Wall clock time and date at job start Mon Mar 8 2021 06:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86295 * 109.47433 * 2 1 4 4 C 1.50704 * 109.47201 * 120.00309 * 2 1 3 5 5 C 1.38599 * 120.72153 * 64.99846 * 4 2 1 6 6 N 1.32279 * 119.19432 * 180.02562 * 5 4 2 7 7 C 1.32496 * 120.74193 * 0.02562 * 6 5 4 8 8 N 1.38410 * 119.21316 * 179.97438 * 7 6 5 9 9 C 1.46499 * 119.99501 * 179.97438 * 8 7 6 10 10 C 1.53000 * 109.46974 * 179.97438 * 9 8 7 11 11 H 1.09002 * 112.84949 * 45.33483 * 10 9 8 12 12 C 1.53781 * 113.61707 * 176.53042 * 10 9 8 13 13 C 1.53777 * 87.08336 * 140.06298 * 12 10 9 14 14 H 1.08998 * 113.61354 * 219.93545 * 13 12 10 15 15 N 1.46500 * 113.61088 * 89.11940 * 13 12 10 16 16 C 1.35317 * 125.86628 * 275.00023 * 15 13 12 17 17 C 1.35349 * 106.17705 * 180.02562 * 16 15 13 18 18 N 1.33775 * 106.49348 * 359.97438 * 17 16 15 19 19 N 1.28638 * 108.88732 * 359.73483 * 18 17 16 20 20 C 1.53775 * 87.07992 * 334.56762 * 13 12 10 21 21 N 1.32490 * 121.56427 * 0.27376 * 7 6 5 22 22 C 1.32273 * 120.74194 * 359.44289 * 21 7 6 23 23 H 0.96703 * 113.99529 * 299.99817 * 1 2 3 24 24 H 1.08998 * 109.47378 * 239.99823 * 2 1 3 25 25 H 1.48506 * 110.00367 * 178.68108 * 3 2 1 26 26 H 1.48501 * 109.99963 * 300.00152 * 3 2 1 27 27 H 1.07999 * 120.40216 * 359.97438 * 5 4 2 28 28 H 0.96991 * 120.00196 * 359.97438 * 8 7 6 29 29 H 1.09001 * 109.46950 * 60.00213 * 9 8 7 30 30 H 1.08992 * 109.47264 * 300.00108 * 9 8 7 31 31 H 1.08997 * 113.61673 * 254.61847 * 12 10 9 32 32 H 1.09009 * 113.61202 * 25.43077 * 12 10 9 33 33 H 1.08003 * 126.91091 * 359.97250 * 16 15 13 34 34 H 1.08001 * 126.75622 * 179.97438 * 17 16 15 35 35 H 1.08993 * 113.61636 * 270.87622 * 20 13 12 36 36 H 1.09008 * 113.61006 * 139.97865 * 20 13 12 37 37 H 1.08003 * 120.40273 * 180.29920 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7105 1.2305 5 6 1.6926 -2.0634 1.4140 6 7 2.1470 -2.6565 2.5055 7 6 2.8225 -1.9721 3.4170 8 7 3.2830 -2.6244 4.5475 9 6 4.0322 -1.8844 5.5660 10 6 4.4207 -2.8323 6.7024 11 1 4.8192 -3.7815 6.3443 12 6 5.2867 -2.1708 7.7875 13 6 4.4649 -2.9649 8.8165 14 1 4.2239 -2.3967 9.7149 15 7 5.0168 -4.2894 9.1120 16 6 4.7898 -5.4191 8.4026 17 6 5.4880 -6.3997 9.0215 18 7 6.1003 -5.8293 10.0652 19 7 5.8056 -4.5773 10.0875 20 6 3.3318 -2.9874 7.7772 21 7 3.0626 -0.6769 3.2747 22 6 2.6409 -0.0247 2.2039 23 1 -0.3933 0.4417 0.7651 24 1 1.7924 -0.5138 -0.8899 25 1 3.5347 1.7702 0.0321 26 1 1.5615 2.4678 -1.2085 27 1 1.1416 -2.6263 0.6751 28 1 3.1096 -3.5714 4.6655 29 1 3.4116 -1.0799 5.9606 30 1 4.9329 -1.4631 5.1198 31 1 6.3359 -2.4632 7.7472 32 1 5.1505 -1.0915 7.8571 33 1 4.1745 -5.5186 7.5206 34 1 5.5404 -7.4383 8.7301 35 1 2.6601 -2.1318 7.8449 36 1 2.8029 -3.9393 7.7285 37 1 2.8438 1.0300 2.0912 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_16945872_12175864.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:57:45 Heat of formation + Delta-G solvation = 165.529234 kcal Electronic energy + Delta-G solvation = -21895.985315 eV Core-core repulsion = 18486.071127 eV Total energy + Delta-G solvation = -3409.914188 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.33458 -42.07750 -40.48411 -38.12072 -36.64732 -34.72932 -34.12560 -32.49393 -32.01421 -29.18744 -26.99199 -26.44210 -25.94638 -24.79094 -23.59068 -23.09232 -22.51616 -20.87533 -19.38460 -18.70312 -18.14000 -17.97381 -17.37531 -16.72018 -16.42403 -16.30965 -16.02881 -15.81248 -15.69635 -15.32906 -14.99551 -14.96093 -14.54503 -14.07840 -13.94992 -13.58656 -13.30624 -13.12104 -12.75397 -12.26271 -12.17951 -12.02457 -11.89431 -11.85189 -11.78022 -11.58766 -11.25438 -10.95478 -10.53489 -10.38446 -10.03826 -9.08615 -4.99011 0.06564 0.14091 0.60344 1.33207 1.37039 1.57429 1.65354 1.82854 2.00661 2.81080 3.02863 3.15409 3.24306 3.47163 3.56273 3.60294 3.67205 3.70224 3.74516 3.87296 4.08713 4.16388 4.24874 4.27027 4.30399 4.44012 4.57448 4.62626 4.66302 4.75432 4.77005 4.79042 4.88289 4.96393 5.14213 5.23006 5.26865 5.70325 5.76494 6.04874 6.40655 6.80295 7.28112 7.48723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.555 6.555 2 C -0.047 4.047 3 Si 0.769 3.231 4 C -0.289 4.289 5 C 0.212 3.788 6 N -0.590 5.590 7 C 0.550 3.450 8 N -0.690 5.690 9 C 0.154 3.846 10 C -0.120 4.120 11 H 0.102 0.898 12 C -0.123 4.123 13 C 0.095 3.905 14 H 0.131 0.869 15 N -0.267 5.267 16 C -0.036 4.036 17 C -0.067 4.067 18 N -0.318 5.318 19 N -0.127 5.127 20 C -0.120 4.120 21 N -0.576 5.576 22 C 0.196 3.804 23 H 0.395 0.605 24 H 0.112 0.888 25 H -0.285 1.285 26 H -0.298 1.298 27 H 0.180 0.820 28 H 0.419 0.581 29 H 0.080 0.920 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.133 0.867 33 H 0.227 0.773 34 H 0.212 0.788 35 H 0.131 0.869 36 H 0.093 0.907 37 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.479 4.003 -2.247 6.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.362 6.362 2 C -0.159 4.159 3 Si 0.675 3.325 4 C -0.297 4.297 5 C 0.044 3.956 6 N -0.313 5.313 7 C 0.193 3.807 8 N -0.327 5.327 9 C 0.030 3.970 10 C -0.138 4.138 11 H 0.120 0.880 12 C -0.162 4.162 13 C -0.006 4.006 14 H 0.148 0.852 15 N -0.061 5.061 16 C -0.187 4.187 17 C -0.225 4.225 18 N -0.183 5.183 19 N -0.105 5.105 20 C -0.158 4.158 21 N -0.299 5.299 22 C 0.029 3.971 23 H 0.245 0.755 24 H 0.130 0.870 25 H -0.212 1.212 26 H -0.226 1.226 27 H 0.197 0.803 28 H 0.258 0.742 29 H 0.098 0.902 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.151 0.849 33 H 0.244 0.756 34 H 0.229 0.771 35 H 0.149 0.851 36 H 0.111 0.889 37 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -2.694 4.465 -0.921 5.296 hybrid contribution -0.586 -1.118 -1.860 2.248 sum -3.280 3.347 -2.782 5.450 Atomic orbital electron populations 1.86485 1.17203 1.82071 1.50473 1.24788 0.85136 1.10067 0.95899 0.94002 0.77802 0.75116 0.85566 1.21756 1.08724 0.97470 1.01765 1.23117 0.89215 0.91690 0.91559 1.67998 1.17498 1.40614 1.05163 1.19673 0.87530 0.85883 0.87564 1.44183 1.58490 1.12457 1.17566 1.21296 0.95553 0.93831 0.86287 1.22901 0.97284 1.00010 0.93647 0.87982 1.23348 0.98674 1.02035 0.92177 1.22877 0.97477 0.78774 1.01456 0.85154 1.47475 1.30269 1.10440 1.17962 1.24188 1.06302 0.85258 1.02953 1.24233 1.00325 1.03198 0.94784 1.75101 1.22268 0.99897 1.20991 1.78286 1.10582 1.10833 1.10822 1.23528 0.95162 1.06160 0.90919 1.67955 1.27584 1.08360 1.26039 1.23169 0.87567 1.00190 0.86192 0.75524 0.87041 1.21169 1.22600 0.80322 0.74237 0.90171 0.91986 0.91597 0.84896 0.75622 0.77109 0.85092 0.88864 0.79487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 1.96 12.85 -148.98 -1.91 0.05 16 2 C -0.05 0.21 2.83 71.24 0.20 0.41 16 3 Si 0.77 -4.26 29.88 68.60 2.05 -2.21 16 4 C -0.29 0.73 5.36 -19.69 -0.11 0.62 16 5 C 0.21 0.02 10.99 84.71 0.93 0.95 16 6 N -0.59 -1.77 10.46 -197.99 -2.07 -3.84 16 7 C 0.55 0.86 8.43 261.48 2.20 3.07 16 8 N -0.69 2.95 5.70 -351.05 -2.00 0.95 16 9 C 0.15 -1.23 5.48 86.38 0.47 -0.75 16 10 C -0.12 1.32 3.33 -10.27 -0.03 1.29 16 11 H 0.10 -1.09 6.98 -2.39 -0.02 -1.11 16 12 C -0.12 1.12 7.44 31.12 0.23 1.35 16 13 C 0.10 -0.67 5.11 45.51 0.23 -0.44 16 14 H 0.13 -1.01 8.14 -2.39 -0.02 -1.03 16 15 N -0.27 -0.15 3.52 -324.68 -1.14 -1.30 16 16 C -0.04 0.10 9.68 83.49 0.81 0.91 16 17 C -0.07 -0.18 12.05 83.73 1.01 0.83 16 18 N -0.32 -3.68 12.41 -58.25 -0.72 -4.40 16 19 N -0.13 -1.26 13.17 37.02 0.49 -0.77 16 20 C -0.12 1.49 6.88 31.12 0.21 1.71 16 21 N -0.58 -0.64 9.59 -197.98 -1.90 -2.54 16 22 C 0.20 -0.47 9.92 84.72 0.84 0.37 16 23 H 0.39 -4.43 8.70 -74.06 -0.64 -5.08 16 24 H 0.11 -0.40 7.96 -2.39 -0.02 -0.42 16 25 H -0.28 0.15 7.11 99.48 0.71 0.86 16 26 H -0.30 -0.76 7.11 99.48 0.71 -0.06 16 27 H 0.18 -0.55 8.06 -2.91 -0.02 -0.57 16 28 H 0.42 -2.86 8.59 -92.71 -0.80 -3.66 16 29 H 0.08 -0.68 7.88 -2.39 -0.02 -0.70 16 30 H 0.06 -0.32 8.14 -2.39 -0.02 -0.34 16 31 H 0.07 -0.29 8.14 -2.39 -0.02 -0.31 16 32 H 0.13 -1.69 8.10 -2.38 -0.02 -1.71 16 33 H 0.23 -2.72 6.74 -2.91 -0.02 -2.74 16 34 H 0.21 -0.79 8.06 -2.91 -0.02 -0.82 16 35 H 0.13 -1.95 7.92 -2.39 -0.02 -1.97 16 36 H 0.09 -1.23 6.98 -2.38 -0.02 -1.25 16 37 H 0.19 -1.52 5.07 -2.91 -0.01 -1.54 16 Total: 0.00 -25.68 314.74 -0.48 -26.17 By element: Atomic # 1 Polarization: -22.14 SS G_CDS: -0.28 Total: -22.41 kcal Atomic # 6 Polarization: 3.31 SS G_CDS: 7.01 Total: 10.31 kcal Atomic # 7 Polarization: -4.56 SS G_CDS: -7.35 Total: -11.90 kcal Atomic # 8 Polarization: 1.96 SS G_CDS: -1.91 Total: 0.05 kcal Atomic # 14 Polarization: -4.26 SS G_CDS: 2.05 Total: -2.21 kcal Total: -25.68 -0.48 -26.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16945872_12175864.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.697 kcal (2) G-P(sol) polarization free energy of solvation -25.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 166.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 165.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds