Wall clock time and date at job start Mon Mar 8 2021 06:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86297 * 109.47101 * 2 1 4 4 C 1.50694 * 109.47441 * 120.00457 * 2 1 3 5 5 C 1.38840 * 120.33760 * 64.97703 * 4 2 1 6 6 C 1.38345 * 118.50543 * 179.76968 * 5 4 2 7 7 C 1.39099 * 119.09388 * 0.51450 * 6 5 4 8 8 N 1.39011 * 119.70139 * 179.74887 * 7 6 5 9 9 C 1.46503 * 120.00129 * 359.72726 * 8 7 6 10 10 C 1.52992 * 109.47166 * 180.02562 * 9 8 7 11 11 H 1.09004 * 112.90752 * 316.24725 * 10 9 8 12 12 C 1.53784 * 113.61673 * 87.50094 * 10 9 8 13 13 C 1.53778 * 87.08081 * 139.98135 * 12 10 9 14 14 H 1.08999 * 113.61526 * 220.02035 * 13 12 10 15 15 N 1.46498 * 113.61736 * 89.11728 * 13 12 10 16 16 C 1.36883 * 126.40076 * 142.21481 * 15 13 12 17 17 C 1.34667 * 106.81747 * 179.84569 * 16 15 13 18 18 N 1.34122 * 108.02220 * 0.41989 * 17 16 15 19 19 C 1.30500 * 109.25530 * 359.73370 * 18 17 16 20 20 C 1.53778 * 87.08449 * 334.56700 * 13 12 10 21 21 N 1.32422 * 120.59382 * 359.47261 * 7 6 5 22 22 C 1.31946 * 121.62220 * 0.25829 * 21 7 6 23 23 H 0.96700 * 113.99125 * 299.99620 * 1 2 3 24 24 H 1.09003 * 109.46426 * 240.00642 * 2 1 3 25 25 H 1.48504 * 110.00236 * 300.00374 * 3 2 1 26 26 H 1.48495 * 110.00222 * 61.32188 * 3 2 1 27 27 H 1.07997 * 120.74577 * 0.04302 * 5 4 2 28 28 H 1.07998 * 120.45166 * 180.26111 * 6 5 4 29 29 H 0.97004 * 119.99842 * 179.72680 * 8 7 6 30 30 H 1.08996 * 109.47072 * 59.99555 * 9 8 7 31 31 H 1.09007 * 109.46579 * 299.99721 * 9 8 7 32 32 H 1.08993 * 113.61313 * 254.52732 * 12 10 9 33 33 H 1.09000 * 113.61578 * 25.43464 * 12 10 9 34 34 H 1.07999 * 126.59043 * 359.97438 * 16 15 13 35 35 H 1.07999 * 125.98863 * 180.18997 * 17 16 15 36 36 H 1.08006 * 125.65079 * 180.02562 * 19 18 17 37 37 H 1.08998 * 113.61879 * 270.88747 * 20 13 12 38 38 H 1.08997 * 113.69304 * 139.98833 * 20 13 12 39 39 H 1.07998 * 119.57165 * 180.02562 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7105 1.2303 5 6 1.6874 -2.0659 1.4062 6 6 2.1702 -2.6810 2.5475 7 6 2.8704 -1.9226 3.4799 8 7 3.3566 -2.5268 4.6336 9 6 3.1254 -3.9547 4.8660 10 6 3.7584 -4.3637 6.1975 11 1 4.7548 -3.9453 6.3398 12 6 2.8293 -4.1677 7.4072 13 6 3.3722 -5.5039 7.9409 14 1 2.6094 -6.1330 8.3998 15 7 4.5694 -5.3606 8.7729 16 6 4.8690 -6.0828 9.8965 17 6 6.0568 -5.6327 10.3438 18 7 6.4668 -4.6557 9.5213 19 6 5.5808 -4.4873 8.5780 20 6 3.6780 -5.8733 6.4798 21 7 3.0827 -0.6316 3.2758 22 6 2.6387 -0.0200 2.1943 23 1 -0.3932 0.4417 0.7651 24 1 1.7922 -0.5138 -0.8901 25 1 1.5614 2.4680 -1.2085 26 1 1.5880 2.4585 1.2242 27 1 1.1369 -2.6283 0.6666 28 1 2.0021 -3.7347 2.7141 29 1 3.8489 -2.0028 5.2849 30 1 3.5742 -4.5316 4.0575 31 1 2.0533 -4.1484 4.8991 32 1 3.0937 -3.3106 8.0263 33 1 1.7697 -4.1972 7.1533 34 1 4.2692 -6.8649 10.3380 35 1 6.5848 -5.9924 11.2145 36 1 5.6460 -3.7687 7.7743 37 1 2.8504 -6.3689 5.9723 38 1 4.6270 -6.3930 6.3489 39 1 2.8312 1.0344 2.0613 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_16945876_13915762.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:58:02 Heat of formation + Delta-G solvation = 113.850607 kcal Electronic energy + Delta-G solvation = -21630.425870 eV Core-core repulsion = 18349.122551 eV Total energy + Delta-G solvation = -3281.303320 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 287.137 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.27967 -41.43950 -40.33481 -38.16817 -36.58827 -33.69106 -33.31398 -31.68772 -30.29437 -28.94530 -27.21332 -26.20764 -25.12457 -24.37279 -22.51749 -22.45397 -21.68230 -21.08802 -18.76907 -18.60686 -18.00967 -17.67119 -16.64231 -16.50076 -16.37404 -16.26689 -16.17075 -15.64560 -15.47814 -15.21625 -14.83752 -14.64845 -14.43042 -14.30411 -14.04231 -13.86104 -13.71959 -13.37732 -13.28245 -12.48058 -12.31616 -11.98641 -11.96936 -11.89132 -11.22627 -10.88416 -10.77007 -10.56588 -10.55106 -10.38814 -9.46960 -8.78017 -4.96033 0.21788 0.39443 1.05101 1.29258 1.58482 1.64786 1.94511 1.97294 2.27005 2.82237 2.92138 3.05574 3.26429 3.34066 3.39236 3.57719 3.59577 3.75088 3.81991 3.90891 3.96308 3.98694 4.06127 4.19636 4.25582 4.30655 4.37441 4.38320 4.51570 4.53935 4.56419 4.60753 4.71564 4.77444 4.90749 4.96925 5.25723 5.29372 5.46138 5.80176 5.91748 6.20273 6.40267 6.44551 7.12062 7.14936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.532 6.532 2 C -0.059 4.059 3 Si 0.680 3.320 4 C -0.233 4.233 5 C -0.005 4.005 6 C -0.239 4.239 7 C 0.407 3.593 8 N -0.723 5.723 9 C 0.139 3.861 10 C -0.129 4.129 11 H 0.103 0.897 12 C -0.139 4.139 13 C 0.105 3.895 14 H 0.115 0.885 15 N -0.443 5.443 16 C -0.053 4.053 17 C -0.029 4.029 18 N -0.492 5.492 19 C 0.178 3.822 20 C -0.134 4.134 21 N -0.539 5.539 22 C 0.156 3.844 23 H 0.375 0.625 24 H 0.116 0.884 25 H -0.256 1.256 26 H -0.258 1.258 27 H 0.135 0.865 28 H 0.132 0.868 29 H 0.406 0.594 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.106 0.894 34 H 0.175 0.825 35 H 0.171 0.829 36 H 0.201 0.799 37 H 0.107 0.893 38 H 0.083 0.917 39 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.053 -3.483 -0.654 4.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.338 6.338 2 C -0.170 4.170 3 Si 0.581 3.419 4 C -0.238 4.238 5 C -0.031 4.031 6 C -0.264 4.264 7 C 0.171 3.829 8 N -0.356 5.356 9 C 0.014 3.986 10 C -0.148 4.148 11 H 0.121 0.879 12 C -0.177 4.177 13 C 0.001 3.999 14 H 0.133 0.867 15 N -0.126 5.126 16 C -0.186 4.186 17 C -0.177 4.177 18 N -0.210 5.210 19 C -0.104 4.104 20 C -0.173 4.173 21 N -0.256 5.256 22 C -0.002 4.002 23 H 0.223 0.777 24 H 0.134 0.866 25 H -0.181 1.181 26 H -0.183 1.183 27 H 0.153 0.847 28 H 0.150 0.850 29 H 0.242 0.758 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.101 0.899 33 H 0.125 0.875 34 H 0.192 0.808 35 H 0.188 0.812 36 H 0.217 0.783 37 H 0.125 0.875 38 H 0.102 0.898 39 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -1.141 -2.287 -0.548 2.614 hybrid contribution -2.101 -0.984 0.148 2.325 sum -3.242 -3.271 -0.400 4.623 Atomic orbital electron populations 1.86597 1.17981 1.79936 1.49305 1.24757 0.83673 1.10607 0.97977 0.95083 0.91691 0.74695 0.80417 1.20927 1.06963 0.95984 0.99961 1.21200 0.93042 0.93433 0.95389 1.21438 1.06831 1.01252 0.96873 1.18379 0.89285 0.88497 0.86700 1.44462 1.60930 1.09221 1.21001 1.21395 1.00203 0.80525 0.96428 1.23019 1.00328 0.97233 0.94205 0.87915 1.23497 1.00762 0.96734 0.96677 1.22299 0.86203 0.99926 0.91514 0.86722 1.45278 1.17365 1.28721 1.21269 1.22776 1.01085 1.02902 0.91805 1.22380 0.95420 0.97962 1.01902 1.70351 1.27962 1.17900 1.04783 1.25020 0.85860 0.97884 1.01639 1.23365 1.04237 0.95684 0.93967 1.67161 1.25723 1.09034 1.23640 1.22289 0.91278 0.99062 0.87597 0.77743 0.86577 1.18057 1.18325 0.84671 0.85001 0.75804 0.91275 0.91353 0.89945 0.87532 0.80803 0.81194 0.78256 0.87494 0.89821 0.82777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.52 12.84 -35.23 -0.45 -0.97 16 2 C -0.06 0.03 2.82 36.00 0.10 0.13 16 3 Si 0.68 -0.71 29.91 -169.99 -5.08 -5.79 16 4 C -0.23 -0.05 5.36 -104.46 -0.56 -0.61 16 5 C 0.00 0.00 9.83 -39.32 -0.39 -0.39 16 6 C -0.24 0.04 9.33 -39.22 -0.37 -0.33 16 7 C 0.41 0.34 7.65 -155.01 -1.19 -0.84 16 8 N -0.72 1.14 5.73 -60.42 -0.35 0.79 16 9 C 0.14 -0.55 4.73 -4.04 -0.02 -0.57 16 10 C -0.13 0.60 3.25 -89.81 -0.29 0.31 16 11 H 0.10 -0.43 5.64 -51.93 -0.29 -0.72 16 12 C -0.14 0.61 7.05 -25.92 -0.18 0.43 16 13 C 0.10 -0.39 4.88 -67.12 -0.33 -0.72 16 14 H 0.11 -0.55 8.14 -51.93 -0.42 -0.97 16 15 N -0.44 0.29 2.94 -110.60 -0.33 -0.03 16 16 C -0.05 -0.01 11.58 -16.56 -0.19 -0.20 16 17 C -0.03 -0.07 11.87 -17.82 -0.21 -0.28 16 18 N -0.49 -2.06 11.25 -14.67 -0.16 -2.22 16 19 C 0.18 0.19 11.19 -90.38 -1.01 -0.83 16 20 C -0.13 0.63 7.35 -25.92 -0.19 0.44 16 21 N -0.54 -1.22 10.39 -12.43 -0.13 -1.35 16 22 C 0.16 0.14 9.84 -17.56 -0.17 -0.03 16 23 H 0.38 -0.62 8.70 45.56 0.40 -0.23 16 24 H 0.12 -0.14 7.96 -51.93 -0.41 -0.56 16 25 H -0.26 -0.58 7.11 56.52 0.40 -0.17 16 26 H -0.26 -0.22 7.01 56.52 0.40 0.18 16 27 H 0.14 -0.15 8.06 -52.49 -0.42 -0.57 16 28 H 0.13 -0.28 6.71 -52.49 -0.35 -0.63 16 29 H 0.41 -0.73 8.60 -40.82 -0.35 -1.08 16 30 H 0.07 -0.27 7.92 -51.93 -0.41 -0.69 16 31 H 0.07 -0.30 7.64 -51.93 -0.40 -0.70 16 32 H 0.08 -0.26 8.02 -51.93 -0.42 -0.67 16 33 H 0.11 -0.56 7.89 -51.93 -0.41 -0.97 16 34 H 0.17 -0.46 8.06 -52.49 -0.42 -0.89 16 35 H 0.17 0.08 8.06 -52.49 -0.42 -0.35 16 36 H 0.20 -0.33 5.86 -52.48 -0.31 -0.63 16 37 H 0.11 -0.66 8.10 -51.93 -0.42 -1.08 16 38 H 0.08 -0.28 8.14 -51.93 -0.42 -0.70 16 39 H 0.16 -0.12 4.85 -52.49 -0.25 -0.38 16 LS Contribution 322.24 15.07 4.86 4.86 Total: 0.00 -8.43 322.24 -11.59 -20.01 By element: Atomic # 1 Polarization: -6.87 SS G_CDS: -4.95 Total: -11.82 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: -5.00 Total: -3.47 kcal Atomic # 7 Polarization: -1.85 SS G_CDS: -0.97 Total: -2.82 kcal Atomic # 8 Polarization: -0.52 SS G_CDS: -0.45 Total: -0.97 kcal Atomic # 14 Polarization: -0.71 SS G_CDS: -5.08 Total: -5.79 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -8.43 -11.59 -20.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16945876_13915762.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.863 kcal (2) G-P(sol) polarization free energy of solvation -8.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds