Wall clock time and date at job start Mon Mar 8 2021 06:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42908 * 1 3 3 Si 1.86293 * 109.47253 * 2 1 4 4 C 1.50695 * 109.46947 * 120.00370 * 2 1 3 5 5 C 1.37986 * 120.32752 * 244.99816 * 4 2 1 6 6 N 1.32001 * 120.90266 * 179.97438 * 5 4 2 7 7 C 1.32335 * 121.64781 * 359.97438 * 6 5 4 8 8 N 1.39152 * 119.72050 * 179.97438 * 7 6 5 9 9 C 1.46497 * 119.99589 * 359.97438 * 8 7 6 10 10 C 1.53009 * 109.46881 * 180.02562 * 9 8 7 11 11 H 1.09003 * 112.90552 * 316.25803 * 10 9 8 12 12 C 1.53778 * 113.60997 * 87.50625 * 10 9 8 13 13 C 1.53791 * 87.07707 * 139.98248 * 12 10 9 14 14 H 1.09005 * 113.68776 * 220.00912 * 13 12 10 15 15 N 1.46494 * 113.61510 * 89.11722 * 13 12 10 16 16 C 1.34438 * 126.82245 * 347.50210 * 15 13 12 17 17 N 1.30831 * 108.07816 * 180.20890 * 16 15 13 18 18 C 1.33251 * 109.82578 * 359.59820 * 17 16 15 19 19 N 1.30712 * 108.94547 * 0.40841 * 18 17 16 20 20 C 1.53778 * 113.61364 * 185.00629 * 10 9 8 21 21 C 1.39349 * 120.56310 * 0.26028 * 7 6 5 22 22 F 1.35098 * 120.47029 * 179.72031 * 21 7 6 23 23 C 1.38444 * 119.05472 * 359.49082 * 21 7 6 24 24 H 0.96701 * 113.99320 * 299.99944 * 1 2 3 25 25 H 1.08999 * 109.46696 * 240.00123 * 2 1 3 26 26 H 1.48497 * 110.00076 * 178.68091 * 3 2 1 27 27 H 1.48497 * 110.00252 * 300.00265 * 3 2 1 28 28 H 1.07999 * 119.54794 * 359.97438 * 5 4 2 29 29 H 0.97002 * 120.00063 * 180.02562 * 8 7 6 30 30 H 1.09003 * 109.46945 * 60.00720 * 9 8 7 31 31 H 1.08995 * 109.47859 * 300.00292 * 9 8 7 32 32 H 1.08996 * 113.61613 * 25.43743 * 12 10 9 33 33 H 1.08997 * 113.61659 * 254.52674 * 12 10 9 34 34 H 1.08002 * 125.95849 * 359.93825 * 16 15 13 35 35 H 1.07996 * 125.52171 * 180.12701 * 18 17 16 36 36 H 1.08995 * 113.61556 * 105.46970 * 20 10 9 37 37 H 1.09004 * 113.61485 * 334.56632 * 20 10 9 38 38 H 1.08001 * 120.75822 * 180.24362 * 23 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7105 1.2304 5 6 2.6382 -0.0203 2.1937 6 7 3.0830 -0.6311 3.2761 7 6 2.8712 -1.9211 3.4819 8 7 3.3588 -2.5246 4.6370 9 6 4.1035 -1.7323 5.6188 10 6 4.5237 -2.6294 6.7850 11 1 3.7266 -3.2948 7.1169 12 6 5.8677 -3.3421 6.5606 13 6 6.1752 -3.0589 8.0406 14 1 7.2090 -2.7667 8.2249 15 7 5.7110 -4.1110 8.9481 16 6 4.8761 -5.1217 8.6500 17 7 4.7064 -5.8401 9.7302 18 6 5.4203 -5.3267 10.7313 19 7 6.0502 -4.2647 10.3023 20 6 5.2084 -1.8680 7.9322 21 6 2.1691 -2.6816 2.5489 22 9 1.9588 -3.9996 2.7582 23 6 1.6861 -2.0663 1.4066 24 1 -0.3932 0.4417 0.7651 25 1 1.7923 -0.5138 -0.8900 26 1 3.5347 1.7702 0.0321 27 1 1.5616 2.4679 -1.2084 28 1 2.8301 1.0341 2.0604 29 1 3.2062 -3.4699 4.7918 30 1 3.4710 -0.9259 5.9899 31 1 4.9911 -1.3104 5.1474 32 1 6.5290 -2.8195 5.8695 33 1 5.7665 -4.4028 6.3309 34 1 4.4212 -5.3057 7.6880 35 1 5.4670 -5.7212 11.7355 36 1 4.5749 -1.7386 8.8097 37 1 5.6895 -0.9424 7.6160 38 1 1.1350 -2.6286 0.6673 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_16945870_17656566.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:57:42 Heat of formation + Delta-G solvation = 97.935580 kcal Electronic energy + Delta-G solvation = -24141.969538 eV Core-core repulsion = 20325.096205 eV Total energy + Delta-G solvation = -3816.873334 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 306.123 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.94017 -43.23814 -41.40255 -40.31814 -38.07702 -36.50013 -33.60630 -33.15925 -32.23589 -31.62930 -28.87542 -26.95562 -26.33031 -25.48246 -24.20195 -23.06913 -22.87461 -22.33002 -20.76509 -19.31527 -18.46829 -18.31555 -17.89517 -17.56384 -17.05906 -16.89647 -16.43557 -16.12944 -16.05243 -15.89750 -15.70356 -15.38420 -15.20287 -15.15331 -14.43933 -14.31247 -14.05262 -13.94161 -13.51195 -13.50427 -13.26993 -12.96898 -12.54720 -12.15321 -12.09741 -11.85655 -11.57239 -11.20911 -11.07626 -10.88530 -10.71003 -10.69068 -10.58689 -10.40030 -8.73695 -4.96193 -0.07047 0.11917 0.58516 1.26482 1.33180 1.67868 1.92287 1.99033 2.01940 2.56135 3.02868 3.11150 3.25206 3.32652 3.40587 3.51199 3.55307 3.68415 3.70347 3.87267 3.87558 4.03739 4.10891 4.19003 4.37151 4.45440 4.49831 4.58611 4.66882 4.68982 4.74039 4.79358 4.90558 4.95522 5.00599 5.14923 5.29505 5.37890 5.40659 5.87170 5.97733 6.19951 6.80214 6.97160 7.04732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.557 6.557 2 C -0.060 4.060 3 Si 0.775 3.225 4 C -0.208 4.208 5 C 0.149 3.851 6 N -0.525 5.525 7 C 0.383 3.617 8 N -0.713 5.713 9 C 0.150 3.850 10 C -0.120 4.120 11 H 0.099 0.901 12 C -0.124 4.124 13 C 0.115 3.885 14 H 0.117 0.883 15 N -0.362 5.362 16 C 0.256 3.744 17 N -0.579 5.579 18 C 0.190 3.810 19 N -0.350 5.350 20 C -0.125 4.125 21 C -0.038 4.038 22 F -0.141 7.141 23 C -0.043 4.043 24 H 0.396 0.604 25 H 0.110 0.890 26 H -0.279 1.279 27 H -0.299 1.299 28 H 0.185 0.815 29 H 0.417 0.583 30 H 0.065 0.935 31 H 0.076 0.924 32 H 0.127 0.873 33 H 0.089 0.911 34 H 0.248 0.752 35 H 0.237 0.763 36 H 0.063 0.937 37 H 0.126 0.874 38 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.467 3.934 -1.194 4.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.365 6.365 2 C -0.170 4.170 3 Si 0.680 3.320 4 C -0.213 4.213 5 C -0.007 4.007 6 N -0.243 5.243 7 C 0.144 3.856 8 N -0.346 5.346 9 C 0.027 3.973 10 C -0.139 4.139 11 H 0.117 0.883 12 C -0.162 4.162 13 C 0.012 3.988 14 H 0.135 0.865 15 N -0.152 5.152 16 C -0.040 4.040 17 N -0.307 5.307 18 C -0.113 4.113 19 N -0.178 5.178 20 C -0.164 4.164 21 C -0.064 4.064 22 F -0.120 7.120 23 C -0.070 4.070 24 H 0.246 0.754 25 H 0.127 0.873 26 H -0.206 1.206 27 H -0.227 1.227 28 H 0.201 0.799 29 H 0.255 0.745 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.145 0.855 33 H 0.108 0.892 34 H 0.263 0.737 35 H 0.253 0.747 36 H 0.082 0.918 37 H 0.144 0.856 38 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 1.902 4.956 -0.923 5.388 hybrid contribution -0.591 -1.883 -0.808 2.133 sum 1.311 3.073 -1.731 3.763 Atomic orbital electron populations 1.86486 1.17302 1.82152 1.50542 1.24997 0.85188 1.10669 0.96167 0.93842 0.78030 0.74725 0.85384 1.20972 1.05675 0.94313 1.00383 1.22675 0.90885 1.00141 0.87032 1.67347 1.25583 1.07344 1.24008 1.18559 0.90598 0.89053 0.87405 1.44599 1.59069 1.12476 1.18485 1.21280 0.95988 0.93120 0.86950 1.22882 0.97435 0.98362 0.95208 0.88261 1.23544 0.97063 1.03260 0.92322 1.22487 1.00210 0.86961 0.89096 0.86537 1.50407 1.34844 1.22396 1.07575 1.26581 0.91557 0.85349 1.00543 1.70600 1.27633 1.32263 1.00169 1.26558 0.92584 0.90965 1.01175 1.78019 1.25911 1.22056 0.91778 1.23342 0.97276 0.97748 0.98061 1.18139 1.09756 0.79368 0.99150 1.91468 1.93892 1.31568 1.95040 1.21437 0.95417 0.95004 0.95095 0.75422 0.87286 1.20589 1.22734 0.79884 0.74536 0.91673 0.90593 0.85461 0.89216 0.73658 0.74681 0.91778 0.85577 0.83134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 1.28 12.84 -148.98 -1.91 -0.63 16 2 C -0.06 0.21 2.82 71.23 0.20 0.41 16 3 Si 0.77 -4.17 29.83 68.60 2.05 -2.12 16 4 C -0.21 0.49 5.36 -19.77 -0.11 0.38 16 5 C 0.15 -0.43 9.84 84.61 0.83 0.40 16 6 N -0.53 -0.08 9.57 -193.03 -1.85 -1.93 16 7 C 0.38 0.09 7.49 133.08 1.00 1.08 16 8 N -0.71 3.16 5.71 -344.79 -1.97 1.19 16 9 C 0.15 -1.11 5.53 86.38 0.48 -0.63 16 10 C -0.12 1.20 3.35 -10.27 -0.03 1.16 16 11 H 0.10 -0.95 7.02 -2.39 -0.02 -0.97 16 12 C -0.12 1.37 6.89 31.12 0.21 1.58 16 13 C 0.12 -0.67 5.21 45.52 0.24 -0.43 16 14 H 0.12 -0.67 8.14 -2.38 -0.02 -0.69 16 15 N -0.36 -0.31 3.81 -328.92 -1.25 -1.56 16 16 C 0.26 0.01 10.82 180.36 1.95 1.96 16 17 N -0.58 -3.63 11.19 -203.99 -2.28 -5.91 16 18 C 0.19 1.04 13.03 180.76 2.36 3.39 16 19 N -0.35 -2.42 12.70 -61.24 -0.78 -3.20 16 20 C -0.13 1.00 7.44 31.12 0.23 1.23 16 21 C -0.04 -0.06 7.35 22.59 0.17 0.11 16 22 F -0.14 -0.41 16.65 44.97 0.75 0.34 16 23 C -0.04 0.00 9.82 22.48 0.22 0.22 16 24 H 0.40 -4.06 8.70 -74.06 -0.64 -4.71 16 25 H 0.11 -0.27 7.96 -2.39 -0.02 -0.29 16 26 H -0.28 0.30 7.11 99.48 0.71 1.00 16 27 H -0.30 -0.83 7.11 99.48 0.71 -0.12 16 28 H 0.18 -1.52 4.90 -2.91 -0.01 -1.53 16 29 H 0.42 -2.76 7.94 -92.71 -0.74 -3.50 16 30 H 0.06 -0.34 8.14 -2.39 -0.02 -0.36 16 31 H 0.08 -0.56 7.84 -2.39 -0.02 -0.58 16 32 H 0.13 -1.67 7.89 -2.39 -0.02 -1.69 16 33 H 0.09 -1.06 7.03 -2.39 -0.02 -1.08 16 34 H 0.25 -2.16 6.75 -2.91 -0.02 -2.17 16 35 H 0.24 -0.21 8.06 -2.91 -0.02 -0.23 16 36 H 0.06 -0.23 8.14 -2.39 -0.02 -0.25 16 37 H 0.13 -1.40 8.10 -2.39 -0.02 -1.42 16 38 H 0.15 -0.15 8.06 -2.91 -0.02 -0.17 16 Total: 0.00 -22.01 326.15 0.28 -21.73 By element: Atomic # 1 Polarization: -18.55 SS G_CDS: -0.22 Total: -18.76 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: 7.74 Total: 10.87 kcal Atomic # 7 Polarization: -3.29 SS G_CDS: -8.13 Total: -11.42 kcal Atomic # 8 Polarization: 1.28 SS G_CDS: -1.91 Total: -0.63 kcal Atomic # 9 Polarization: -0.41 SS G_CDS: 0.75 Total: 0.34 kcal Atomic # 14 Polarization: -4.17 SS G_CDS: 2.05 Total: -2.12 kcal Total: -22.01 0.28 -21.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16945870_17656566.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.668 kcal (2) G-P(sol) polarization free energy of solvation -22.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds