Wall clock time and date at job start Mon Mar 8 2021 06:57:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.33326 * 125.95299 * 2 1 4 4 C 1.50705 * 122.70728 * 359.96306 * 3 2 1 5 5 O 1.42894 * 109.47171 * 329.73673 * 4 3 2 6 6 Si 1.86298 * 109.46780 * 209.73114 * 4 3 2 7 7 N 1.32115 * 114.58077 * 179.69517 * 3 2 1 8 8 C 1.29689 * 116.86612 * 0.27409 * 7 3 2 9 9 N 1.38603 * 124.95320 * 180.02562 * 8 7 3 10 10 C 1.46496 * 120.00361 * 179.97438 * 9 8 7 11 11 C 1.53004 * 109.47479 * 179.97438 * 10 9 8 12 12 H 1.08995 * 112.84882 * 43.79906 * 11 10 9 13 13 C 1.53780 * 113.61770 * 175.00010 * 11 10 9 14 14 C 1.53774 * 87.08341 * 139.97737 * 13 11 10 15 15 H 1.08997 * 113.61951 * 219.93543 * 14 13 11 16 16 N 1.46503 * 113.61594 * 89.11392 * 14 13 11 17 17 C 1.34428 * 126.82290 * 275.00180 * 16 14 13 18 18 N 1.30829 * 108.07580 * 179.97438 * 17 16 14 19 19 C 1.33243 * 109.83043 * 359.97438 * 18 17 16 20 20 N 1.30712 * 108.94577 * 359.75620 * 19 18 17 21 21 C 1.53781 * 113.60982 * 272.49356 * 11 10 9 22 22 S 1.70971 * 110.09981 * 359.97438 * 8 7 3 23 23 H 1.09008 * 109.46926 * 89.99776 * 1 2 3 24 24 H 1.08992 * 109.47471 * 210.00278 * 1 2 3 25 25 H 1.08998 * 109.46609 * 330.00236 * 1 2 3 26 26 H 1.09004 * 109.46779 * 89.73996 * 4 3 2 27 27 H 0.96709 * 113.99337 * 180.02562 * 5 4 3 28 28 H 1.48506 * 109.99834 * 60.00830 * 6 4 3 29 29 H 1.48502 * 110.00011 * 181.32094 * 6 4 3 30 30 H 0.97000 * 120.00023 * 359.97438 * 9 8 7 31 31 H 1.08999 * 109.46820 * 299.99234 * 10 9 8 32 32 H 1.08997 * 109.47288 * 59.98978 * 10 9 8 33 33 H 1.09001 * 113.61109 * 254.52800 * 13 11 10 34 34 H 1.09001 * 113.61351 * 25.33878 * 13 11 10 35 35 H 1.07995 * 125.96360 * 359.97438 * 17 16 14 36 36 H 1.07998 * 125.52560 * 179.97438 * 19 18 17 37 37 H 1.09000 * 113.62075 * 334.56665 * 21 11 10 38 38 H 1.09005 * 113.61184 * 105.46895 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2899 1.0793 0.0000 4 6 1.7414 2.4830 -0.0008 5 8 0.4846 2.5030 -0.6804 6 14 2.9366 3.6160 -0.8717 7 7 3.5851 0.8188 0.0064 8 6 3.9315 -0.4310 0.0063 9 7 5.2384 -0.8927 0.0129 10 6 5.5065 -2.3329 0.0126 11 6 7.0179 -2.5704 0.0200 12 1 7.5450 -1.9208 0.7186 13 6 7.4080 -4.0528 0.1430 14 6 8.5174 -3.7648 -0.8822 15 1 8.6522 -4.5604 -1.6149 16 7 9.7783 -3.3302 -0.2760 17 6 10.1111 -2.0776 0.0808 18 7 11.3181 -2.1062 0.5848 19 6 11.7859 -3.3536 0.5671 20 7 10.8769 -4.1405 0.0540 21 6 7.6430 -2.6038 -1.3846 22 16 2.5413 -1.4261 -0.0019 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3634 -0.8899 0.5138 25 1 -0.3632 0.8900 0.5138 26 1 1.6044 2.8201 1.0267 27 1 0.0727 3.3770 -0.7198 28 1 3.1321 3.1672 -2.2738 29 1 2.4225 5.0091 -0.8515 30 1 5.9755 -0.2622 0.0178 31 1 5.0630 -2.7852 0.8996 32 1 5.0726 -2.7831 -0.8803 33 1 7.7847 -4.3248 1.1291 34 1 6.6421 -4.7376 -0.2211 35 1 9.4905 -1.2007 -0.0293 36 1 12.7571 -3.6648 0.9225 37 1 6.9421 -2.8923 -2.1679 38 1 8.2095 -1.7059 -1.6319 There are 53 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 53 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_16945870_15704122.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:57:40 Heat of formation + Delta-G solvation = 149.490682 kcal Electronic energy + Delta-G solvation = -22311.863128 eV Core-core repulsion = 18900.293994 eV Total energy + Delta-G solvation = -3411.569134 eV No. of doubly occupied orbitals = 53 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 308.105 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.21415 -41.00754 -40.34881 -37.98175 -36.63350 -33.57243 -32.71837 -32.11353 -29.85853 -28.33165 -26.93767 -25.68649 -25.03601 -23.99727 -23.09686 -22.48706 -20.88586 -20.13364 -19.33678 -18.22001 -17.88311 -17.33751 -17.01541 -16.65204 -16.30995 -16.05691 -16.01707 -15.68663 -15.28973 -15.23721 -14.81887 -14.21733 -14.12725 -13.91369 -13.79343 -13.48468 -13.41517 -13.22571 -12.99658 -12.93955 -12.43428 -12.16689 -11.82508 -11.72565 -11.56922 -11.07429 -11.04683 -10.85960 -10.65814 -10.57315 -10.43426 -9.97235 -8.58596 -4.77861 0.01724 0.17678 0.61332 0.75740 1.29178 1.29372 1.62598 1.86934 1.89499 1.95218 2.05613 3.05270 3.15317 3.29504 3.43927 3.52392 3.63453 3.89867 3.91137 4.10718 4.12611 4.18937 4.34631 4.36931 4.42208 4.50296 4.61597 4.68285 4.72193 4.82688 4.86372 4.91432 4.93029 5.09411 5.15380 5.31104 5.31851 5.42012 5.64539 5.90290 6.37758 6.62826 6.93164 7.07610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 C -0.257 4.257 3 C 0.089 3.911 4 C -0.044 4.044 5 O -0.546 6.546 6 Si 0.776 3.224 7 N -0.561 5.561 8 C 0.314 3.686 9 N -0.683 5.683 10 C 0.132 3.868 11 C -0.114 4.114 12 H 0.106 0.894 13 C -0.127 4.127 14 C 0.114 3.886 15 H 0.116 0.884 16 N -0.362 5.362 17 C 0.256 3.744 18 N -0.579 5.579 19 C 0.190 3.810 20 N -0.351 5.351 21 C -0.125 4.125 22 S 0.116 5.884 23 H 0.064 0.936 24 H 0.065 0.935 25 H 0.086 0.914 26 H 0.100 0.900 27 H 0.398 0.602 28 H -0.319 1.319 29 H -0.277 1.277 30 H 0.419 0.581 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.065 0.935 34 H 0.128 0.872 35 H 0.250 0.750 36 H 0.236 0.764 37 H 0.129 0.871 38 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.179 -1.114 0.548 2.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.380 4.380 3 C -0.040 4.040 4 C -0.156 4.156 5 O -0.356 6.356 6 Si 0.682 3.318 7 N -0.289 5.289 8 C -0.058 4.058 9 N -0.324 5.324 10 C 0.009 3.991 11 C -0.133 4.133 12 H 0.124 0.876 13 C -0.166 4.166 14 C 0.012 3.988 15 H 0.134 0.866 16 N -0.153 5.153 17 C -0.039 4.039 18 N -0.307 5.307 19 C -0.113 4.113 20 N -0.179 5.179 21 C -0.163 4.163 22 S 0.364 5.636 23 H 0.083 0.917 24 H 0.083 0.917 25 H 0.104 0.896 26 H 0.118 0.882 27 H 0.249 0.751 28 H -0.248 1.248 29 H -0.204 1.204 30 H 0.258 0.742 31 H 0.092 0.908 32 H 0.102 0.898 33 H 0.084 0.916 34 H 0.146 0.854 35 H 0.266 0.734 36 H 0.252 0.748 37 H 0.147 0.853 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.426 -2.626 -0.167 2.993 hybrid contribution -1.043 1.339 -0.217 1.711 sum -2.468 -1.287 -0.384 2.810 Atomic orbital electron populations 1.20054 0.86009 1.02794 1.02362 1.25337 1.02154 0.93333 1.17171 1.19091 0.86915 0.95822 1.02194 1.24040 0.92241 0.96979 1.02332 1.86543 1.33232 1.36650 1.79185 0.93048 0.86517 0.73584 0.78627 1.65627 1.16818 1.17443 1.29016 1.23448 0.92912 0.91145 0.98263 1.44001 1.00829 1.08009 1.79602 1.21661 0.95996 0.78374 1.03119 1.22805 0.94027 0.98021 0.98403 0.87626 1.23370 0.97154 0.96679 0.99356 1.22476 0.78687 1.00859 0.96795 0.86579 1.50408 1.13298 1.06004 1.45568 1.26622 0.93312 0.90805 0.93206 1.70596 1.11027 1.23463 1.25589 1.26535 1.00740 0.86682 0.97342 1.78022 0.96731 1.19864 1.23237 1.23570 0.97733 0.97420 0.97574 1.83760 0.96046 1.09676 1.74105 0.91727 0.91651 0.89577 0.88189 0.75091 1.24789 1.20352 0.74168 0.90791 0.89834 0.91604 0.85410 0.73429 0.74821 0.85310 0.89010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.12 8.96 71.24 0.64 0.51 16 2 C -0.26 -1.30 6.50 24.58 0.16 -1.14 16 3 C 0.09 0.53 5.95 41.41 0.25 0.77 16 4 C -0.04 -0.09 2.81 71.24 0.20 0.11 16 5 O -0.55 -0.68 9.88 -148.98 -1.47 -2.15 16 6 Si 0.78 2.01 32.08 68.60 2.20 4.21 16 7 N -0.56 -2.87 8.95 -189.86 -1.70 -4.57 16 8 C 0.31 0.37 8.24 179.32 1.48 1.85 16 9 N -0.68 4.04 5.71 -351.01 -2.01 2.03 16 10 C 0.13 -1.39 5.37 86.38 0.46 -0.93 16 11 C -0.11 1.42 3.35 -10.27 -0.03 1.38 16 12 H 0.11 -1.29 7.03 -2.39 -0.02 -1.31 16 13 C -0.13 1.29 7.44 31.12 0.23 1.52 16 14 C 0.11 -0.85 5.21 45.51 0.24 -0.62 16 15 H 0.12 -0.83 8.14 -2.39 -0.02 -0.85 16 16 N -0.36 0.17 3.81 -328.95 -1.25 -1.09 16 17 C 0.26 -0.33 10.82 180.36 1.95 1.62 16 18 N -0.58 -3.06 11.19 -204.01 -2.28 -5.34 16 19 C 0.19 0.89 13.03 180.76 2.36 3.25 16 20 N -0.35 -2.10 12.70 -61.25 -0.78 -2.88 16 21 C -0.12 1.62 6.89 31.12 0.21 1.83 16 22 S 0.12 0.10 22.32 -56.49 -1.26 -1.16 16 23 H 0.06 0.21 8.14 -2.38 -0.02 0.19 16 24 H 0.06 0.01 8.14 -2.39 -0.02 -0.01 16 25 H 0.09 0.16 6.63 -2.39 -0.02 0.14 16 26 H 0.10 -0.19 7.96 -2.38 -0.02 -0.21 16 27 H 0.40 -2.80 8.74 -74.05 -0.65 -3.45 16 28 H -0.32 -3.87 7.11 99.48 0.71 -3.17 16 29 H -0.28 -1.16 7.11 99.48 0.71 -0.45 16 30 H 0.42 -3.43 8.60 -92.71 -0.80 -4.22 16 31 H 0.07 -0.73 8.14 -2.39 -0.02 -0.74 16 32 H 0.08 -0.98 7.84 -2.39 -0.02 -1.00 16 33 H 0.07 -0.37 8.14 -2.39 -0.02 -0.39 16 34 H 0.13 -1.74 8.10 -2.39 -0.02 -1.76 16 35 H 0.25 -2.58 6.75 -2.91 -0.02 -2.60 16 36 H 0.24 -0.33 8.06 -2.91 -0.02 -0.35 16 37 H 0.13 -1.96 7.90 -2.39 -0.02 -1.98 16 38 H 0.09 -1.24 7.03 -2.38 -0.02 -1.26 16 Total: 0.00 -23.50 330.77 -0.71 -24.20 By element: Atomic # 1 Polarization: -23.13 SS G_CDS: -0.30 Total: -23.42 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: 8.14 Total: 10.17 kcal Atomic # 7 Polarization: -3.83 SS G_CDS: -8.02 Total: -11.85 kcal Atomic # 8 Polarization: -0.68 SS G_CDS: -1.47 Total: -2.15 kcal Atomic # 14 Polarization: 2.01 SS G_CDS: 2.20 Total: 4.21 kcal Atomic # 16 Polarization: 0.10 SS G_CDS: -1.26 Total: -1.16 kcal Total: -23.50 -0.71 -24.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16945870_15704122.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.691 kcal (2) G-P(sol) polarization free energy of solvation -23.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 150.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 149.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds