Wall clock time and date at job start Mon Mar 8 2021 06:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86298 * 109.47310 * 2 1 4 4 C 1.50700 * 109.47255 * 119.99811 * 2 1 3 5 5 C 1.33329 * 125.94946 * 64.99528 * 4 2 1 6 6 N 1.32124 * 114.58022 * 179.75777 * 5 4 2 7 7 C 1.29687 * 116.86543 * 0.24636 * 6 5 4 8 8 N 1.38608 * 124.95276 * 180.02562 * 7 6 5 9 9 C 1.46500 * 119.99669 * 359.97438 * 8 7 6 10 10 C 1.52997 * 109.46972 * 179.97438 * 9 8 7 11 11 H 1.09007 * 112.85341 * 43.80537 * 10 9 8 12 12 C 1.53778 * 113.61704 * 174.99573 * 10 9 8 13 13 C 1.53781 * 87.08282 * 139.98193 * 12 10 9 14 14 H 1.09001 * 113.61085 * 219.93941 * 13 12 10 15 15 N 1.46492 * 113.61410 * 89.12138 * 13 12 10 16 16 C 1.35318 * 125.86600 * 274.71875 * 15 13 12 17 17 C 1.35356 * 106.17559 * 179.90689 * 16 15 13 18 18 N 1.33775 * 106.49241 * 0.34602 * 17 16 15 19 19 N 1.28628 * 108.88919 * 359.77745 * 18 17 16 20 20 C 1.53774 * 113.61574 * 272.49550 * 10 9 8 21 21 S 1.70968 * 110.10148 * 0.02562 * 7 6 5 22 22 H 0.96703 * 113.99800 * 60.00322 * 1 2 3 23 23 H 1.08999 * 109.47089 * 239.99646 * 2 1 3 24 24 H 1.48500 * 109.99921 * 59.99374 * 3 2 1 25 25 H 1.48499 * 110.00172 * 181.31676 * 3 2 1 26 26 H 1.08002 * 122.71397 * 0.03494 * 5 4 2 27 27 H 0.97004 * 119.99967 * 179.97438 * 8 7 6 28 28 H 1.09000 * 109.46869 * 299.99628 * 9 8 7 29 29 H 1.08992 * 109.47528 * 59.99756 * 9 8 7 30 30 H 1.09004 * 113.62036 * 254.53366 * 12 10 9 31 31 H 1.09003 * 113.61270 * 25.43185 * 12 10 9 32 32 H 1.07993 * 126.91194 * 0.02562 * 16 15 13 33 33 H 1.07997 * 126.75189 * 180.12309 * 17 16 15 34 34 H 1.08994 * 113.61618 * 334.56831 * 20 10 9 35 35 H 1.09004 * 113.61790 * 105.47286 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7104 1.2305 5 6 1.7622 -2.0025 1.5122 6 7 2.3021 -2.3914 2.6537 7 6 2.9150 -1.4857 3.3507 8 7 3.5392 -1.7080 4.5681 9 6 3.5363 -3.0487 5.1587 10 6 4.2875 -3.0205 6.4913 11 1 4.0295 -2.1571 7.1046 12 6 4.2385 -4.3547 7.2544 13 6 5.7120 -4.1096 7.6199 14 1 6.3264 -5.0092 7.5829 15 7 5.8905 -3.3492 8.8592 16 6 5.8839 -2.0006 8.9698 17 6 6.0801 -1.7288 10.2812 18 7 6.2032 -2.9088 10.8993 19 7 6.0861 -3.8489 10.0292 20 6 5.8018 -3.2474 6.3496 21 16 2.8411 0.0226 2.5491 22 1 -0.3933 0.4417 -0.7651 23 1 1.7923 -0.5139 -0.8899 24 1 1.5614 2.4679 1.2084 25 1 3.5346 1.7702 -0.0321 26 1 1.2307 -2.6778 0.8581 27 1 3.9780 -0.9758 5.0291 28 1 2.5082 -3.3690 5.3275 29 1 4.0273 -3.7458 4.4799 30 1 3.5676 -4.3421 8.1134 31 1 4.0866 -5.2208 6.6102 32 1 5.7475 -1.2851 8.1725 33 1 6.1311 -0.7515 10.7380 34 1 6.0774 -3.8107 5.4582 35 1 6.3932 -2.3408 6.4783 There are 50 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 50 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_16945872_15704118.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:57:51 Heat of formation + Delta-G solvation = 160.260355 kcal Electronic energy + Delta-G solvation = -20361.445209 eV Core-core repulsion = 17105.880702 eV Total energy + Delta-G solvation = -3255.564507 eV No. of doubly occupied orbitals = 50 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 294.089 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -44.34906 -41.03206 -40.47117 -37.97223 -36.72933 -34.09167 -32.03738 -31.72514 -29.54924 -27.37115 -26.53838 -25.53283 -24.13313 -23.59684 -22.82842 -21.16158 -20.65264 -19.74503 -18.51941 -18.33476 -17.65463 -17.44954 -16.88460 -16.49622 -16.21711 -15.87858 -15.60069 -15.53176 -15.20679 -15.06871 -14.56105 -14.35838 -14.11688 -13.96678 -13.52934 -12.87218 -12.73665 -12.53047 -12.45786 -12.21409 -12.09920 -12.06073 -11.79033 -11.28559 -11.04844 -10.70265 -10.38191 -10.36907 -10.21641 -8.83768 -5.25614 -0.11333 0.02286 0.56159 0.59803 1.18116 1.18768 1.53221 1.62927 1.87504 1.94918 1.97648 2.70785 2.87849 3.14413 3.22885 3.39952 3.47020 3.65122 3.78526 3.87234 3.93597 4.02329 4.11237 4.18910 4.23630 4.30015 4.35776 4.43950 4.48056 4.57185 4.69234 4.72902 4.79874 5.01350 5.16939 5.56705 5.68424 5.88955 6.54581 6.90911 7.53886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.545 6.545 2 C -0.018 4.018 3 Si 0.669 3.331 4 C -0.259 4.259 5 C 0.123 3.877 6 N -0.546 5.546 7 C 0.328 3.672 8 N -0.693 5.693 9 C 0.146 3.854 10 C -0.131 4.131 11 H 0.102 0.898 12 C -0.128 4.128 13 C 0.111 3.889 14 H 0.128 0.872 15 N -0.274 5.274 16 C -0.053 4.053 17 C -0.049 4.049 18 N -0.270 5.270 19 N -0.081 5.081 20 C -0.135 4.135 21 S 0.070 5.930 22 H 0.383 0.617 23 H 0.083 0.917 24 H -0.238 1.238 25 H -0.243 1.243 26 H 0.179 0.821 27 H 0.414 0.586 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.115 0.885 32 H 0.187 0.813 33 H 0.191 0.809 34 H 0.116 0.884 35 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.043 3.119 -6.881 7.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.352 6.352 2 C -0.132 4.132 3 Si 0.568 3.432 4 C -0.381 4.381 5 C -0.028 4.028 6 N -0.272 5.272 7 C -0.043 4.043 8 N -0.333 5.333 9 C 0.021 3.979 10 C -0.150 4.150 11 H 0.120 0.880 12 C -0.167 4.167 13 C 0.009 3.991 14 H 0.145 0.855 15 N -0.068 5.068 16 C -0.204 4.204 17 C -0.206 4.206 18 N -0.135 5.135 19 N -0.060 5.060 20 C -0.174 4.174 21 S 0.319 5.681 22 H 0.231 0.769 23 H 0.100 0.900 24 H -0.162 1.162 25 H -0.167 1.167 26 H 0.196 0.804 27 H 0.251 0.749 28 H 0.092 0.908 29 H 0.093 0.907 30 H 0.104 0.896 31 H 0.133 0.867 32 H 0.204 0.796 33 H 0.208 0.792 34 H 0.134 0.866 35 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.041 2.364 -4.565 5.245 hybrid contribution -0.399 0.244 -0.922 1.034 sum 0.642 2.608 -5.487 6.109 Atomic orbital electron populations 1.86524 1.17154 1.81758 1.49771 1.23690 0.85498 1.09336 0.94642 0.95092 0.81737 0.78109 0.88237 1.24298 1.14625 0.96806 1.02387 1.21358 0.96299 0.93096 0.92037 1.66469 1.18789 1.33211 1.08726 1.23782 0.95508 0.93005 0.91980 1.43974 1.59461 1.12094 1.17822 1.21383 1.01207 0.83181 0.92143 1.23019 0.95416 0.99774 0.96795 0.87990 1.23333 0.94277 0.98092 1.00989 1.22511 1.00325 0.96222 0.80073 0.85454 1.47184 1.45569 1.05614 1.08397 1.23581 1.10290 0.85924 1.00575 1.23689 1.06559 0.99090 0.91245 1.75182 1.16489 0.97521 1.24328 1.78383 1.18333 1.22389 0.86907 1.23541 0.96542 1.00823 0.96456 1.84119 1.55958 1.11990 1.16047 0.76878 0.89962 1.16222 1.16695 0.80421 0.74928 0.90775 0.90668 0.89608 0.86665 0.79573 0.79198 0.86583 0.89641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.11 12.86 -35.23 -0.45 -0.34 16 2 C -0.02 0.01 2.98 36.01 0.11 0.11 16 3 Si 0.67 -0.83 31.07 -169.99 -5.28 -6.11 16 4 C -0.26 -0.56 5.76 -36.02 -0.21 -0.76 16 5 C 0.12 0.32 11.24 -19.14 -0.22 0.10 16 6 N -0.55 -1.76 10.14 -15.21 -0.15 -1.92 16 7 C 0.33 0.51 8.09 -87.68 -0.71 -0.20 16 8 N -0.69 1.15 5.71 -62.30 -0.36 0.79 16 9 C 0.15 -0.41 5.79 -4.04 -0.02 -0.43 16 10 C -0.13 0.60 3.34 -89.81 -0.30 0.30 16 11 H 0.10 -0.47 7.00 -51.92 -0.36 -0.83 16 12 C -0.13 0.49 7.44 -25.92 -0.19 0.30 16 13 C 0.11 -0.33 5.11 -67.12 -0.34 -0.67 16 14 H 0.13 -0.44 8.14 -51.93 -0.42 -0.86 16 15 N -0.27 -0.10 3.52 -53.98 -0.19 -0.29 16 16 C -0.05 0.05 9.68 -17.04 -0.17 -0.11 16 17 C -0.05 -0.06 12.06 -17.73 -0.21 -0.27 16 18 N -0.27 -1.35 12.41 30.24 0.38 -0.98 16 19 N -0.08 -0.35 13.16 60.35 0.79 0.44 16 20 C -0.14 0.69 6.88 -25.92 -0.18 0.51 16 21 S 0.07 0.12 20.59 -107.50 -2.21 -2.09 16 22 H 0.38 -2.06 8.74 45.56 0.40 -1.66 16 23 H 0.08 -0.20 7.96 -51.93 -0.41 -0.61 16 24 H -0.24 -0.46 7.11 56.52 0.40 -0.06 16 25 H -0.24 -0.26 7.11 56.52 0.40 0.15 16 26 H 0.18 0.15 8.06 -52.49 -0.42 -0.27 16 27 H 0.41 -1.59 8.60 -40.82 -0.35 -1.94 16 28 H 0.07 -0.10 8.14 -51.93 -0.42 -0.52 16 29 H 0.08 -0.18 7.84 -51.93 -0.41 -0.59 16 30 H 0.09 -0.18 8.14 -51.93 -0.42 -0.61 16 31 H 0.12 -0.59 8.10 -51.93 -0.42 -1.01 16 32 H 0.19 -0.91 6.75 -52.49 -0.35 -1.26 16 33 H 0.19 -0.36 8.06 -52.49 -0.42 -0.78 16 34 H 0.12 -0.67 7.89 -51.93 -0.41 -1.08 16 35 H 0.09 -0.45 6.97 -51.93 -0.36 -0.82 16 LS Contribution 312.43 15.07 4.71 4.71 Total: 0.00 -10.47 312.43 -9.20 -19.67 By element: Atomic # 1 Polarization: -8.78 SS G_CDS: -3.99 Total: -12.77 kcal Atomic # 6 Polarization: 1.32 SS G_CDS: -2.44 Total: -1.12 kcal Atomic # 7 Polarization: -2.42 SS G_CDS: 0.47 Total: -1.95 kcal Atomic # 8 Polarization: 0.11 SS G_CDS: -0.45 Total: -0.34 kcal Atomic # 14 Polarization: -0.83 SS G_CDS: -5.28 Total: -6.11 kcal Atomic # 16 Polarization: 0.12 SS G_CDS: -2.21 Total: -2.09 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -10.47 -9.20 -19.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16945872_15704118.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.932 kcal (2) G-P(sol) polarization free energy of solvation -10.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 169.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 160.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds