Wall clock time and date at job start Mon Mar 8 2021 06:57:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86294 * 109.47350 * 2 1 4 4 C 1.50706 * 109.47039 * 120.00136 * 2 1 3 5 5 C 1.38834 * 120.33477 * 65.01815 * 4 2 1 6 6 C 1.38349 * 118.50296 * 179.97438 * 5 4 2 7 7 C 1.39091 * 119.09775 * 359.97438 * 6 5 4 8 8 N 1.39004 * 119.70121 * 180.02562 * 7 6 5 9 9 C 1.46500 * 120.00251 * 0.02562 * 8 7 6 10 10 C 1.53003 * 109.47128 * 179.97438 * 9 8 7 11 11 H 1.09003 * 112.84873 * 43.79757 * 10 9 8 12 12 C 1.53775 * 113.61687 * 174.99869 * 10 9 8 13 13 C 1.53779 * 87.08308 * 139.98163 * 12 10 9 14 14 H 1.09002 * 113.61377 * 220.02404 * 13 12 10 15 15 N 1.46494 * 113.61632 * 89.20290 * 13 12 10 16 16 C 1.35313 * 125.86664 * 274.71309 * 15 13 12 17 17 C 1.35352 * 106.17351 * 179.90333 * 16 15 13 18 18 N 1.33767 * 106.49582 * 0.35573 * 17 16 15 19 19 N 1.28634 * 108.88802 * 359.76980 * 18 17 16 20 20 C 1.53784 * 113.61233 * 272.49803 * 10 9 8 21 21 N 1.32428 * 120.58965 * 359.73074 * 7 6 5 22 22 C 1.31937 * 121.62370 * 0.56561 * 21 7 6 23 23 H 0.96702 * 113.99463 * 299.99873 * 1 2 3 24 24 H 1.08999 * 109.46666 * 239.99911 * 2 1 3 25 25 H 1.48498 * 110.00173 * 178.68314 * 3 2 1 26 26 H 1.48500 * 110.00195 * 299.99860 * 3 2 1 27 27 H 1.07998 * 120.75321 * 359.95338 * 5 4 2 28 28 H 1.07996 * 120.44549 * 179.97438 * 6 5 4 29 29 H 0.97006 * 119.99793 * 180.02562 * 8 7 6 30 30 H 1.08997 * 109.47046 * 299.99353 * 9 8 7 31 31 H 1.08993 * 109.47398 * 59.99710 * 9 8 7 32 32 H 1.09001 * 113.61650 * 254.53030 * 12 10 9 33 33 H 1.09005 * 113.61415 * 25.43152 * 12 10 9 34 34 H 1.07996 * 126.91118 * 0.02562 * 16 15 13 35 35 H 1.08006 * 126.74847 * 180.12837 * 17 16 15 36 36 H 1.08992 * 113.61332 * 334.56548 * 20 10 9 37 37 H 1.09001 * 113.61545 * 105.47393 * 20 10 9 38 38 H 1.08002 * 119.57630 * 179.71393 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7105 1.2305 5 6 1.6879 -2.0660 1.4060 6 6 2.1669 -2.6802 2.5494 7 6 2.8725 -1.9232 3.4788 8 7 3.3599 -2.5276 4.6318 9 6 3.1300 -3.9558 4.8635 10 6 3.7653 -4.3655 6.1937 11 1 3.5743 -3.6487 6.9925 12 6 3.4765 -5.8225 6.5915 13 6 4.9340 -5.8965 7.0761 14 1 5.4250 -6.8408 6.8407 15 7 5.1083 -5.4980 8.4750 16 6 5.2712 -4.2321 8.9243 17 6 5.3922 -4.3220 10.2694 18 7 5.3065 -5.6221 10.5723 19 7 5.1385 -6.2923 9.4873 20 6 5.2426 -4.7744 6.0708 21 7 3.0892 -0.6332 3.2723 22 6 2.6394 -0.0202 2.1940 23 1 -0.3932 0.4417 0.7651 24 1 1.7923 -0.5139 -0.8900 25 1 3.5346 1.7702 0.0321 26 1 1.5616 2.4679 -1.2085 27 1 1.1368 -2.6283 0.6668 28 1 1.9953 -3.7330 2.7180 29 1 3.8523 -2.0037 5.2831 30 1 2.0581 -4.1505 4.8972 31 1 3.5787 -4.5320 4.0543 32 1 2.7444 -5.9194 7.3932 33 1 3.2649 -6.4731 5.7429 34 1 5.2973 -3.3310 8.3295 35 1 5.5340 -3.5051 10.9615 36 1 5.5139 -5.1384 5.0799 37 1 5.9363 -4.0252 6.4522 38 1 2.8313 1.0343 2.0613 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_16945872_13915762.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:57:48 Heat of formation + Delta-G solvation = 149.511127 kcal Electronic energy + Delta-G solvation = -21742.573722 eV Core-core repulsion = 18397.390848 eV Total energy + Delta-G solvation = -3345.182874 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 288.133 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.34409 -41.51881 -40.70999 -38.12799 -36.66364 -34.15374 -33.47199 -32.03071 -31.78476 -29.19547 -27.37775 -26.37349 -25.26645 -24.65092 -23.58909 -22.84105 -22.37139 -21.06334 -18.86238 -18.59871 -18.30848 -17.74937 -17.33636 -16.67571 -16.53104 -16.33183 -16.00079 -15.93707 -15.78233 -15.41530 -15.03419 -14.82916 -14.34384 -14.10861 -14.09806 -13.98776 -13.60190 -13.37718 -12.73567 -12.53015 -12.39818 -12.23342 -12.05227 -12.03016 -11.78817 -11.28442 -11.04740 -10.79130 -10.46789 -10.43527 -10.37153 -8.82233 -5.06827 0.17538 0.35235 0.56754 1.18825 1.27233 1.60335 1.63779 1.88762 1.95642 2.70233 2.78573 2.87262 3.11385 3.23592 3.44744 3.48984 3.53452 3.72211 3.75909 3.84457 3.93276 4.00161 4.04526 4.09548 4.16064 4.20543 4.24586 4.30224 4.32685 4.43643 4.46949 4.50137 4.66543 4.71527 4.78212 4.92965 5.18033 5.21995 5.41460 5.57176 5.86557 6.38722 6.55314 7.06693 7.54404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.542 6.542 2 C -0.053 4.053 3 Si 0.680 3.320 4 C -0.235 4.235 5 C -0.005 4.005 6 C -0.239 4.239 7 C 0.406 3.594 8 N -0.724 5.724 9 C 0.139 3.861 10 C -0.128 4.128 11 H 0.104 0.896 12 C -0.130 4.130 13 C 0.111 3.889 14 H 0.127 0.873 15 N -0.274 5.274 16 C -0.052 4.052 17 C -0.049 4.049 18 N -0.270 5.270 19 N -0.082 5.082 20 C -0.135 4.135 21 N -0.539 5.539 22 C 0.158 3.842 23 H 0.379 0.621 24 H 0.112 0.888 25 H -0.256 1.256 26 H -0.253 1.253 27 H 0.136 0.864 28 H 0.132 0.868 29 H 0.406 0.594 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.085 0.915 33 H 0.114 0.886 34 H 0.188 0.812 35 H 0.191 0.809 36 H 0.115 0.885 37 H 0.086 0.914 38 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.898 1.542 -2.274 2.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.348 6.348 2 C -0.164 4.164 3 Si 0.582 3.418 4 C -0.240 4.240 5 C -0.031 4.031 6 C -0.263 4.263 7 C 0.171 3.829 8 N -0.357 5.357 9 C 0.014 3.986 10 C -0.146 4.146 11 H 0.122 0.878 12 C -0.169 4.169 13 C 0.009 3.991 14 H 0.145 0.855 15 N -0.068 5.068 16 C -0.203 4.203 17 C -0.206 4.206 18 N -0.135 5.135 19 N -0.061 5.061 20 C -0.173 4.173 21 N -0.256 5.256 22 C 0.000 4.000 23 H 0.226 0.774 24 H 0.129 0.871 25 H -0.181 1.181 26 H -0.178 1.178 27 H 0.153 0.847 28 H 0.150 0.850 29 H 0.241 0.759 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.104 0.896 33 H 0.132 0.868 34 H 0.205 0.795 35 H 0.208 0.792 36 H 0.133 0.867 37 H 0.104 0.896 38 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 0.023 0.588 -2.139 2.218 hybrid contribution -0.070 0.284 -0.949 0.993 sum -0.047 0.872 -3.087 3.208 Atomic orbital electron populations 1.86499 1.17310 1.81677 1.49267 1.24790 0.85042 1.09701 0.96915 0.94905 0.81165 0.78081 0.87636 1.21006 1.06856 0.96077 1.00037 1.21206 0.93030 0.93443 0.95402 1.21442 1.06746 1.01325 0.96836 1.18352 0.89336 0.88496 0.86726 1.44428 1.60999 1.09126 1.21129 1.21385 1.00638 0.80570 0.95967 1.22964 0.95794 0.97864 0.98017 0.87834 1.23345 0.94960 0.96041 1.02522 1.22496 0.99974 1.01221 0.75455 0.85534 1.47168 1.45928 1.05405 1.08319 1.23605 1.09874 0.90135 0.96638 1.23693 1.06863 0.95814 0.94207 1.75180 1.15914 1.04106 1.18325 1.78380 1.19124 1.19455 0.89151 1.23528 0.97119 0.97062 0.99603 1.67123 1.25648 1.09061 1.23723 1.22199 0.91354 0.98722 0.87706 0.77419 0.87080 1.18071 1.17781 0.84657 0.84968 0.75863 0.91190 0.91185 0.89611 0.86798 0.79468 0.79175 0.86684 0.89555 0.82789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.15 12.84 -35.23 -0.45 -0.30 16 2 C -0.05 0.04 2.82 36.01 0.10 0.14 16 3 Si 0.68 -0.99 29.83 -169.99 -5.07 -6.06 16 4 C -0.23 0.05 5.36 -104.46 -0.56 -0.51 16 5 C 0.00 0.00 9.83 -39.32 -0.39 -0.39 16 6 C -0.24 0.15 9.33 -39.22 -0.37 -0.21 16 7 C 0.41 0.06 7.65 -155.01 -1.19 -1.13 16 8 N -0.72 1.79 5.73 -60.43 -0.35 1.44 16 9 C 0.14 -0.66 4.73 -4.04 -0.02 -0.68 16 10 C -0.13 0.69 3.34 -89.81 -0.30 0.39 16 11 H 0.10 -0.51 7.01 -51.93 -0.36 -0.88 16 12 C -0.13 0.62 7.44 -25.92 -0.19 0.43 16 13 C 0.11 -0.39 5.10 -67.12 -0.34 -0.73 16 14 H 0.13 -0.50 8.14 -51.93 -0.42 -0.93 16 15 N -0.27 0.00 3.52 -53.97 -0.19 -0.19 16 16 C -0.05 0.06 9.69 -17.05 -0.17 -0.10 16 17 C -0.05 -0.05 12.05 -17.74 -0.21 -0.26 16 18 N -0.27 -1.29 12.41 30.24 0.38 -0.91 16 19 N -0.08 -0.33 13.16 60.35 0.79 0.47 16 20 C -0.13 0.75 6.88 -25.91 -0.18 0.57 16 21 N -0.54 -0.80 10.39 -12.44 -0.13 -0.93 16 22 C 0.16 0.03 9.84 -17.57 -0.17 -0.14 16 23 H 0.38 -1.50 8.70 45.56 0.40 -1.10 16 24 H 0.11 -0.05 7.96 -51.93 -0.41 -0.46 16 25 H -0.26 -0.25 7.11 56.52 0.40 0.16 16 26 H -0.25 -0.47 7.11 56.52 0.40 -0.06 16 27 H 0.14 -0.18 8.06 -52.49 -0.42 -0.60 16 28 H 0.13 -0.34 6.71 -52.49 -0.35 -0.69 16 29 H 0.41 -1.20 8.60 -40.82 -0.35 -1.55 16 30 H 0.07 -0.32 7.93 -51.93 -0.41 -0.73 16 31 H 0.07 -0.37 7.63 -51.93 -0.40 -0.77 16 32 H 0.09 -0.26 8.14 -51.93 -0.42 -0.68 16 33 H 0.11 -0.74 8.10 -51.93 -0.42 -1.16 16 34 H 0.19 -0.92 6.76 -52.49 -0.35 -1.27 16 35 H 0.19 -0.38 8.06 -52.48 -0.42 -0.81 16 36 H 0.11 -0.75 7.89 -51.93 -0.41 -1.16 16 37 H 0.09 -0.46 6.98 -51.93 -0.36 -0.83 16 38 H 0.16 -0.29 4.91 -52.49 -0.26 -0.55 16 LS Contribution 317.73 15.07 4.79 4.79 Total: 0.00 -9.58 317.73 -8.80 -18.38 By element: Atomic # 1 Polarization: -9.48 SS G_CDS: -4.59 Total: -14.07 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: -3.98 Total: -2.60 kcal Atomic # 7 Polarization: -0.64 SS G_CDS: 0.50 Total: -0.13 kcal Atomic # 8 Polarization: 0.15 SS G_CDS: -0.45 Total: -0.30 kcal Atomic # 14 Polarization: -0.99 SS G_CDS: -5.07 Total: -6.06 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -9.58 -8.80 -18.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16945872_13915762.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.893 kcal (2) G-P(sol) polarization free energy of solvation -9.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 158.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 149.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds