Wall clock time and date at job start Mon Mar 8 2021 06:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86294 * 109.47551 * 2 1 4 4 C 1.50705 * 109.46855 * 239.99958 * 2 1 3 5 5 C 1.33324 * 125.95217 * 300.00042 * 4 2 1 6 6 N 1.32121 * 114.58429 * 179.97438 * 5 4 2 7 7 C 1.29697 * 116.86194 * 0.02562 * 6 5 4 8 8 N 1.38611 * 124.94795 * 179.97438 * 7 6 5 9 9 C 1.46499 * 119.99912 * 0.02853 * 8 7 6 10 10 C 1.52998 * 109.46882 * 180.02562 * 9 8 7 11 11 H 1.08997 * 112.85474 * 43.80022 * 10 9 8 12 12 C 1.53781 * 113.61406 * 174.99788 * 10 9 8 13 13 C 1.53786 * 87.17350 * 140.02181 * 12 10 9 14 14 H 1.09000 * 113.61138 * 220.06261 * 13 12 10 15 15 N 1.46496 * 113.61518 * 89.15486 * 13 12 10 16 16 C 1.34418 * 126.82526 * 274.71023 * 15 13 12 17 17 N 1.30835 * 108.07828 * 179.89278 * 16 15 13 18 18 C 1.33239 * 109.82749 * 0.38301 * 17 16 15 19 19 N 1.30717 * 108.94793 * 359.76237 * 18 17 16 20 20 C 1.53782 * 113.68747 * 272.53320 * 10 9 8 21 21 S 1.70966 * 110.10081 * 0.24130 * 7 6 5 22 22 H 0.96701 * 113.99555 * 300.00297 * 1 2 3 23 23 H 1.08996 * 109.47240 * 120.00356 * 2 1 3 24 24 H 1.48504 * 110.00327 * 178.68549 * 3 2 1 25 25 H 1.48503 * 109.99984 * 300.00173 * 3 2 1 26 26 H 1.08001 * 122.70995 * 0.02848 * 5 4 2 27 27 H 0.96999 * 119.99511 * 180.02562 * 8 7 6 28 28 H 1.08995 * 109.47324 * 59.99423 * 9 8 7 29 29 H 1.09003 * 109.46872 * 299.99769 * 9 8 7 30 30 H 1.09002 * 113.61445 * 254.61180 * 12 10 9 31 31 H 1.09002 * 113.61408 * 25.42911 * 12 10 9 32 32 H 1.08005 * 125.96668 * 0.04309 * 16 15 13 33 33 H 1.08001 * 125.52631 * 179.72170 * 18 17 16 34 34 H 1.08997 * 113.61668 * 334.55355 * 20 10 9 35 35 H 1.08998 * 113.61674 * 105.37864 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9312 -0.7105 -1.2305 5 6 1.6833 -1.9788 -1.5581 6 7 2.2374 -2.3723 -2.6911 7 6 2.9421 -1.4941 -3.3348 8 7 3.5953 -1.7256 -4.5352 9 6 3.5168 -3.0438 -5.1696 10 6 4.3196 -3.0315 -6.4720 11 1 5.2847 -2.5354 -6.3698 12 6 4.4029 -4.4058 -7.1572 13 6 4.2218 -3.6658 -8.4931 14 1 3.5699 -4.1855 -9.1952 15 7 5.4830 -3.2324 -9.0996 16 6 6.1536 -2.0968 -8.8398 17 7 7.2303 -2.0820 -9.5829 18 6 7.2770 -3.1823 -10.3328 19 7 6.2284 -3.9182 -10.0725 20 6 3.5108 -2.5599 -7.6919 21 16 2.9540 -0.0117 -2.4832 22 1 -0.3933 0.4418 0.7651 23 1 1.7923 -0.5139 0.8899 24 1 3.5347 1.7702 0.0320 25 1 1.5616 2.4678 -1.2085 26 1 1.0778 -2.6317 -0.9470 27 1 4.1044 -1.0147 -4.9552 28 1 2.4754 -3.2812 -5.3864 29 1 3.9284 -3.7959 -4.4965 30 1 5.3753 -4.8873 -7.0531 31 1 3.5737 -5.0683 -6.9091 32 1 5.8568 -1.3312 -8.1381 33 1 8.0546 -3.4263 -11.0414 34 1 2.4369 -2.7174 -7.5913 35 1 3.7618 -1.5509 -8.0187 There are 50 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 50 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_16945870_15704118.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:57:38 Heat of formation + Delta-G solvation = 151.182090 kcal Electronic energy + Delta-G solvation = -20314.539965 eV Core-core repulsion = 17058.581796 eV Total energy + Delta-G solvation = -3255.958170 eV No. of doubly occupied orbitals = 50 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 294.089 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.26119 -40.91999 -40.36207 -37.95151 -36.65612 -33.49364 -32.17894 -31.61061 -29.35574 -27.29384 -26.49343 -25.43967 -24.10040 -23.14475 -22.56940 -21.06068 -20.60047 -19.68095 -18.49725 -18.08983 -17.58818 -17.14685 -16.76223 -16.29827 -16.16865 -15.89287 -15.69912 -15.39716 -15.30681 -14.83957 -14.57863 -14.27689 -14.18039 -13.86034 -13.50560 -13.05329 -12.84325 -12.49728 -12.40235 -12.11875 -12.06014 -11.86566 -11.25762 -11.01703 -10.81216 -10.69866 -10.65122 -10.36346 -10.17473 -8.79919 -5.24081 -0.08201 0.04788 0.57362 0.61894 1.13708 1.20073 1.55159 1.89866 1.97482 1.98593 2.01154 2.81597 2.96815 3.24062 3.27269 3.29243 3.41372 3.67796 3.74941 3.84647 3.94323 3.98605 4.09623 4.26944 4.33910 4.37344 4.38585 4.50535 4.58569 4.66665 4.72642 4.83448 5.04918 5.24262 5.41664 5.71830 5.75591 5.92530 6.55655 6.94151 7.06946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.545 6.545 2 C -0.017 4.017 3 Si 0.668 3.332 4 C -0.260 4.260 5 C 0.123 3.877 6 N -0.546 5.546 7 C 0.328 3.672 8 N -0.693 5.693 9 C 0.147 3.853 10 C -0.131 4.131 11 H 0.100 0.900 12 C -0.131 4.131 13 C 0.129 3.871 14 H 0.118 0.882 15 N -0.363 5.363 16 C 0.252 3.748 17 N -0.543 5.543 18 C 0.199 3.801 19 N -0.315 5.315 20 C -0.137 4.137 21 S 0.070 5.930 22 H 0.383 0.617 23 H 0.082 0.918 24 H -0.242 1.242 25 H -0.239 1.239 26 H 0.179 0.821 27 H 0.414 0.586 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.111 0.889 32 H 0.214 0.786 33 H 0.219 0.781 34 H 0.115 0.885 35 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.953 1.953 3.789 4.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.352 6.352 2 C -0.131 4.131 3 Si 0.568 3.432 4 C -0.382 4.382 5 C -0.028 4.028 6 N -0.272 5.272 7 C -0.042 4.042 8 N -0.333 5.333 9 C 0.021 3.979 10 C -0.150 4.150 11 H 0.118 0.882 12 C -0.170 4.170 13 C 0.025 3.975 14 H 0.136 0.864 15 N -0.153 5.153 16 C -0.045 4.045 17 N -0.270 5.270 18 C -0.103 4.103 19 N -0.142 5.142 20 C -0.176 4.176 21 S 0.318 5.682 22 H 0.231 0.769 23 H 0.100 0.900 24 H -0.166 1.166 25 H -0.163 1.163 26 H 0.196 0.804 27 H 0.251 0.749 28 H 0.093 0.907 29 H 0.091 0.909 30 H 0.101 0.899 31 H 0.129 0.871 32 H 0.230 0.770 33 H 0.236 0.764 34 H 0.133 0.867 35 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.945 2.032 1.999 3.003 hybrid contribution -0.373 -0.702 0.331 0.861 sum -1.318 1.329 2.330 2.989 Atomic orbital electron populations 1.86510 1.17133 1.81758 1.49784 1.23680 0.85483 1.09280 0.94660 0.95109 0.81794 0.78167 0.88164 1.24291 1.12722 0.97751 1.03462 1.21341 0.96772 0.93009 0.91633 1.66475 1.17241 1.33112 1.10391 1.23791 0.95085 0.93250 0.92118 1.43987 1.54975 1.14860 1.19510 1.21383 1.00488 0.83823 0.92186 1.22994 0.99750 0.98581 0.93674 0.88211 1.23347 1.04723 0.96128 0.92792 1.22218 0.82030 0.98330 0.94935 0.86404 1.50243 1.19174 1.15712 1.30206 1.25951 0.89008 0.90833 0.98707 1.70609 1.20588 1.24264 1.11566 1.26119 0.96650 0.88696 0.98866 1.78122 1.07702 1.20737 1.07599 1.23586 1.01228 0.98566 0.94180 1.84111 1.51561 1.14795 1.17715 0.76857 0.90029 1.16603 1.16250 0.80431 0.74912 0.90678 0.90851 0.89882 0.87114 0.76970 0.76428 0.86722 0.89883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.09 12.84 -35.23 -0.45 -0.36 16 2 C -0.02 0.00 2.98 36.01 0.11 0.11 16 3 Si 0.67 -0.70 31.05 -169.99 -5.28 -5.98 16 4 C -0.26 -0.61 5.78 -36.02 -0.21 -0.82 16 5 C 0.12 0.35 11.22 -19.14 -0.21 0.14 16 6 N -0.55 -1.91 10.14 -15.21 -0.15 -2.06 16 7 C 0.33 0.60 8.09 -87.67 -0.71 -0.11 16 8 N -0.69 0.95 5.71 -62.30 -0.36 0.59 16 9 C 0.15 -0.36 5.79 -4.04 -0.02 -0.38 16 10 C -0.13 0.56 3.35 -89.81 -0.30 0.26 16 11 H 0.10 -0.43 7.06 -51.93 -0.37 -0.80 16 12 C -0.13 0.44 7.43 -25.92 -0.19 0.25 16 13 C 0.13 -0.33 5.22 -67.02 -0.35 -0.68 16 14 H 0.12 -0.31 8.14 -51.93 -0.42 -0.73 16 15 N -0.36 -0.15 3.81 -55.23 -0.21 -0.36 16 16 C 0.25 0.01 10.83 -90.66 -0.98 -0.97 16 17 N -0.54 -1.54 11.19 -15.83 -0.18 -1.72 16 18 C 0.20 0.45 13.03 -91.81 -1.20 -0.74 16 19 N -0.31 -0.97 12.70 29.29 0.37 -0.60 16 20 C -0.14 0.64 6.89 -25.82 -0.18 0.47 16 21 S 0.07 0.13 20.57 -107.50 -2.21 -2.08 16 22 H 0.38 -2.04 8.74 45.56 0.40 -1.64 16 23 H 0.08 -0.17 7.96 -51.93 -0.41 -0.59 16 24 H -0.24 -0.31 7.11 56.52 0.40 0.09 16 25 H -0.24 -0.51 7.11 56.52 0.40 -0.11 16 26 H 0.18 0.21 8.06 -52.49 -0.42 -0.21 16 27 H 0.41 -1.47 8.60 -40.82 -0.35 -1.82 16 28 H 0.08 -0.14 7.85 -51.93 -0.41 -0.55 16 29 H 0.07 -0.08 8.14 -51.93 -0.42 -0.51 16 30 H 0.08 -0.14 8.14 -51.93 -0.42 -0.56 16 31 H 0.11 -0.50 8.10 -51.93 -0.42 -0.92 16 32 H 0.21 -0.84 6.77 -52.48 -0.36 -1.20 16 33 H 0.22 -0.21 8.06 -52.49 -0.42 -0.63 16 34 H 0.11 -0.60 7.90 -51.93 -0.41 -1.01 16 35 H 0.08 -0.42 7.02 -51.93 -0.36 -0.79 16 LS Contribution 313.39 15.07 4.72 4.72 Total: 0.00 -10.30 313.39 -12.00 -22.29 By element: Atomic # 1 Polarization: -7.97 SS G_CDS: -4.00 Total: -11.97 kcal Atomic # 6 Polarization: 1.77 SS G_CDS: -4.25 Total: -2.48 kcal Atomic # 7 Polarization: -3.62 SS G_CDS: -0.53 Total: -4.15 kcal Atomic # 8 Polarization: 0.09 SS G_CDS: -0.45 Total: -0.36 kcal Atomic # 14 Polarization: -0.70 SS G_CDS: -5.28 Total: -5.98 kcal Atomic # 16 Polarization: 0.13 SS G_CDS: -2.21 Total: -2.08 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -10.30 -12.00 -22.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16945870_15704118.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.474 kcal (2) G-P(sol) polarization free energy of solvation -10.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 163.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 151.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds