Wall clock time and date at job start Mon Mar 8 2021 06:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86294 * 109.47551 * 2 1 4 4 C 1.50705 * 109.46855 * 239.99958 * 2 1 3 5 5 C 1.33324 * 125.95217 * 300.00042 * 4 2 1 6 6 N 1.32121 * 114.58429 * 179.97438 * 5 4 2 7 7 C 1.29697 * 116.86194 * 0.02562 * 6 5 4 8 8 N 1.38611 * 124.94795 * 179.97438 * 7 6 5 9 9 C 1.46499 * 119.99912 * 0.02853 * 8 7 6 10 10 C 1.52998 * 109.46882 * 180.02562 * 9 8 7 11 11 H 1.08997 * 112.85474 * 43.80022 * 10 9 8 12 12 C 1.53781 * 113.61406 * 174.99788 * 10 9 8 13 13 C 1.53786 * 87.17350 * 140.02181 * 12 10 9 14 14 H 1.09000 * 113.61138 * 220.06261 * 13 12 10 15 15 N 1.46496 * 113.61518 * 89.15486 * 13 12 10 16 16 C 1.34418 * 126.82526 * 274.71023 * 15 13 12 17 17 N 1.30835 * 108.07828 * 179.89278 * 16 15 13 18 18 C 1.33239 * 109.82749 * 0.38301 * 17 16 15 19 19 N 1.30717 * 108.94793 * 359.76237 * 18 17 16 20 20 C 1.53782 * 113.68747 * 272.53320 * 10 9 8 21 21 S 1.70966 * 110.10081 * 0.24130 * 7 6 5 22 22 H 0.96701 * 113.99555 * 300.00297 * 1 2 3 23 23 H 1.08996 * 109.47240 * 120.00356 * 2 1 3 24 24 H 1.48504 * 110.00327 * 178.68549 * 3 2 1 25 25 H 1.48503 * 109.99984 * 300.00173 * 3 2 1 26 26 H 1.08001 * 122.70995 * 0.02848 * 5 4 2 27 27 H 0.96999 * 119.99511 * 180.02562 * 8 7 6 28 28 H 1.08995 * 109.47324 * 59.99423 * 9 8 7 29 29 H 1.09003 * 109.46872 * 299.99769 * 9 8 7 30 30 H 1.09002 * 113.61445 * 254.61180 * 12 10 9 31 31 H 1.09002 * 113.61408 * 25.42911 * 12 10 9 32 32 H 1.08005 * 125.96668 * 0.04309 * 16 15 13 33 33 H 1.08001 * 125.52631 * 179.72170 * 18 17 16 34 34 H 1.08997 * 113.61668 * 334.55355 * 20 10 9 35 35 H 1.08998 * 113.61674 * 105.37864 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9312 -0.7105 -1.2305 5 6 1.6833 -1.9788 -1.5581 6 7 2.2374 -2.3723 -2.6911 7 6 2.9421 -1.4941 -3.3348 8 7 3.5953 -1.7256 -4.5352 9 6 3.5168 -3.0438 -5.1696 10 6 4.3196 -3.0315 -6.4720 11 1 5.2847 -2.5354 -6.3698 12 6 4.4029 -4.4058 -7.1572 13 6 4.2218 -3.6658 -8.4931 14 1 3.5699 -4.1855 -9.1952 15 7 5.4830 -3.2324 -9.0996 16 6 6.1536 -2.0968 -8.8398 17 7 7.2303 -2.0820 -9.5829 18 6 7.2770 -3.1823 -10.3328 19 7 6.2284 -3.9182 -10.0725 20 6 3.5108 -2.5599 -7.6919 21 16 2.9540 -0.0117 -2.4832 22 1 -0.3933 0.4418 0.7651 23 1 1.7923 -0.5139 0.8899 24 1 3.5347 1.7702 0.0320 25 1 1.5616 2.4678 -1.2085 26 1 1.0778 -2.6317 -0.9470 27 1 4.1044 -1.0147 -4.9552 28 1 2.4754 -3.2812 -5.3864 29 1 3.9284 -3.7959 -4.4965 30 1 5.3753 -4.8873 -7.0531 31 1 3.5737 -5.0683 -6.9091 32 1 5.8568 -1.3312 -8.1381 33 1 8.0546 -3.4263 -11.0414 34 1 2.4369 -2.7174 -7.5913 35 1 3.7618 -1.5509 -8.0187 There are 50 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 50 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_16945870_15704118.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:57:37 Heat of formation + Delta-G solvation = 150.970190 kcal Electronic energy + Delta-G solvation = -20314.549154 eV Core-core repulsion = 17058.581796 eV Total energy + Delta-G solvation = -3255.967358 eV No. of doubly occupied orbitals = 50 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 294.089 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.26093 -40.91587 -40.26563 -37.88669 -36.61132 -33.48020 -32.23549 -31.63592 -29.27048 -27.00836 -26.50421 -25.38459 -24.12798 -23.13195 -22.52047 -20.95708 -20.61084 -19.69070 -18.42185 -17.93612 -17.60440 -17.07752 -16.66384 -16.30109 -16.11912 -15.87300 -15.68311 -15.38722 -15.24606 -14.79340 -14.59458 -14.30096 -14.07336 -13.55698 -13.37593 -13.04111 -12.87276 -12.53668 -12.19664 -12.14477 -11.90869 -11.62935 -11.22619 -11.09644 -10.90701 -10.78416 -10.62401 -10.41815 -10.20965 -8.83266 -5.17743 -0.17600 -0.03355 0.51754 0.56617 1.23552 1.24968 1.58124 1.87259 1.90502 1.93130 2.06008 3.04594 3.22165 3.38503 3.45305 3.49315 3.55947 3.72817 3.84581 3.98371 4.07367 4.10110 4.32136 4.49285 4.50036 4.61583 4.63286 4.64207 4.69947 4.81212 4.87450 4.97369 5.11714 5.26615 5.37742 5.70988 5.84880 6.04635 6.86093 6.93461 7.02700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.563 6.563 2 C -0.023 4.023 3 Si 0.754 3.246 4 C -0.275 4.275 5 C 0.110 3.890 6 N -0.572 5.572 7 C 0.327 3.673 8 N -0.681 5.681 9 C 0.151 3.849 10 C -0.118 4.118 11 H 0.105 0.895 12 C -0.127 4.127 13 C 0.117 3.883 14 H 0.117 0.883 15 N -0.362 5.362 16 C 0.256 3.744 17 N -0.578 5.578 18 C 0.190 3.810 19 N -0.351 5.351 20 C -0.123 4.123 21 S 0.054 5.946 22 H 0.405 0.595 23 H 0.104 0.896 24 H -0.274 1.274 25 H -0.285 1.285 26 H 0.188 0.812 27 H 0.425 0.575 28 H 0.073 0.927 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.123 0.877 32 H 0.250 0.750 33 H 0.237 0.763 34 H 0.126 0.874 35 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.550 2.453 4.466 5.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.373 6.373 2 C -0.136 4.136 3 Si 0.658 3.342 4 C -0.397 4.397 5 C -0.040 4.040 6 N -0.299 5.299 7 C -0.044 4.044 8 N -0.322 5.322 9 C 0.026 3.974 10 C -0.137 4.137 11 H 0.124 0.876 12 C -0.166 4.166 13 C 0.014 3.986 14 H 0.135 0.865 15 N -0.153 5.153 16 C -0.040 4.040 17 N -0.306 5.306 18 C -0.112 4.112 19 N -0.178 5.178 20 C -0.161 4.161 21 S 0.302 5.698 22 H 0.257 0.743 23 H 0.122 0.878 24 H -0.200 1.200 25 H -0.211 1.211 26 H 0.204 0.796 27 H 0.264 0.736 28 H 0.092 0.908 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.141 0.859 32 H 0.266 0.734 33 H 0.253 0.747 34 H 0.144 0.856 35 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.562 2.522 2.697 4.010 hybrid contribution -0.204 -0.860 0.101 0.889 sum -1.767 1.662 2.798 3.703 Atomic orbital electron populations 1.86458 1.17033 1.82341 1.51509 1.23838 0.85725 1.09662 0.94423 0.94162 0.78558 0.75844 0.85587 1.24649 1.12825 0.97919 1.04298 1.21559 0.97116 0.93512 0.91840 1.66484 1.18374 1.33908 1.11131 1.23990 0.94855 0.92867 0.92719 1.44111 1.54041 1.15617 1.18428 1.21368 1.00591 0.82935 0.92494 1.22880 0.99826 0.98145 0.92804 0.87648 1.23343 1.04233 0.96598 0.92437 1.22478 0.81222 0.99748 0.95125 0.86491 1.50387 1.19636 1.15601 1.29644 1.26616 0.88111 0.91060 0.98231 1.70598 1.22231 1.24986 1.12777 1.26557 0.96962 0.88581 0.99126 1.78035 1.08549 1.22112 1.09144 1.23574 1.01504 0.98406 0.92623 1.84119 1.52062 1.15303 1.18324 0.74337 0.87795 1.20000 1.21129 0.79569 0.73600 0.90836 0.92100 0.91662 0.85907 0.73442 0.74694 0.85617 0.88699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.62 12.84 -148.98 -1.91 -1.29 16 2 C -0.02 0.02 2.98 71.24 0.21 0.24 16 3 Si 0.75 -1.61 31.05 68.60 2.13 0.52 16 4 C -0.27 -1.36 5.78 24.58 0.14 -1.22 16 5 C 0.11 0.67 11.22 83.54 0.94 1.61 16 6 N -0.57 -4.24 10.14 -202.02 -2.05 -6.29 16 7 C 0.33 1.24 8.09 179.32 1.45 2.69 16 8 N -0.68 2.21 5.71 -351.01 -2.01 0.20 16 9 C 0.15 -0.83 5.79 86.38 0.50 -0.33 16 10 C -0.12 1.12 3.35 -10.27 -0.03 1.08 16 11 H 0.11 -1.07 7.06 -2.39 -0.02 -1.09 16 12 C -0.13 0.90 7.43 31.12 0.23 1.13 16 13 C 0.12 -0.64 5.22 45.58 0.24 -0.41 16 14 H 0.12 -0.61 8.14 -2.39 -0.02 -0.63 16 15 N -0.36 -0.29 3.81 -328.64 -1.25 -1.55 16 16 C 0.26 -0.11 10.83 180.36 1.95 1.85 16 17 N -0.58 -3.43 11.19 -204.00 -2.28 -5.71 16 18 C 0.19 1.03 13.03 180.76 2.36 3.38 16 19 N -0.35 -2.46 12.70 -61.24 -0.78 -3.24 16 20 C -0.12 1.34 6.89 31.18 0.21 1.55 16 21 S 0.05 0.23 20.57 -56.49 -1.16 -0.93 16 22 H 0.40 -4.83 8.74 -74.06 -0.65 -5.48 16 23 H 0.10 -0.58 7.96 -2.39 -0.02 -0.60 16 24 H -0.27 -0.82 7.11 99.48 0.71 -0.11 16 25 H -0.28 -1.53 7.11 99.48 0.71 -0.83 16 26 H 0.19 0.53 8.06 -2.91 -0.02 0.50 16 27 H 0.42 -3.44 8.60 -92.71 -0.80 -4.24 16 28 H 0.07 -0.33 7.85 -2.39 -0.02 -0.35 16 29 H 0.06 -0.14 8.14 -2.39 -0.02 -0.15 16 30 H 0.06 -0.18 8.14 -2.39 -0.02 -0.20 16 31 H 0.12 -1.16 8.10 -2.39 -0.02 -1.18 16 32 H 0.25 -2.42 6.77 -2.91 -0.02 -2.44 16 33 H 0.24 -0.21 8.06 -2.91 -0.02 -0.23 16 34 H 0.13 -1.56 7.90 -2.39 -0.02 -1.58 16 35 H 0.09 -1.19 7.02 -2.39 -0.02 -1.21 16 Total: 0.00 -25.13 313.39 -1.38 -26.51 By element: Atomic # 1 Polarization: -19.54 SS G_CDS: -0.26 Total: -19.81 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: 8.20 Total: 11.59 kcal Atomic # 7 Polarization: -8.22 SS G_CDS: -8.37 Total: -16.58 kcal Atomic # 8 Polarization: 0.62 SS G_CDS: -1.91 Total: -1.29 kcal Atomic # 14 Polarization: -1.61 SS G_CDS: 2.13 Total: 0.52 kcal Atomic # 16 Polarization: 0.23 SS G_CDS: -1.16 Total: -0.93 kcal Total: -25.13 -1.38 -26.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16945870_15704118.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.475 kcal (2) G-P(sol) polarization free energy of solvation -25.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 152.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 150.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds