Wall clock time and date at job start Mon Mar 8 2021 06:57:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86299 * 109.47352 * 2 1 4 4 C 1.50708 * 109.47199 * 120.00133 * 2 1 3 5 5 C 1.38838 * 120.33245 * 64.99613 * 4 2 1 6 6 C 1.38345 * 118.50279 * 180.02562 * 5 4 2 7 7 C 1.39098 * 119.09784 * 0.02562 * 6 5 4 8 8 N 1.39009 * 119.70419 * 179.97438 * 7 6 5 9 9 C 1.46498 * 119.99743 * 0.02562 * 8 7 6 10 10 C 1.52997 * 109.46923 * 180.02562 * 9 8 7 11 11 H 1.09005 * 112.85411 * 43.79853 * 10 9 8 12 12 C 1.53779 * 113.61921 * 174.99775 * 10 9 8 13 13 C 1.53780 * 87.08375 * 140.06116 * 12 10 9 14 14 H 1.08999 * 113.61352 * 219.93405 * 13 12 10 15 15 N 1.46505 * 113.61231 * 89.12018 * 13 12 10 16 16 C 1.34428 * 126.82137 * 275.02079 * 15 13 12 17 17 N 1.30829 * 108.07758 * 179.97438 * 16 15 13 18 18 C 1.33239 * 109.82920 * 0.02562 * 17 16 15 19 19 N 1.30714 * 108.94945 * 359.97438 * 18 17 16 20 20 C 1.53777 * 87.08133 * 334.57032 * 13 12 10 21 21 N 1.32422 * 120.59172 * 0.25844 * 7 6 5 22 22 C 1.31945 * 121.61946 * 359.46965 * 21 7 6 23 23 H 0.96695 * 114.00114 * 59.99674 * 1 2 3 24 24 H 1.09005 * 109.47098 * 239.99674 * 2 1 3 25 25 H 1.48504 * 109.99820 * 60.00467 * 3 2 1 26 26 H 1.48497 * 110.00019 * 181.32091 * 3 2 1 27 27 H 1.07997 * 120.75143 * 0.02562 * 5 4 2 28 28 H 1.08001 * 120.45168 * 180.02562 * 6 5 4 29 29 H 0.96996 * 119.99694 * 179.97438 * 8 7 6 30 30 H 1.08998 * 109.47481 * 59.99706 * 9 8 7 31 31 H 1.09003 * 109.46846 * 299.99362 * 9 8 7 32 32 H 1.09009 * 113.60983 * 25.51587 * 12 10 9 33 33 H 1.08997 * 113.61734 * 254.61589 * 12 10 9 34 34 H 1.08003 * 125.95935 * 359.97438 * 16 15 13 35 35 H 1.08002 * 125.53210 * 179.97438 * 18 17 16 36 36 H 1.08999 * 113.61590 * 139.98039 * 20 13 12 37 37 H 1.09005 * 113.61446 * 270.88194 * 20 13 12 38 38 H 1.08006 * 119.57409 * 180.24781 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7105 1.2305 5 6 1.6875 -2.0659 1.4062 6 6 2.1656 -2.6799 2.5500 7 6 2.8698 -1.9226 3.4803 8 7 3.3554 -2.5266 4.6343 9 6 3.1250 -3.9546 4.8662 10 6 3.7571 -4.3635 6.1981 11 1 3.5641 -3.6464 6.9961 12 6 3.4674 -5.8204 6.5961 13 6 4.9232 -5.8933 7.0862 14 1 5.4150 -6.8381 6.8547 15 7 5.0923 -5.4917 8.4849 16 6 5.2480 -4.2403 8.9506 17 7 5.3659 -4.3032 10.2520 18 6 5.2915 -5.5720 10.6518 19 7 5.1238 -6.3375 9.6057 20 6 5.2350 -4.7719 6.0812 21 7 3.0770 -0.6303 3.2791 22 6 2.6373 -0.0197 2.1952 23 1 -0.3933 0.4417 -0.7650 24 1 1.7923 -0.5139 -0.8900 25 1 1.5616 2.4678 1.2086 26 1 3.5346 1.7702 -0.0322 27 1 1.1371 -2.6284 0.6666 28 1 1.9944 -3.7329 2.7185 29 1 3.8474 -2.0026 5.2857 30 1 3.5749 -4.5312 4.0579 31 1 2.0530 -4.1492 4.8983 32 1 3.2594 -6.4717 5.7471 33 1 2.7323 -5.9169 7.3950 34 1 5.2715 -3.3400 8.3544 35 1 5.3587 -5.9128 11.6745 36 1 5.9269 -4.0220 6.4646 37 1 5.5102 -5.1366 5.0915 38 1 2.8284 1.0350 2.0629 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_16945870_13915762.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:57:35 Heat of formation + Delta-G solvation = 142.988876 kcal Electronic energy + Delta-G solvation = -21703.278845 eV Core-core repulsion = 18357.813144 eV Total energy + Delta-G solvation = -3345.465700 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 288.133 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.25874 -41.45893 -40.54241 -38.01405 -36.65828 -33.74686 -33.33420 -32.19060 -31.70509 -29.03693 -27.30505 -26.26646 -25.19337 -24.61139 -23.11382 -22.59971 -22.21315 -20.93753 -18.79268 -18.49644 -18.21425 -18.04757 -16.97537 -16.72765 -16.51287 -16.21494 -15.99222 -15.85868 -15.46884 -15.22314 -15.04433 -14.75609 -14.34240 -14.17317 -13.90479 -13.79479 -13.76103 -13.50933 -13.03332 -12.46113 -12.36615 -12.08604 -11.98556 -11.86795 -11.23622 -11.00587 -10.80287 -10.76095 -10.66994 -10.61136 -10.22156 -8.78703 -5.00156 0.18392 0.38286 0.58012 1.14064 1.27485 1.63035 1.91998 1.95889 1.98783 2.77023 2.81601 2.96414 3.21134 3.29345 3.31122 3.43997 3.51024 3.74893 3.79376 3.83162 3.92816 3.97872 4.05322 4.08843 4.22615 4.27318 4.29097 4.35764 4.38118 4.39986 4.55753 4.61684 4.67816 4.81243 4.95709 5.23210 5.24949 5.42316 5.42764 5.76222 5.89821 6.41558 6.61806 7.08035 7.08535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.548 6.548 2 C -0.056 4.056 3 Si 0.677 3.323 4 C -0.189 4.189 5 C -0.003 4.003 6 C -0.237 4.237 7 C 0.406 3.594 8 N -0.724 5.724 9 C 0.139 3.861 10 C -0.128 4.128 11 H 0.101 0.899 12 C -0.133 4.133 13 C 0.129 3.871 14 H 0.118 0.882 15 N -0.364 5.364 16 C 0.253 3.747 17 N -0.543 5.543 18 C 0.200 3.800 19 N -0.316 5.316 20 C -0.137 4.137 21 N -0.538 5.538 22 C 0.152 3.848 23 H 0.382 0.618 24 H 0.072 0.928 25 H -0.249 1.249 26 H -0.253 1.253 27 H 0.138 0.862 28 H 0.135 0.865 29 H 0.406 0.594 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.110 0.890 33 H 0.083 0.917 34 H 0.215 0.785 35 H 0.219 0.781 36 H 0.083 0.917 37 H 0.114 0.886 38 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.866 -0.954 -6.282 6.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.354 6.354 2 C -0.168 4.168 3 Si 0.579 3.421 4 C -0.194 4.194 5 C -0.028 4.028 6 C -0.261 4.261 7 C 0.170 3.830 8 N -0.357 5.357 9 C 0.015 3.985 10 C -0.147 4.147 11 H 0.119 0.881 12 C -0.172 4.172 13 C 0.025 3.975 14 H 0.135 0.865 15 N -0.154 5.154 16 C -0.044 4.044 17 N -0.270 5.270 18 C -0.103 4.103 19 N -0.142 5.142 20 C -0.175 4.175 21 N -0.255 5.255 22 C -0.006 4.006 23 H 0.229 0.771 24 H 0.090 0.910 25 H -0.174 1.174 26 H -0.178 1.178 27 H 0.156 0.844 28 H 0.153 0.847 29 H 0.241 0.759 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.128 0.872 33 H 0.101 0.899 34 H 0.231 0.769 35 H 0.236 0.764 36 H 0.102 0.898 37 H 0.132 0.868 38 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 0.105 -0.960 -4.450 4.553 hybrid contribution -0.230 -0.668 -0.328 0.779 sum -0.125 -1.628 -4.777 5.049 Atomic orbital electron populations 1.86496 1.17459 1.81765 1.49694 1.24427 0.85484 1.09982 0.96874 0.95288 0.80945 0.78312 0.87599 1.20029 1.05681 0.95341 0.98347 1.21191 0.92778 0.93315 0.95555 1.21448 1.06568 1.01407 0.96726 1.18352 0.89461 0.88349 0.86808 1.44430 1.61045 1.09201 1.20991 1.21393 1.00643 0.80450 0.96044 1.22948 0.95940 0.97971 0.97842 0.88082 1.23367 0.95818 0.95713 1.02271 1.22171 0.98901 1.00585 0.75817 0.86453 1.50248 1.53205 1.05261 1.06725 1.25982 0.96553 0.90357 0.91491 1.70612 1.24581 1.21989 1.09810 1.26121 0.97728 0.86789 0.99670 1.78112 1.25722 1.17612 0.92789 1.23543 0.96856 0.97310 0.99802 1.67115 1.26011 1.09185 1.23183 1.22048 0.92367 0.98444 0.87730 0.77089 0.90988 1.17352 1.17791 0.84437 0.84737 0.75861 0.91129 0.91249 0.87204 0.89868 0.76902 0.76426 0.89818 0.86780 0.83659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.02 12.82 -35.23 -0.45 -0.43 16 2 C -0.06 0.02 2.81 36.01 0.10 0.12 16 3 Si 0.68 -0.79 29.88 -169.99 -5.08 -5.87 16 4 C -0.19 -0.44 5.39 -104.46 -0.56 -1.00 16 5 C 0.00 0.00 9.83 -39.32 -0.39 -0.39 16 6 C -0.24 -0.21 9.33 -39.22 -0.37 -0.58 16 7 C 0.41 0.82 7.65 -155.01 -1.19 -0.36 16 8 N -0.72 0.72 5.73 -60.43 -0.35 0.37 16 9 C 0.14 -0.51 4.73 -4.04 -0.02 -0.53 16 10 C -0.13 0.57 3.34 -89.81 -0.30 0.27 16 11 H 0.10 -0.40 7.02 -51.93 -0.36 -0.76 16 12 C -0.13 0.52 7.44 -25.92 -0.19 0.33 16 13 C 0.13 -0.35 5.21 -67.12 -0.35 -0.70 16 14 H 0.12 -0.34 8.14 -51.93 -0.42 -0.76 16 15 N -0.36 -0.17 3.81 -55.32 -0.21 -0.38 16 16 C 0.25 0.09 10.82 -90.66 -0.98 -0.89 16 17 N -0.54 -1.69 11.19 -15.83 -0.18 -1.87 16 18 C 0.20 0.48 13.03 -91.81 -1.20 -0.71 16 19 N -0.32 -0.98 12.70 29.29 0.37 -0.61 16 20 C -0.14 0.66 6.89 -25.92 -0.18 0.48 16 21 N -0.54 -2.23 10.39 -12.44 -0.13 -2.36 16 22 C 0.15 0.54 9.84 -17.57 -0.17 0.37 16 23 H 0.38 -1.94 8.74 45.56 0.40 -1.54 16 24 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 25 H -0.25 -0.52 7.05 56.52 0.40 -0.12 16 26 H -0.25 -0.33 7.11 56.52 0.40 0.07 16 27 H 0.14 -0.06 8.06 -52.49 -0.42 -0.49 16 28 H 0.13 -0.21 6.71 -52.49 -0.35 -0.56 16 29 H 0.41 -0.60 8.60 -40.82 -0.35 -0.95 16 30 H 0.07 -0.31 7.64 -51.93 -0.40 -0.71 16 31 H 0.07 -0.23 7.93 -51.93 -0.41 -0.64 16 32 H 0.11 -0.61 8.10 -51.92 -0.42 -1.03 16 33 H 0.08 -0.17 8.14 -51.93 -0.42 -0.59 16 34 H 0.21 -0.72 6.75 -52.48 -0.35 -1.07 16 35 H 0.22 -0.18 8.06 -52.49 -0.42 -0.60 16 36 H 0.08 -0.40 7.03 -51.93 -0.37 -0.76 16 37 H 0.11 -0.66 7.90 -51.93 -0.41 -1.07 16 38 H 0.15 0.41 4.87 -52.48 -0.26 0.16 16 LS Contribution 318.64 15.07 4.80 4.80 Total: 0.00 -10.32 318.64 -11.60 -21.92 By element: Atomic # 1 Polarization: -7.40 SS G_CDS: -4.59 Total: -11.99 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: -5.79 Total: -3.59 kcal Atomic # 7 Polarization: -4.35 SS G_CDS: -0.49 Total: -4.84 kcal Atomic # 8 Polarization: 0.02 SS G_CDS: -0.45 Total: -0.43 kcal Atomic # 14 Polarization: -0.79 SS G_CDS: -5.08 Total: -5.87 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -10.32 -11.60 -21.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16945870_13915762.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.910 kcal (2) G-P(sol) polarization free energy of solvation -10.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 154.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 142.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds