Wall clock time and date at job start Mon Mar 8 2021 06:57:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86299 * 109.47352 * 2 1 4 4 C 1.50708 * 109.47199 * 120.00133 * 2 1 3 5 5 C 1.38838 * 120.33245 * 64.99613 * 4 2 1 6 6 C 1.38345 * 118.50279 * 180.02562 * 5 4 2 7 7 C 1.39098 * 119.09784 * 0.02562 * 6 5 4 8 8 N 1.39009 * 119.70419 * 179.97438 * 7 6 5 9 9 C 1.46498 * 119.99743 * 0.02562 * 8 7 6 10 10 C 1.52997 * 109.46923 * 180.02562 * 9 8 7 11 11 H 1.09005 * 112.85411 * 43.79853 * 10 9 8 12 12 C 1.53779 * 113.61921 * 174.99775 * 10 9 8 13 13 C 1.53780 * 87.08375 * 140.06116 * 12 10 9 14 14 H 1.08999 * 113.61352 * 219.93405 * 13 12 10 15 15 N 1.46505 * 113.61231 * 89.12018 * 13 12 10 16 16 C 1.34428 * 126.82137 * 275.02079 * 15 13 12 17 17 N 1.30829 * 108.07758 * 179.97438 * 16 15 13 18 18 C 1.33239 * 109.82920 * 0.02562 * 17 16 15 19 19 N 1.30714 * 108.94945 * 359.97438 * 18 17 16 20 20 C 1.53777 * 87.08133 * 334.57032 * 13 12 10 21 21 N 1.32422 * 120.59172 * 0.25844 * 7 6 5 22 22 C 1.31945 * 121.61946 * 359.46965 * 21 7 6 23 23 H 0.96695 * 114.00114 * 59.99674 * 1 2 3 24 24 H 1.09005 * 109.47098 * 239.99674 * 2 1 3 25 25 H 1.48504 * 109.99820 * 60.00467 * 3 2 1 26 26 H 1.48497 * 110.00019 * 181.32091 * 3 2 1 27 27 H 1.07997 * 120.75143 * 0.02562 * 5 4 2 28 28 H 1.08001 * 120.45168 * 180.02562 * 6 5 4 29 29 H 0.96996 * 119.99694 * 179.97438 * 8 7 6 30 30 H 1.08998 * 109.47481 * 59.99706 * 9 8 7 31 31 H 1.09003 * 109.46846 * 299.99362 * 9 8 7 32 32 H 1.09009 * 113.60983 * 25.51587 * 12 10 9 33 33 H 1.08997 * 113.61734 * 254.61589 * 12 10 9 34 34 H 1.08003 * 125.95935 * 359.97438 * 16 15 13 35 35 H 1.08002 * 125.53210 * 179.97438 * 18 17 16 36 36 H 1.08999 * 113.61590 * 139.98039 * 20 13 12 37 37 H 1.09005 * 113.61446 * 270.88194 * 20 13 12 38 38 H 1.08006 * 119.57409 * 180.24781 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7105 1.2305 5 6 1.6875 -2.0659 1.4062 6 6 2.1656 -2.6799 2.5500 7 6 2.8698 -1.9226 3.4803 8 7 3.3554 -2.5266 4.6343 9 6 3.1250 -3.9546 4.8662 10 6 3.7571 -4.3635 6.1981 11 1 3.5641 -3.6464 6.9961 12 6 3.4674 -5.8204 6.5961 13 6 4.9232 -5.8933 7.0862 14 1 5.4150 -6.8381 6.8547 15 7 5.0923 -5.4917 8.4849 16 6 5.2480 -4.2403 8.9506 17 7 5.3659 -4.3032 10.2520 18 6 5.2915 -5.5720 10.6518 19 7 5.1238 -6.3375 9.6057 20 6 5.2350 -4.7719 6.0812 21 7 3.0770 -0.6303 3.2791 22 6 2.6373 -0.0197 2.1952 23 1 -0.3933 0.4417 -0.7650 24 1 1.7923 -0.5139 -0.8900 25 1 1.5616 2.4678 1.2086 26 1 3.5346 1.7702 -0.0322 27 1 1.1371 -2.6284 0.6666 28 1 1.9944 -3.7329 2.7185 29 1 3.8474 -2.0026 5.2857 30 1 3.5749 -4.5312 4.0579 31 1 2.0530 -4.1492 4.8983 32 1 3.2594 -6.4717 5.7471 33 1 2.7323 -5.9169 7.3950 34 1 5.2715 -3.3400 8.3544 35 1 5.3587 -5.9128 11.6745 36 1 5.9269 -4.0220 6.4646 37 1 5.5102 -5.1366 5.0915 38 1 2.8284 1.0350 2.0629 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_16945870_13915762.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:57:35 Heat of formation + Delta-G solvation = 142.745517 kcal Electronic energy + Delta-G solvation = -21703.289397 eV Core-core repulsion = 18357.813144 eV Total energy + Delta-G solvation = -3345.476253 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 288.133 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.26844 -41.49370 -40.34241 -37.94908 -36.58199 -33.76684 -33.36972 -32.25865 -31.70046 -28.89735 -26.97730 -26.23597 -25.13848 -24.62748 -23.11617 -22.60203 -22.16374 -20.75786 -18.75920 -18.47011 -18.15958 -17.90483 -16.92622 -16.58866 -16.48083 -16.15779 -15.93055 -15.81382 -15.45803 -15.15532 -15.02284 -14.71470 -14.21657 -14.16463 -13.87000 -13.75634 -13.51818 -13.33914 -13.01578 -12.41127 -12.16017 -12.07760 -11.83548 -11.59725 -11.17512 -11.10455 -10.91397 -10.83278 -10.69732 -10.61860 -10.17588 -8.77031 -4.94942 0.08209 0.31718 0.55251 1.24099 1.33747 1.65107 1.89403 1.98478 2.02452 2.70245 3.06927 3.25911 3.37553 3.39161 3.51463 3.52461 3.59615 3.79956 3.84744 3.97997 4.05256 4.07578 4.13199 4.27611 4.37106 4.45870 4.51757 4.61887 4.65507 4.66888 4.69794 4.84880 4.89858 4.92923 5.10694 5.20787 5.26881 5.37197 5.41795 5.84057 5.95501 6.44315 6.95746 7.01849 7.03407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.566 6.566 2 C -0.058 4.058 3 Si 0.766 3.234 4 C -0.204 4.204 5 C -0.010 4.010 6 C -0.234 4.234 7 C 0.392 3.608 8 N -0.718 5.718 9 C 0.139 3.861 10 C -0.119 4.119 11 H 0.095 0.905 12 C -0.125 4.125 13 C 0.114 3.886 14 H 0.119 0.881 15 N -0.362 5.362 16 C 0.255 3.745 17 N -0.579 5.579 18 C 0.190 3.810 19 N -0.349 5.349 20 C -0.124 4.124 21 N -0.570 5.570 22 C 0.125 3.875 23 H 0.403 0.597 24 H 0.097 0.903 25 H -0.300 1.300 26 H -0.290 1.290 27 H 0.158 0.842 28 H 0.161 0.839 29 H 0.406 0.594 30 H 0.087 0.913 31 H 0.070 0.930 32 H 0.131 0.869 33 H 0.063 0.937 34 H 0.245 0.755 35 H 0.238 0.762 36 H 0.086 0.914 37 H 0.131 0.869 38 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.244 -1.927 -7.860 8.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.376 6.376 2 C -0.169 4.169 3 Si 0.673 3.327 4 C -0.209 4.209 5 C -0.036 4.036 6 C -0.259 4.259 7 C 0.155 3.845 8 N -0.351 5.351 9 C 0.016 3.984 10 C -0.138 4.138 11 H 0.113 0.887 12 C -0.164 4.164 13 C 0.011 3.989 14 H 0.137 0.863 15 N -0.152 5.152 16 C -0.041 4.041 17 N -0.307 5.307 18 C -0.113 4.113 19 N -0.177 5.177 20 C -0.162 4.162 21 N -0.288 5.288 22 C -0.032 4.032 23 H 0.254 0.746 24 H 0.114 0.886 25 H -0.229 1.229 26 H -0.218 1.218 27 H 0.175 0.825 28 H 0.179 0.821 29 H 0.242 0.758 30 H 0.105 0.895 31 H 0.089 0.911 32 H 0.149 0.851 33 H 0.081 0.919 34 H 0.261 0.739 35 H 0.254 0.746 36 H 0.104 0.896 37 H 0.149 0.851 38 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -0.293 -1.953 -6.071 6.384 hybrid contribution -0.108 -0.373 0.207 0.440 sum -0.401 -2.325 -5.864 6.321 Atomic orbital electron populations 1.86440 1.17374 1.82299 1.51441 1.24481 0.85656 1.10068 0.96718 0.94494 0.77365 0.76110 0.84712 1.20347 1.05497 0.96162 0.98921 1.21509 0.92766 0.93080 0.96213 1.21759 1.05499 1.02530 0.96107 1.18668 0.89857 0.87982 0.87950 1.44579 1.60337 1.10138 1.20021 1.21537 1.00968 0.79061 0.96825 1.22830 0.96189 0.97457 0.97293 0.88660 1.23368 0.94324 0.96434 1.02242 1.22510 1.00072 1.01616 0.74653 0.86327 1.50423 1.52484 1.05033 1.07278 1.26544 0.95145 0.91239 0.91172 1.70593 1.26135 1.22590 1.11404 1.26562 0.97437 0.86730 1.00549 1.78018 1.26870 1.19029 0.93740 1.23552 0.96510 0.96322 0.99800 1.67052 1.27279 1.10618 1.23847 1.22115 0.93859 0.98514 0.88676 0.74591 0.88554 1.22869 1.21788 0.82474 0.82141 0.75795 0.89481 0.91144 0.85070 0.91858 0.73872 0.74644 0.89556 0.85066 0.84534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.57 0.59 12.82 -148.98 -1.91 -1.32 16 2 C -0.06 0.06 2.81 71.24 0.20 0.26 16 3 Si 0.77 -1.14 29.88 68.60 2.05 0.91 16 4 C -0.20 -0.99 5.39 -19.76 -0.11 -1.10 16 5 C -0.01 -0.02 9.83 22.44 0.22 0.20 16 6 C -0.23 -0.16 9.33 22.50 0.21 0.05 16 7 C 0.39 1.55 7.65 133.05 1.02 2.57 16 8 N -0.72 1.91 5.73 -345.09 -1.98 -0.07 16 9 C 0.14 -1.26 4.73 86.38 0.41 -0.85 16 10 C -0.12 1.21 3.34 -10.27 -0.03 1.18 16 11 H 0.10 -0.82 7.02 -2.38 -0.02 -0.84 16 12 C -0.12 1.10 7.44 31.12 0.23 1.33 16 13 C 0.11 -0.70 5.21 45.52 0.24 -0.46 16 14 H 0.12 -0.75 8.14 -2.39 -0.02 -0.77 16 15 N -0.36 -0.42 3.81 -328.93 -1.25 -1.68 16 16 C 0.26 0.22 10.82 180.36 1.95 2.17 16 17 N -0.58 -4.08 11.19 -204.00 -2.28 -6.36 16 18 C 0.19 1.13 13.03 180.77 2.36 3.48 16 19 N -0.35 -2.50 12.70 -61.24 -0.78 -3.28 16 20 C -0.12 1.39 6.89 31.12 0.21 1.60 16 21 N -0.57 -5.44 10.39 -193.26 -2.01 -7.45 16 22 C 0.12 1.10 9.84 84.63 0.83 1.93 16 23 H 0.40 -4.67 8.74 -74.06 -0.65 -5.32 16 24 H 0.10 -0.57 7.96 -2.38 -0.02 -0.59 16 25 H -0.30 -2.04 7.05 99.48 0.70 -1.34 16 26 H -0.29 -1.26 7.11 99.48 0.71 -0.56 16 27 H 0.16 -0.44 8.06 -2.91 -0.02 -0.46 16 28 H 0.16 -0.88 6.71 -2.91 -0.02 -0.90 16 29 H 0.41 -1.29 8.60 -92.71 -0.80 -2.08 16 30 H 0.09 -1.02 7.64 -2.39 -0.02 -1.04 16 31 H 0.07 -0.60 7.93 -2.39 -0.02 -0.62 16 32 H 0.13 -1.72 8.10 -2.38 -0.02 -1.74 16 33 H 0.06 -0.25 8.14 -2.39 -0.02 -0.27 16 34 H 0.25 -1.80 6.75 -2.91 -0.02 -1.82 16 35 H 0.24 -0.11 8.06 -2.91 -0.02 -0.13 16 36 H 0.09 -0.95 7.03 -2.39 -0.02 -0.97 16 37 H 0.13 -1.85 7.90 -2.38 -0.02 -1.87 16 38 H 0.14 1.17 4.87 -2.91 -0.01 1.15 16 Total: 0.00 -26.30 318.64 -0.72 -27.02 By element: Atomic # 1 Polarization: -19.86 SS G_CDS: -0.30 Total: -20.17 kcal Atomic # 6 Polarization: 4.65 SS G_CDS: 7.74 Total: 12.39 kcal Atomic # 7 Polarization: -10.54 SS G_CDS: -8.30 Total: -18.84 kcal Atomic # 8 Polarization: 0.59 SS G_CDS: -1.91 Total: -1.32 kcal Atomic # 14 Polarization: -1.14 SS G_CDS: 2.05 Total: 0.91 kcal Total: -26.30 -0.72 -27.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16945870_13915762.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.769 kcal (2) G-P(sol) polarization free energy of solvation -26.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 142.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds