Wall clock time and date at job start Mon Mar 8 2021 06:57:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86294 * 109.47350 * 2 1 4 4 C 1.50706 * 109.47039 * 120.00136 * 2 1 3 5 5 C 1.38834 * 120.33477 * 65.01815 * 4 2 1 6 6 C 1.38349 * 118.50296 * 179.97438 * 5 4 2 7 7 C 1.39091 * 119.09775 * 359.97438 * 6 5 4 8 8 N 1.39004 * 119.70121 * 180.02562 * 7 6 5 9 9 C 1.46500 * 120.00251 * 0.02562 * 8 7 6 10 10 C 1.53003 * 109.47128 * 179.97438 * 9 8 7 11 11 H 1.09003 * 112.84873 * 43.79757 * 10 9 8 12 12 C 1.53775 * 113.61687 * 174.99869 * 10 9 8 13 13 C 1.53779 * 87.08308 * 139.98163 * 12 10 9 14 14 H 1.09002 * 113.61377 * 220.02404 * 13 12 10 15 15 N 1.46494 * 113.61632 * 89.20290 * 13 12 10 16 16 C 1.35313 * 125.86664 * 274.71309 * 15 13 12 17 17 C 1.35352 * 106.17351 * 179.90333 * 16 15 13 18 18 N 1.33767 * 106.49582 * 0.35573 * 17 16 15 19 19 N 1.28634 * 108.88802 * 359.76980 * 18 17 16 20 20 C 1.53784 * 113.61233 * 272.49803 * 10 9 8 21 21 N 1.32428 * 120.58965 * 359.73074 * 7 6 5 22 22 C 1.31937 * 121.62370 * 0.56561 * 21 7 6 23 23 H 0.96702 * 113.99463 * 299.99873 * 1 2 3 24 24 H 1.08999 * 109.46666 * 239.99911 * 2 1 3 25 25 H 1.48498 * 110.00173 * 178.68314 * 3 2 1 26 26 H 1.48500 * 110.00195 * 299.99860 * 3 2 1 27 27 H 1.07998 * 120.75321 * 359.95338 * 5 4 2 28 28 H 1.07996 * 120.44549 * 179.97438 * 6 5 4 29 29 H 0.97006 * 119.99793 * 180.02562 * 8 7 6 30 30 H 1.08997 * 109.47046 * 299.99353 * 9 8 7 31 31 H 1.08993 * 109.47398 * 59.99710 * 9 8 7 32 32 H 1.09001 * 113.61650 * 254.53030 * 12 10 9 33 33 H 1.09005 * 113.61415 * 25.43152 * 12 10 9 34 34 H 1.07996 * 126.91118 * 0.02562 * 16 15 13 35 35 H 1.08006 * 126.74847 * 180.12837 * 17 16 15 36 36 H 1.08992 * 113.61332 * 334.56548 * 20 10 9 37 37 H 1.09001 * 113.61545 * 105.47393 * 20 10 9 38 38 H 1.08002 * 119.57630 * 179.71393 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7105 1.2305 5 6 1.6879 -2.0660 1.4060 6 6 2.1669 -2.6802 2.5494 7 6 2.8725 -1.9232 3.4788 8 7 3.3599 -2.5276 4.6318 9 6 3.1300 -3.9558 4.8635 10 6 3.7653 -4.3655 6.1937 11 1 3.5743 -3.6487 6.9925 12 6 3.4765 -5.8225 6.5915 13 6 4.9340 -5.8965 7.0761 14 1 5.4250 -6.8408 6.8407 15 7 5.1083 -5.4980 8.4750 16 6 5.2712 -4.2321 8.9243 17 6 5.3922 -4.3220 10.2694 18 7 5.3065 -5.6221 10.5723 19 7 5.1385 -6.2923 9.4873 20 6 5.2426 -4.7744 6.0708 21 7 3.0892 -0.6332 3.2723 22 6 2.6394 -0.0202 2.1940 23 1 -0.3932 0.4417 0.7651 24 1 1.7923 -0.5139 -0.8900 25 1 3.5346 1.7702 0.0321 26 1 1.5616 2.4679 -1.2085 27 1 1.1368 -2.6283 0.6668 28 1 1.9953 -3.7330 2.7180 29 1 3.8523 -2.0037 5.2831 30 1 2.0581 -4.1505 4.8972 31 1 3.5787 -4.5320 4.0543 32 1 2.7444 -5.9194 7.3932 33 1 3.2649 -6.4731 5.7429 34 1 5.2973 -3.3310 8.3295 35 1 5.5340 -3.5051 10.9615 36 1 5.5139 -5.1384 5.0799 37 1 5.9363 -4.0252 6.4522 38 1 2.8313 1.0343 2.0613 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_16945872_13915762.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:57:48 Heat of formation + Delta-G solvation = 147.697373 kcal Electronic energy + Delta-G solvation = -21742.652373 eV Core-core repulsion = 18397.390848 eV Total energy + Delta-G solvation = -3345.261525 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 288.133 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.33851 -41.39644 -40.42884 -38.02923 -36.49615 -34.10124 -33.39770 -32.03169 -31.66000 -28.97293 -26.98270 -26.25958 -25.10553 -24.55958 -23.59511 -22.72083 -22.20287 -20.84069 -18.69758 -18.49618 -18.06696 -17.62254 -17.27627 -16.50373 -16.39287 -16.16737 -15.87928 -15.76480 -15.62419 -15.27925 -14.87374 -14.65358 -14.33818 -13.99947 -13.88029 -13.58914 -13.41481 -13.20556 -12.75601 -12.36367 -12.21076 -12.09416 -12.00954 -11.81257 -11.59061 -11.11933 -10.95543 -10.70718 -10.40984 -10.38683 -10.37115 -8.66094 -4.98486 0.25661 0.42358 0.59898 1.35219 1.36692 1.57095 1.64842 1.98561 2.12177 2.86661 3.03408 3.23646 3.48165 3.58274 3.59626 3.65936 3.68054 3.81720 4.03937 4.08355 4.14126 4.16971 4.24724 4.29366 4.38865 4.46227 4.54324 4.61632 4.64116 4.70722 4.77679 4.78037 4.86603 4.95459 5.03197 5.15877 5.23194 5.32955 5.54615 5.69999 6.05395 6.57185 6.80735 7.17491 7.48289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.557 6.557 2 C -0.054 4.054 3 Si 0.764 3.236 4 C -0.239 4.239 5 C -0.015 4.015 6 C -0.241 4.241 7 C 0.395 3.605 8 N -0.718 5.718 9 C 0.140 3.860 10 C -0.117 4.117 11 H 0.101 0.899 12 C -0.123 4.123 13 C 0.093 3.907 14 H 0.129 0.871 15 N -0.267 5.267 16 C -0.035 4.035 17 C -0.067 4.067 18 N -0.318 5.318 19 N -0.127 5.127 20 C -0.122 4.122 21 N -0.564 5.564 22 C 0.148 3.852 23 H 0.394 0.606 24 H 0.106 0.894 25 H -0.287 1.287 26 H -0.299 1.299 27 H 0.143 0.857 28 H 0.151 0.849 29 H 0.408 0.592 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.066 0.934 33 H 0.135 0.865 34 H 0.227 0.773 35 H 0.212 0.788 36 H 0.131 0.869 37 H 0.090 0.910 38 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.971 1.846 -3.019 3.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.365 6.365 2 C -0.165 4.165 3 Si 0.671 3.329 4 C -0.245 4.245 5 C -0.040 4.040 6 C -0.266 4.266 7 C 0.158 3.842 8 N -0.351 5.351 9 C 0.016 3.984 10 C -0.135 4.135 11 H 0.119 0.881 12 C -0.162 4.162 13 C -0.008 4.008 14 H 0.147 0.853 15 N -0.061 5.061 16 C -0.187 4.187 17 C -0.225 4.225 18 N -0.182 5.182 19 N -0.106 5.106 20 C -0.160 4.160 21 N -0.282 5.282 22 C -0.010 4.010 23 H 0.244 0.756 24 H 0.124 0.876 25 H -0.214 1.214 26 H -0.227 1.227 27 H 0.160 0.840 28 H 0.169 0.831 29 H 0.244 0.756 30 H 0.089 0.911 31 H 0.100 0.900 32 H 0.085 0.915 33 H 0.153 0.847 34 H 0.243 0.757 35 H 0.229 0.771 36 H 0.149 0.851 37 H 0.108 0.892 38 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -0.065 0.846 -2.851 2.975 hybrid contribution -0.054 0.208 -0.770 0.800 sum -0.119 1.054 -3.622 3.774 Atomic orbital electron populations 1.86459 1.17472 1.82110 1.50473 1.24832 0.85009 1.10039 0.96621 0.93904 0.77921 0.75893 0.85193 1.21025 1.07066 0.96313 1.00058 1.21405 0.93191 0.93599 0.95854 1.21647 1.06303 1.02204 0.96453 1.18622 0.89554 0.88373 0.87601 1.44539 1.60341 1.09896 1.20308 1.21487 1.00903 0.79459 0.96560 1.22846 0.95852 0.97261 0.97591 0.88082 1.23365 0.93395 0.96981 1.02485 1.22894 1.01297 1.02439 0.74187 0.85340 1.47467 1.44276 1.05540 1.08860 1.24177 1.07465 0.90777 0.96271 1.24236 1.07149 0.95248 0.95879 1.75098 1.17599 1.06016 1.19530 1.78285 1.21555 1.20692 0.90028 1.23544 0.96920 0.96016 0.99488 1.67139 1.26653 1.09968 1.24422 1.22430 0.91418 0.99434 0.87675 0.75634 0.87628 1.21421 1.22666 0.83970 0.83130 0.75618 0.91114 0.89956 0.91550 0.84731 0.75691 0.77094 0.85084 0.89169 0.81588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.47 12.84 -148.98 -1.91 -1.44 16 2 C -0.05 0.08 2.82 71.24 0.20 0.28 16 3 Si 0.76 -1.97 29.83 68.60 2.05 0.07 16 4 C -0.24 0.16 5.36 -19.76 -0.11 0.05 16 5 C -0.01 0.02 9.83 22.44 0.22 0.24 16 6 C -0.24 0.57 9.33 22.50 0.21 0.78 16 7 C 0.39 -0.25 7.65 133.04 1.02 0.77 16 8 N -0.72 4.61 5.73 -345.10 -1.98 2.64 16 9 C 0.14 -1.60 4.73 86.38 0.41 -1.19 16 10 C -0.12 1.48 3.34 -10.27 -0.03 1.44 16 11 H 0.10 -1.18 7.01 -2.39 -0.02 -1.20 16 12 C -0.12 1.31 7.44 31.12 0.23 1.54 16 13 C 0.09 -0.72 5.10 45.52 0.23 -0.49 16 14 H 0.13 -1.05 8.14 -2.39 -0.02 -1.07 16 15 N -0.27 -0.04 3.52 -324.67 -1.14 -1.18 16 16 C -0.04 0.11 9.69 83.49 0.81 0.92 16 17 C -0.07 -0.16 12.05 83.73 1.01 0.85 16 18 N -0.32 -3.58 12.41 -58.25 -0.72 -4.30 16 19 N -0.13 -1.22 13.16 37.02 0.49 -0.73 16 20 C -0.12 1.60 6.88 31.12 0.21 1.82 16 21 N -0.56 -1.46 10.39 -193.26 -2.01 -3.47 16 22 C 0.15 0.03 9.84 84.64 0.83 0.87 16 23 H 0.39 -3.34 8.70 -74.06 -0.64 -3.98 16 24 H 0.11 -0.07 7.96 -2.39 -0.02 -0.09 16 25 H -0.29 -0.73 7.11 99.48 0.71 -0.02 16 26 H -0.30 -1.49 7.11 99.48 0.71 -0.78 16 27 H 0.14 -0.45 8.06 -2.91 -0.02 -0.47 16 28 H 0.15 -1.05 6.71 -2.91 -0.02 -1.07 16 29 H 0.41 -3.01 8.60 -92.70 -0.80 -3.81 16 30 H 0.07 -0.77 7.93 -2.39 -0.02 -0.79 16 31 H 0.08 -1.10 7.63 -2.39 -0.02 -1.11 16 32 H 0.07 -0.39 8.14 -2.39 -0.02 -0.41 16 33 H 0.13 -1.99 8.10 -2.38 -0.02 -2.01 16 34 H 0.23 -2.74 6.76 -2.91 -0.02 -2.76 16 35 H 0.21 -0.85 8.06 -2.91 -0.02 -0.87 16 36 H 0.13 -2.07 7.89 -2.39 -0.02 -2.09 16 37 H 0.09 -1.19 6.98 -2.39 -0.02 -1.21 16 38 H 0.17 -0.65 4.91 -2.91 -0.01 -0.66 16 Total: 0.00 -24.67 317.73 -0.28 -24.95 By element: Atomic # 1 Polarization: -24.13 SS G_CDS: -0.29 Total: -24.42 kcal Atomic # 6 Polarization: 2.64 SS G_CDS: 5.25 Total: 7.88 kcal Atomic # 7 Polarization: -1.68 SS G_CDS: -5.36 Total: -7.04 kcal Atomic # 8 Polarization: 0.47 SS G_CDS: -1.91 Total: -1.44 kcal Atomic # 14 Polarization: -1.97 SS G_CDS: 2.05 Total: 0.07 kcal Total: -24.67 -0.28 -24.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16945872_13915762.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.643 kcal (2) G-P(sol) polarization free energy of solvation -24.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 147.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 147.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds