Wall clock time and date at job start Mon Mar 8 2021 06:57:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86298 * 109.47310 * 2 1 4 4 C 1.50700 * 109.47255 * 119.99811 * 2 1 3 5 5 C 1.33329 * 125.94946 * 64.99528 * 4 2 1 6 6 N 1.32124 * 114.58022 * 179.75777 * 5 4 2 7 7 C 1.29687 * 116.86543 * 0.24636 * 6 5 4 8 8 N 1.38608 * 124.95276 * 180.02562 * 7 6 5 9 9 C 1.46500 * 119.99669 * 359.97438 * 8 7 6 10 10 C 1.52997 * 109.46972 * 179.97438 * 9 8 7 11 11 H 1.09007 * 112.85341 * 43.80537 * 10 9 8 12 12 C 1.53778 * 113.61704 * 174.99573 * 10 9 8 13 13 C 1.53781 * 87.08282 * 139.98193 * 12 10 9 14 14 H 1.09001 * 113.61085 * 219.93941 * 13 12 10 15 15 N 1.46492 * 113.61410 * 89.12138 * 13 12 10 16 16 C 1.35318 * 125.86600 * 274.71875 * 15 13 12 17 17 C 1.35356 * 106.17559 * 179.90689 * 16 15 13 18 18 N 1.33775 * 106.49241 * 0.34602 * 17 16 15 19 19 N 1.28628 * 108.88919 * 359.77745 * 18 17 16 20 20 C 1.53774 * 113.61574 * 272.49550 * 10 9 8 21 21 S 1.70968 * 110.10148 * 0.02562 * 7 6 5 22 22 H 0.96703 * 113.99800 * 60.00322 * 1 2 3 23 23 H 1.08999 * 109.47089 * 239.99646 * 2 1 3 24 24 H 1.48500 * 109.99921 * 59.99374 * 3 2 1 25 25 H 1.48499 * 110.00172 * 181.31676 * 3 2 1 26 26 H 1.08002 * 122.71397 * 0.03494 * 5 4 2 27 27 H 0.97004 * 119.99967 * 179.97438 * 8 7 6 28 28 H 1.09000 * 109.46869 * 299.99628 * 9 8 7 29 29 H 1.08992 * 109.47528 * 59.99756 * 9 8 7 30 30 H 1.09004 * 113.62036 * 254.53366 * 12 10 9 31 31 H 1.09003 * 113.61270 * 25.43185 * 12 10 9 32 32 H 1.07993 * 126.91194 * 0.02562 * 16 15 13 33 33 H 1.07997 * 126.75189 * 180.12309 * 17 16 15 34 34 H 1.08994 * 113.61618 * 334.56831 * 20 10 9 35 35 H 1.09004 * 113.61790 * 105.47286 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7104 1.2305 5 6 1.7622 -2.0025 1.5122 6 7 2.3021 -2.3914 2.6537 7 6 2.9150 -1.4857 3.3507 8 7 3.5392 -1.7080 4.5681 9 6 3.5363 -3.0487 5.1587 10 6 4.2875 -3.0205 6.4913 11 1 4.0295 -2.1571 7.1046 12 6 4.2385 -4.3547 7.2544 13 6 5.7120 -4.1096 7.6199 14 1 6.3264 -5.0092 7.5829 15 7 5.8905 -3.3492 8.8592 16 6 5.8839 -2.0006 8.9698 17 6 6.0801 -1.7288 10.2812 18 7 6.2032 -2.9088 10.8993 19 7 6.0861 -3.8489 10.0292 20 6 5.8018 -3.2474 6.3496 21 16 2.8411 0.0226 2.5491 22 1 -0.3933 0.4417 -0.7651 23 1 1.7923 -0.5139 -0.8899 24 1 1.5614 2.4679 1.2084 25 1 3.5346 1.7702 -0.0321 26 1 1.2307 -2.6778 0.8581 27 1 3.9780 -0.9758 5.0291 28 1 2.5082 -3.3690 5.3275 29 1 4.0273 -3.7458 4.4799 30 1 3.5676 -4.3421 8.1134 31 1 4.0866 -5.2208 6.6102 32 1 5.7475 -1.2851 8.1725 33 1 6.1311 -0.7515 10.7380 34 1 6.0774 -3.8107 5.4582 35 1 6.3932 -2.3408 6.4783 There are 50 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 50 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_16945872_15704118.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:57:50 Heat of formation + Delta-G solvation = 157.193482 kcal Electronic energy + Delta-G solvation = -20361.578198 eV Core-core repulsion = 17105.880702 eV Total energy + Delta-G solvation = -3255.697496 eV No. of doubly occupied orbitals = 50 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 294.089 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -44.36710 -40.95998 -40.37751 -37.89282 -36.66323 -34.08694 -32.05832 -31.72726 -29.43768 -27.05399 -26.52188 -25.46646 -24.14132 -23.62453 -22.71583 -21.03079 -20.65443 -19.73117 -18.42885 -18.14565 -17.63271 -17.42915 -16.75376 -16.40406 -16.17019 -15.84630 -15.53761 -15.49840 -15.07343 -15.01312 -14.56361 -14.33311 -13.98409 -13.64078 -13.34562 -12.88926 -12.78311 -12.54962 -12.24298 -12.16777 -12.05824 -11.88787 -11.66054 -11.23901 -11.00613 -10.77664 -10.41413 -10.40770 -10.22361 -8.84445 -5.17245 -0.18334 -0.03103 0.52241 0.57278 1.25087 1.32858 1.54934 1.58098 1.86539 1.92899 2.05340 2.97894 3.16501 3.41164 3.46279 3.55684 3.60288 3.73169 3.98874 4.04271 4.08691 4.22057 4.25953 4.37781 4.48374 4.55909 4.60015 4.63352 4.67848 4.73332 4.79317 4.90144 4.96057 5.12411 5.20526 5.66336 5.70482 6.04264 6.85930 6.93095 7.45989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.564 6.564 2 C -0.024 4.024 3 Si 0.754 3.246 4 C -0.274 4.274 5 C 0.110 3.890 6 N -0.572 5.572 7 C 0.327 3.673 8 N -0.681 5.681 9 C 0.151 3.849 10 C -0.118 4.118 11 H 0.107 0.893 12 C -0.125 4.125 13 C 0.097 3.903 14 H 0.130 0.870 15 N -0.268 5.268 16 C -0.036 4.036 17 C -0.067 4.067 18 N -0.317 5.317 19 N -0.127 5.127 20 C -0.120 4.120 21 S 0.054 5.946 22 H 0.405 0.595 23 H 0.106 0.894 24 H -0.285 1.285 25 H -0.274 1.274 26 H 0.188 0.812 27 H 0.425 0.575 28 H 0.059 0.941 29 H 0.076 0.924 30 H 0.067 0.933 31 H 0.129 0.871 32 H 0.229 0.771 33 H 0.213 0.787 34 H 0.129 0.871 35 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.064 3.783 -8.416 9.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.375 6.375 2 C -0.137 4.137 3 Si 0.658 3.342 4 C -0.397 4.397 5 C -0.040 4.040 6 N -0.299 5.299 7 C -0.044 4.044 8 N -0.322 5.322 9 C 0.025 3.975 10 C -0.137 4.137 11 H 0.125 0.875 12 C -0.164 4.164 13 C -0.004 4.004 14 H 0.148 0.852 15 N -0.062 5.062 16 C -0.187 4.187 17 C -0.225 4.225 18 N -0.182 5.182 19 N -0.106 5.106 20 C -0.158 4.158 21 S 0.302 5.698 22 H 0.256 0.744 23 H 0.124 0.876 24 H -0.211 1.211 25 H -0.200 1.200 26 H 0.205 0.795 27 H 0.264 0.736 28 H 0.078 0.922 29 H 0.094 0.906 30 H 0.085 0.915 31 H 0.148 0.852 32 H 0.245 0.755 33 H 0.230 0.770 34 H 0.148 0.852 35 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.143 3.000 -6.109 6.901 hybrid contribution -0.457 0.069 -0.450 0.645 sum 0.686 3.069 -6.559 7.273 Atomic orbital electron populations 1.86470 1.17171 1.82345 1.51499 1.23857 0.85647 1.09757 0.94476 0.94150 0.78545 0.75796 0.85668 1.24653 1.14810 0.96983 1.03218 1.21590 0.96570 0.93609 0.92249 1.66480 1.19966 1.33996 1.09449 1.23982 0.95218 0.92586 0.92620 1.44100 1.58388 1.12993 1.16699 1.21374 1.00660 0.82556 0.92864 1.22912 0.95714 0.99509 0.95587 0.87470 1.23350 0.93232 0.99224 1.00586 1.22843 1.00983 0.96913 0.79707 0.85206 1.47461 1.44037 1.06432 1.08262 1.24203 1.07788 0.85870 1.00872 1.24248 1.06778 0.99109 0.92338 1.75102 1.18137 0.99061 1.25900 1.78297 1.20857 1.23097 0.88323 1.23541 0.95866 1.00939 0.95451 1.84129 1.56474 1.12544 1.16699 0.74376 0.87632 1.21129 1.20002 0.79483 0.73586 0.92229 0.90588 0.91456 0.85244 0.75483 0.77028 0.85249 0.88469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.66 12.86 -148.98 -1.92 -1.25 16 2 C -0.02 0.04 2.98 71.24 0.21 0.25 16 3 Si 0.75 -1.97 31.07 68.60 2.13 0.16 16 4 C -0.27 -1.20 5.76 24.58 0.14 -1.06 16 5 C 0.11 0.60 11.24 83.54 0.94 1.53 16 6 N -0.57 -3.82 10.14 -202.02 -2.05 -5.87 16 7 C 0.33 0.99 8.09 179.32 1.45 2.44 16 8 N -0.68 2.84 5.71 -351.02 -2.01 0.83 16 9 C 0.15 -0.97 5.79 86.38 0.50 -0.47 16 10 C -0.12 1.25 3.34 -10.27 -0.03 1.22 16 11 H 0.11 -1.19 7.00 -2.38 -0.02 -1.21 16 12 C -0.12 1.01 7.44 31.12 0.23 1.24 16 13 C 0.10 -0.63 5.11 45.52 0.23 -0.40 16 14 H 0.13 -0.91 8.14 -2.39 -0.02 -0.93 16 15 N -0.27 -0.18 3.52 -324.68 -1.14 -1.32 16 16 C -0.04 0.11 9.68 83.49 0.81 0.92 16 17 C -0.07 -0.16 12.06 83.73 1.01 0.85 16 18 N -0.32 -3.67 12.41 -58.25 -0.72 -4.39 16 19 N -0.13 -1.29 13.16 37.02 0.49 -0.80 16 20 C -0.12 1.46 6.88 31.12 0.21 1.68 16 21 S 0.05 0.20 20.59 -56.49 -1.16 -0.96 16 22 H 0.40 -4.86 8.74 -74.06 -0.65 -5.51 16 23 H 0.11 -0.66 7.96 -2.39 -0.02 -0.68 16 24 H -0.28 -1.41 7.11 99.48 0.71 -0.70 16 25 H -0.27 -0.65 7.11 99.48 0.71 0.06 16 26 H 0.19 0.36 8.06 -2.91 -0.02 0.34 16 27 H 0.42 -3.88 8.60 -92.71 -0.80 -4.68 16 28 H 0.06 -0.16 8.14 -2.39 -0.02 -0.18 16 29 H 0.08 -0.45 7.84 -2.39 -0.02 -0.47 16 30 H 0.07 -0.25 8.14 -2.38 -0.02 -0.27 16 31 H 0.13 -1.42 8.10 -2.39 -0.02 -1.44 16 32 H 0.23 -2.93 6.75 -2.91 -0.02 -2.94 16 33 H 0.21 -0.88 8.06 -2.91 -0.02 -0.90 16 34 H 0.13 -1.82 7.89 -2.39 -0.02 -1.84 16 35 H 0.10 -1.34 6.97 -2.38 -0.02 -1.35 16 Total: 0.00 -27.16 312.43 -0.94 -28.10 By element: Atomic # 1 Polarization: -22.44 SS G_CDS: -0.26 Total: -22.70 kcal Atomic # 6 Polarization: 2.50 SS G_CDS: 5.70 Total: 8.20 kcal Atomic # 7 Polarization: -6.11 SS G_CDS: -5.43 Total: -11.54 kcal Atomic # 8 Polarization: 0.66 SS G_CDS: -1.92 Total: -1.25 kcal Atomic # 14 Polarization: -1.97 SS G_CDS: 2.13 Total: 0.16 kcal Atomic # 16 Polarization: 0.20 SS G_CDS: -1.16 Total: -0.96 kcal Total: -27.16 -0.94 -28.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16945872_15704118.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.294 kcal (2) G-P(sol) polarization free energy of solvation -27.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 158.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 157.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds