394 -4.6148 6.1962 33 1 4.2617 -5.5405 7.5108 34 1 5.2615 -6.1169 11.5503 35 1 4.4710 -2.0189 8.7581 36 1 5.6130 -1.2016 7.6062 37 1 2.8462 1.0294 2.0899 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_16945870_12175864.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:57:32 Heat of formation + Delta-G solvation = 160.123694 kcal Electronic energy + Delta-G solvation = -21846.357246 eV Core-core repulsion = 18436.208656 eV Total energy + Delta-G solvation = -3410.148590 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.22824 -42.07151 -40.33722 -38.23873 -36.64452 -34.72178 -33.59325 -32.48571 -32.06412 -29.02893 -26.94337 -26.41134 -25.93370 -24.73074 -23.13342 -23.03116 -22.35735 -20.76300 -19.37273 -18.70875 -18.15119 -17.87651 -16.95915 -16.71630 -16.40948 -16.16606 -16.04315 -15.95115 -15.75314 -15.37492 -15.18415 -14.76095 -14.54370 -14.07821 -13.96880 -13.49835 -13.32160 -13.16437 -12.96267 -12.26832 -12.11599 -11.89855 -11.86765 -11.72433 -11.55747 -11.22675 -11.06719 -10.87663 -10.68671 -10.58829 -10.04386 -9.08743 -4.90057 0.06700 0.15196 0.59413 1.27532 1.33094 1.60998 1.83824 1.93159 1.99570 2.80756 3.10168 3.16426 3.29224 3.41783 3.44506 3.52875 3.66063 3.69114 3.75059 3.86752 3.88205 4.11296 4.18484 4.24370 4.38486 4.57260 4.66032 4.68565 4.69639 4.77052 4.78091 4.90827 4.94495 5.13824 5.26490 5.30903 5.40799 5.77123 5.88392 6.05431 6.41340 6.49863 7.05602 7.28848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.548 6.548 2 C -0.057 4.057 3 Si 0.761 3.239 4 C -0.285 4.285 5 C 0.213 3.787 6 N -0.590 5.590 7 C 0.551 3.449 8 N -0.690 5.690 9 C 0.155 3.845 10 C -0.119 4.119 11 H 0.100 0.900 12 C -0.122 4.122 13 C 0.115 3.885 14 H 0.118 0.882 15 N -0.362 5.362 16 C 0.256 3.744 17 N -0.579 5.579 18 C 0.189 3.811 19 N -0.350 5.350 20 C -0.126 4.126 21 N -0.577 5.577 22 C 0.193 3.807 23 H 0.385 0.615 24 H 0.131 0.869 25 H -0.302 1.302 26 H -0.279 1.279 27 H 0.182 0.818 28 H 0.419 0.581 29 H 0.061 0.939 30 H 0.079 0.921 31 H 0.129 0.871 32 H 0.091 0.909 33 H 0.249 0.751 34 H 0.237 0.763 35 H 0.062 0.938 36 H 0.126 0.874 37 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.064 2.626 -3.111 5.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.355 6.355 2 C -0.167 4.167 3 Si 0.666 3.334 4 C -0.293 4.293 5 C 0.046 3.954 6 N -0.312 5.312 7 C 0.194 3.806 8 N -0.327 5.327 9 C 0.031 3.969 10 C -0.138 4.138 11 H 0.118 0.882 12 C -0.160 4.160 13 C 0.013 3.987 14 H 0.136 0.864 15 N -0.152 5.152 16 C -0.040 4.040 17 N -0.307 5.307 18 C -0.113 4.113 19 N -0.178 5.178 20 C -0.165 4.165 21 N -0.300 5.300 22 C 0.026 3.974 23 H 0.234 0.766 24 H 0.149 0.851 25 H -0.230 1.230 26 H -0.206 1.206 27 H 0.199 0.801 28 H 0.258 0.742 29 H 0.079 0.921 30 H 0.098 0.902 31 H 0.147 0.853 32 H 0.109 0.891 33 H 0.264 0.736 34 H 0.253 0.747 35 H 0.081 0.919 36 H 0.144 0.856 37 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 3.714 2.947 -2.192 5.223 hybrid contribution -1.700 -0.107 -0.148 1.709 sum 2.014 2.840 -2.340 4.195 Atomic orbital electron populations 1.86594 1.18604 1.80231 1.50121 1.24858 0.83141 1.11203 0.97536 0.94272 0.90142 0.72208 0.76782 1.21667 1.08651 0.97333 1.01660 1.23146 0.89113 0.91671 0.91514 1.68003 1.17368 1.40708 1.05170 1.19674 0.87502 0.85859 0.87591 1.44207 1.58466 1.12443 1.17593 1.21293 0.95875 0.93566 0.86175 1.22903 0.97744 0.98169 0.94982 0.88206 1.23570 0.97080 1.03310 0.92039 1.22477 0.99930 0.86115 0.90199 0.86432 1.50406 1.34102 1.22781 1.07935 1.26598 0.91310 0.85300 1.00785 1.70597 1.28164 1.31660 1.00297 1.26551 0.92393 0.91541 1.00825 1.78022 1.25774 1.21392 0.92617 1.23348 0.97570 0.97811 0.97782 1.67971 1.27933 1.08307 1.25835 1.23195 0.87780 1.00267 0.86208 0.76596 0.85083 1.22958 1.20582 0.80145 0.74236 0.92061 0.90248 0.85315 0.89057 0.73564 0.74721 0.91883 0.85556 0.79843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.38 12.85 -148.98 -1.91 -1.53 16 2 C -0.06 0.24 2.83 71.23 0.20 0.44 16 3 Si 0.76 -3.95 29.95 68.60 2.05 -1.90 16 4 C -0.28 0.62 5.36 -19.69 -0.11 0.52 16 5 C 0.21 0.07 10.99 84.71 0.93 1.00 16 6 N -0.59 -2.08 10.46 -197.98 -2.07 -4.15 16 7 C 0.55 1.28 8.43 261.49 2.20 3.48 16 8 N -0.69 2.29 5.70 -351.05 -2.00 0.29 16 9 C 0.15 -1.07 5.49 86.38 0.47 -0.60 16 10 C -0.12 1.19 3.36 -10.20 -0.03 1.15 16 11 H 0.10 -0.95 7.04 -2.39 -0.02 -0.97 16 12 C -0.12 1.39 6.90 31.18 0.22 1.61 16 13 C 0.12 -0.70 5.21 45.52 0.24 -0.46 16 14 H 0.12 -0.71 8.14 -2.39 -0.02 -0.73 16 15 N -0.36 -0.27 3.81 -328.94 -1.25 -1.52 16 16 C 0.26 -0.02 10.83 180.36 1.95 1.93 16 17 N -0.58 -3.63 11.19 -204.00 -2.28 -5.91 16 18 C 0.19 1.04 13.03 180.77 2.36 3.40 16 19 N -0.35 -2.42 12.70 -61.24 -0.78 -3.20 16 20 C -0.13 1.00 7.43 31.12 0.23 1.23 16 21 N -0.58 -1.15 9.59 -197.99 -1.90 -3.05 16 22 C 0.19 -0.30 9.92 84.71 0.84 0.54 16 23 H 0.38 -2.16 8.70 -74.06 -0.64 -2.81 16 24 H 0.13 -0.85 7.96 -2.39 -0.02 -0.87 16 25 H -0.30 -0.94 7.11 99.48 0.71 -0.23 16 26 H -0.28 0.46 7.02 99.48 0.70 1.16 16 27 H 0.18 -0.56 8.06 -2.91 -0.02 -0.58 16 28 H 0.42 -2.43 8.59 -92.71 -0.80 -3.22 16 29 H 0.06 -0.25 8.14 -2.39 -0.02 -0.27 16 30 H 0.08 -0.58 7.84 -2.38 -0.02 -0.60 16 31 H 0.13 -1.77 7.90 -2.39 -0.02 -1.78 16 32 H 0.09 -1.12 7.04 -2.39 -0.02 -1.14 16 33 H 0.25 -2.22 6.77 -2.91 -0.02 -2.24 16 34 H 0.24 -0.19 8.06 -2.91 -0.02 -0.21 16 35 H 0.06 -0.21 8.14 -2.39 -0.02 -0.23 16 36 H 0.13 -1.41 8.10 -2.39 -0.02 -1.42 16 37 H 0.19 -1.18 5.01 -2.91 -0.01 -1.19 16 Total: 0.00 -23.14 315.65 -0.93 -24.07 By element: Atomic # 1 Polarization: -17.07 SS G_CDS: -0.28 Total: -17.35 kcal Atomic # 6 Polarization: 4.75 SS G_CDS: 9.50 Total: 14.25 kcal Atomic # 7 Polarization: -7.25 SS G_CDS: -10.29 Total: -17.54 kcal Atomic # 8 Polarization: 0.38 SS G_CDS: -1.91 Total: -1.53 kcal Atomic # 14 Polarization: -3.95 SS G_CDS: 2.05 Total: -1.90 kcal Total: -23.14 -0.93 -24.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16945870_12175864.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.189 kcal (2) G-P(sol) polarization free energy of solvation -23.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 161.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 160.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds