Wall clock time and date at job start Mon Mar 8 2021 06:57:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.33316 * 125.95115 * 2 1 4 4 C 1.50707 * 122.71184 * 359.97438 * 3 2 1 5 5 O 1.42899 * 109.47033 * 330.00514 * 4 3 2 6 6 Si 1.86296 * 109.47202 * 210.00099 * 4 3 2 7 7 N 1.32117 * 114.58112 * 179.75029 * 3 2 1 8 8 C 1.29694 * 116.86361 * 0.47766 * 7 3 2 9 9 N 1.38605 * 124.94739 * 179.81238 * 8 7 3 10 10 C 1.46499 * 119.99611 * 179.44056 * 9 8 7 11 11 C 1.53004 * 109.47198 * 180.27670 * 10 9 8 12 12 H 1.08996 * 112.84823 * 316.19572 * 11 10 9 13 13 C 1.53787 * 113.61355 * 87.50373 * 11 10 9 14 14 C 1.53783 * 87.08023 * 139.98452 * 13 11 10 15 15 H 1.08998 * 113.68844 * 220.00959 * 14 13 11 16 16 N 1.46499 * 113.61670 * 89.11251 * 14 13 11 17 17 C 1.35312 * 125.86617 * 347.21966 * 16 14 13 18 18 C 1.35351 * 106.17225 * 179.90003 * 17 16 14 19 19 N 1.33770 * 106.49502 * 0.35311 * 18 17 16 20 20 N 1.28631 * 108.88776 * 359.77551 * 19 18 17 21 21 C 1.53782 * 113.61417 * 185.00090 * 11 10 9 22 22 S 1.70966 * 110.09955 * 359.54206 * 8 7 3 23 23 H 1.08999 * 109.46973 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.46898 * 299.97871 * 1 2 3 25 25 H 1.09002 * 109.47021 * 59.97856 * 1 2 3 26 26 H 1.09007 * 109.46465 * 90.00055 * 4 3 2 27 27 H 0.96705 * 113.99484 * 299.99323 * 5 4 3 28 28 H 1.48500 * 110.00110 * 58.68401 * 6 4 3 29 29 H 1.48498 * 109.99792 * 180.02562 * 6 4 3 30 30 H 0.97001 * 120.00540 * 359.72147 * 9 8 7 31 31 H 1.09009 * 109.47454 * 300.27439 * 10 9 8 32 32 H 1.08998 * 109.47492 * 60.27734 * 10 9 8 33 33 H 1.08998 * 113.61128 * 254.53330 * 13 11 10 34 34 H 1.08998 * 113.61325 * 25.42994 * 13 11 10 35 35 H 1.07997 * 126.91291 * 0.02562 * 17 16 14 36 36 H 1.08004 * 126.75252 * 180.12033 * 18 17 16 37 37 H 1.09001 * 113.61616 * 334.56263 * 21 11 10 38 38 H 1.09000 * 113.61435 * 105.38746 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2898 1.0792 0.0000 4 6 1.7414 2.4830 -0.0006 5 8 0.4815 2.5019 -0.6746 6 14 2.9326 3.6146 -0.8787 7 7 3.5850 0.8188 0.0052 8 6 3.9315 -0.4310 0.0000 9 7 5.2384 -0.8926 0.0005 10 6 5.5065 -2.3329 0.0066 11 6 7.0180 -2.5703 0.0127 12 1 7.5510 -1.9223 -0.6830 13 6 7.6311 -2.6002 1.4228 14 6 8.5098 -3.7624 0.9306 15 1 8.6383 -4.5563 1.6663 16 7 9.7758 -3.3292 0.3340 17 6 10.0915 -2.0629 -0.0233 18 6 11.3472 -2.1150 -0.5258 19 7 11.7301 -3.3950 -0.4594 20 7 10.7767 -4.0887 0.0547 21 6 7.4091 -4.0530 -0.1034 22 16 2.5413 -1.4261 0.0001 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5135 0.8902 25 1 -0.3633 0.5142 -0.8898 26 1 1.6089 2.8216 1.0271 27 1 0.5241 2.2119 -1.5961 28 1 3.1464 3.1453 -2.2712 29 1 2.4036 5.0022 -0.8855 30 1 5.9756 -0.2621 0.0008 31 1 5.0647 -2.7810 0.8967 32 1 5.0710 -2.7873 -0.8833 33 1 8.1953 -1.7017 1.6727 34 1 6.9234 -2.8868 2.2006 35 1 9.4679 -1.1866 0.0748 36 1 11.9249 -1.2867 -0.9088 37 1 6.6408 -4.7368 0.2573 38 1 7.7928 -4.3277 -1.0860 There are 53 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 53 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_16945872_15704122.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:57:53 Heat of formation + Delta-G solvation = 154.878569 kcal Electronic energy + Delta-G solvation = -22385.084655 eV Core-core repulsion = 18973.749158 eV Total energy + Delta-G solvation = -3411.335497 eV No. of doubly occupied orbitals = 53 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 308.105 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.32179 -41.08100 -40.48830 -38.09102 -36.60812 -34.07791 -32.74156 -32.00288 -29.97231 -28.43654 -26.96566 -25.70679 -25.11761 -24.05594 -23.58215 -22.69905 -21.06486 -20.42270 -19.13794 -18.15453 -17.98020 -17.44868 -17.25609 -16.81663 -16.38529 -16.17438 -15.92676 -15.69382 -15.43698 -15.06273 -14.94814 -14.26326 -14.17643 -13.79687 -13.78188 -13.56997 -13.45550 -13.23505 -12.77138 -12.74370 -12.48513 -12.23215 -12.01178 -11.96642 -11.74952 -11.60013 -11.01816 -10.93833 -10.63461 -10.54667 -10.36862 -10.00086 -8.60205 -4.79080 0.00022 0.18181 0.61962 0.74679 1.30406 1.38675 1.59093 1.67426 1.84623 1.94937 2.01214 3.03550 3.22114 3.30325 3.44736 3.54787 3.59930 3.67916 4.07863 4.12445 4.17226 4.26026 4.30213 4.33479 4.40432 4.54351 4.59015 4.62055 4.67012 4.77549 4.80715 4.85228 4.90724 4.94424 5.05806 5.15339 5.24914 5.29252 5.63491 5.72019 6.31992 6.45128 6.95164 7.50336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C -0.260 4.260 3 C 0.057 3.943 4 C -0.042 4.042 5 O -0.534 6.534 6 Si 0.784 3.216 7 N -0.559 5.559 8 C 0.311 3.689 9 N -0.684 5.684 10 C 0.132 3.868 11 C -0.115 4.115 12 H 0.106 0.894 13 C -0.121 4.121 14 C 0.094 3.906 15 H 0.130 0.870 16 N -0.268 5.268 17 C -0.034 4.034 18 C -0.068 4.068 19 N -0.319 5.319 20 N -0.128 5.128 21 C -0.125 4.125 22 S 0.119 5.881 23 H 0.064 0.936 24 H 0.071 0.929 25 H 0.083 0.917 26 H 0.131 0.869 27 H 0.384 0.616 28 H -0.306 1.306 29 H -0.294 1.294 30 H 0.419 0.581 31 H 0.086 0.914 32 H 0.072 0.928 33 H 0.094 0.906 34 H 0.133 0.867 35 H 0.229 0.771 36 H 0.212 0.788 37 H 0.134 0.866 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.090 -0.416 2.604 4.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.383 4.383 3 C -0.073 4.073 4 C -0.154 4.154 5 O -0.340 6.340 6 Si 0.690 3.310 7 N -0.287 5.287 8 C -0.060 4.060 9 N -0.325 5.325 10 C 0.008 3.992 11 C -0.133 4.133 12 H 0.125 0.875 13 C -0.159 4.159 14 C -0.008 4.008 15 H 0.147 0.853 16 N -0.062 5.062 17 C -0.186 4.186 18 C -0.226 4.226 19 N -0.183 5.183 20 N -0.106 5.106 21 C -0.164 4.164 22 S 0.367 5.633 23 H 0.083 0.917 24 H 0.090 0.910 25 H 0.102 0.898 26 H 0.149 0.851 27 H 0.234 0.766 28 H -0.233 1.233 29 H -0.223 1.223 30 H 0.258 0.742 31 H 0.104 0.896 32 H 0.090 0.910 33 H 0.113 0.887 34 H 0.151 0.849 35 H 0.246 0.754 36 H 0.228 0.772 37 H 0.152 0.848 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.311 -2.064 2.562 4.020 hybrid contribution -0.970 1.511 -0.896 2.007 sum -3.281 -0.553 1.666 3.721 Atomic orbital electron populations 1.20143 0.85913 1.02068 1.03587 1.25321 1.02009 0.93322 1.17661 1.20172 0.87158 0.97440 1.02551 1.24494 0.91662 0.95211 1.04050 1.86603 1.28705 1.89081 1.29660 0.92929 0.85228 0.73720 0.79121 1.65724 1.17063 1.17271 1.28614 1.23508 0.92866 0.91350 0.98288 1.43998 1.00944 1.07953 1.79605 1.21656 0.95884 0.78478 1.03160 1.22831 0.94221 0.97802 0.98491 0.87545 1.23563 0.97598 0.97134 0.97589 1.22889 0.78327 1.01741 0.97804 0.85265 1.47476 1.13262 1.06389 1.39042 1.24203 0.99204 0.90606 1.04570 1.24240 0.96320 0.95839 1.06218 1.75100 1.21424 1.05451 1.16362 1.78286 0.93204 1.21177 1.17972 1.23379 0.96900 0.97099 0.98995 1.83841 0.95960 1.09651 1.73805 0.91663 0.91034 0.89830 0.85139 0.76620 1.23316 1.22250 0.74192 0.89553 0.90994 0.88728 0.84907 0.75430 0.77165 0.84758 0.91471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 0.06 8.91 71.24 0.63 0.69 16 2 C -0.26 -0.39 6.50 24.58 0.16 -0.23 16 3 C 0.06 0.15 5.91 41.40 0.24 0.40 16 4 C -0.04 -0.05 2.94 71.24 0.21 0.16 16 5 O -0.53 -0.73 10.17 -148.98 -1.52 -2.24 16 6 Si 0.78 1.51 32.09 68.60 2.20 3.71 16 7 N -0.56 -1.33 8.95 -189.86 -1.70 -3.03 16 8 C 0.31 -0.40 8.24 179.32 1.48 1.08 16 9 N -0.68 5.46 5.71 -351.00 -2.01 3.46 16 10 C 0.13 -1.63 5.37 86.38 0.46 -1.17 16 11 C -0.11 1.62 3.33 -10.26 -0.03 1.59 16 12 H 0.11 -1.46 6.96 -2.39 -0.02 -1.48 16 13 C -0.12 1.80 6.88 31.12 0.21 2.01 16 14 C 0.09 -0.84 5.11 45.52 0.23 -0.60 16 15 H 0.13 -1.20 8.14 -2.39 -0.02 -1.22 16 16 N -0.27 0.25 3.52 -324.66 -1.14 -0.89 16 17 C -0.03 0.15 9.68 83.49 0.81 0.96 16 18 C -0.07 -0.10 12.05 83.73 1.01 0.90 16 19 N -0.32 -3.38 12.41 -58.25 -0.72 -4.11 16 20 N -0.13 -1.13 13.16 37.02 0.49 -0.64 16 21 C -0.12 1.46 7.44 31.12 0.23 1.69 16 22 S 0.12 -0.21 22.32 -56.49 -1.26 -1.47 16 23 H 0.06 -0.17 8.14 -2.39 -0.02 -0.18 16 24 H 0.07 0.00 8.14 -2.38 -0.02 -0.02 16 25 H 0.08 -0.18 6.39 -2.39 -0.02 -0.19 16 26 H 0.13 -0.06 7.96 -2.38 -0.02 -0.08 16 27 H 0.38 -1.24 8.13 -74.05 -0.60 -1.84 16 28 H -0.31 -2.51 7.11 99.48 0.71 -1.80 16 29 H -0.29 -2.16 7.11 99.48 0.71 -1.45 16 30 H 0.42 -4.26 8.60 -92.71 -0.80 -5.05 16 31 H 0.09 -1.21 7.84 -2.38 -0.02 -1.23 16 32 H 0.07 -0.81 8.14 -2.39 -0.02 -0.83 16 33 H 0.09 -1.45 6.99 -2.39 -0.02 -1.47 16 34 H 0.13 -2.33 7.90 -2.39 -0.02 -2.35 16 35 H 0.23 -3.16 6.73 -2.91 -0.02 -3.18 16 36 H 0.21 -0.99 8.06 -2.91 -0.02 -1.01 16 37 H 0.13 -2.10 8.10 -2.39 -0.02 -2.12 16 38 H 0.07 -0.46 8.14 -2.39 -0.02 -0.48 16 Total: 0.00 -23.49 329.30 -0.26 -23.75 By element: Atomic # 1 Polarization: -25.75 SS G_CDS: -0.25 Total: -26.00 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: 5.65 Total: 7.47 kcal Atomic # 7 Polarization: -0.12 SS G_CDS: -5.08 Total: -5.21 kcal Atomic # 8 Polarization: -0.73 SS G_CDS: -1.52 Total: -2.24 kcal Atomic # 14 Polarization: 1.51 SS G_CDS: 2.20 Total: 3.71 kcal Atomic # 16 Polarization: -0.21 SS G_CDS: -1.26 Total: -1.47 kcal Total: -23.49 -0.26 -23.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16945872_15704122.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.626 kcal (2) G-P(sol) polarization free energy of solvation -23.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 155.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 154.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds