Wall clock time and date at job start Mon Mar 8 2021 06:58:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86297 * 109.47101 * 2 1 4 4 C 1.50694 * 109.47441 * 120.00457 * 2 1 3 5 5 C 1.38840 * 120.33760 * 64.97703 * 4 2 1 6 6 C 1.38345 * 118.50543 * 179.76968 * 5 4 2 7 7 C 1.39099 * 119.09388 * 0.51450 * 6 5 4 8 8 N 1.39011 * 119.70139 * 179.74887 * 7 6 5 9 9 C 1.46503 * 120.00129 * 359.72726 * 8 7 6 10 10 C 1.52992 * 109.47166 * 180.02562 * 9 8 7 11 11 H 1.09004 * 112.90752 * 316.24725 * 10 9 8 12 12 C 1.53784 * 113.61673 * 87.50094 * 10 9 8 13 13 C 1.53778 * 87.08081 * 139.98135 * 12 10 9 14 14 H 1.08999 * 113.61526 * 220.02035 * 13 12 10 15 15 N 1.46498 * 113.61736 * 89.11728 * 13 12 10 16 16 C 1.36883 * 126.40076 * 142.21481 * 15 13 12 17 17 C 1.34667 * 106.81747 * 179.84569 * 16 15 13 18 18 N 1.34122 * 108.02220 * 0.41989 * 17 16 15 19 19 C 1.30500 * 109.25530 * 359.73370 * 18 17 16 20 20 C 1.53778 * 87.08449 * 334.56700 * 13 12 10 21 21 N 1.32422 * 120.59382 * 359.47261 * 7 6 5 22 22 C 1.31946 * 121.62220 * 0.25829 * 21 7 6 23 23 H 0.96700 * 113.99125 * 299.99620 * 1 2 3 24 24 H 1.09003 * 109.46426 * 240.00642 * 2 1 3 25 25 H 1.48504 * 110.00236 * 300.00374 * 3 2 1 26 26 H 1.48495 * 110.00222 * 61.32188 * 3 2 1 27 27 H 1.07997 * 120.74577 * 0.04302 * 5 4 2 28 28 H 1.07998 * 120.45166 * 180.26111 * 6 5 4 29 29 H 0.97004 * 119.99842 * 179.72680 * 8 7 6 30 30 H 1.08996 * 109.47072 * 59.99555 * 9 8 7 31 31 H 1.09007 * 109.46579 * 299.99721 * 9 8 7 32 32 H 1.08993 * 113.61313 * 254.52732 * 12 10 9 33 33 H 1.09000 * 113.61578 * 25.43464 * 12 10 9 34 34 H 1.07999 * 126.59043 * 359.97438 * 16 15 13 35 35 H 1.07999 * 125.98863 * 180.18997 * 17 16 15 36 36 H 1.08006 * 125.65079 * 180.02562 * 19 18 17 37 37 H 1.08998 * 113.61879 * 270.88747 * 20 13 12 38 38 H 1.08997 * 113.69304 * 139.98833 * 20 13 12 39 39 H 1.07998 * 119.57165 * 180.02562 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7105 1.2303 5 6 1.6874 -2.0659 1.4062 6 6 2.1702 -2.6810 2.5475 7 6 2.8704 -1.9226 3.4799 8 7 3.3566 -2.5268 4.6336 9 6 3.1254 -3.9547 4.8660 10 6 3.7584 -4.3637 6.1975 11 1 4.7548 -3.9453 6.3398 12 6 2.8293 -4.1677 7.4072 13 6 3.3722 -5.5039 7.9409 14 1 2.6094 -6.1330 8.3998 15 7 4.5694 -5.3606 8.7729 16 6 4.8690 -6.0828 9.8965 17 6 6.0568 -5.6327 10.3438 18 7 6.4668 -4.6557 9.5213 19 6 5.5808 -4.4873 8.5780 20 6 3.6780 -5.8733 6.4798 21 7 3.0827 -0.6316 3.2758 22 6 2.6387 -0.0200 2.1943 23 1 -0.3932 0.4417 0.7651 24 1 1.7922 -0.5138 -0.8901 25 1 1.5614 2.4680 -1.2085 26 1 1.5880 2.4585 1.2242 27 1 1.1369 -2.6283 0.6666 28 1 2.0021 -3.7347 2.7141 29 1 3.8489 -2.0028 5.2849 30 1 3.5742 -4.5316 4.0575 31 1 2.0533 -4.1484 4.8991 32 1 3.0937 -3.3106 8.0263 33 1 1.7697 -4.1972 7.1533 34 1 4.2692 -6.8649 10.3380 35 1 6.5848 -5.9924 11.2145 36 1 5.6460 -3.7687 7.7743 37 1 2.8504 -6.3689 5.9723 38 1 4.6270 -6.3930 6.3489 39 1 2.8312 1.0344 2.0613 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_16945876_13915762.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:58:01 Heat of formation + Delta-G solvation = 115.989287 kcal Electronic energy + Delta-G solvation = -21630.333130 eV Core-core repulsion = 18349.122551 eV Total energy + Delta-G solvation = -3281.210580 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 287.137 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.22741 -41.38969 -40.10174 -38.14420 -36.47428 -33.65117 -33.28534 -31.61908 -30.30242 -28.76447 -26.85533 -26.12909 -25.01297 -24.27651 -22.47481 -22.41141 -21.58326 -20.90339 -18.67033 -18.57471 -17.79457 -17.60174 -16.45032 -16.44395 -16.23828 -16.18968 -16.05347 -15.54303 -15.39483 -15.12063 -14.84003 -14.48999 -14.37314 -14.29596 -13.98680 -13.60690 -13.47532 -13.29264 -13.12901 -12.45786 -12.08059 -11.95499 -11.70819 -11.62646 -11.09332 -10.93657 -10.73704 -10.53973 -10.53307 -10.38598 -9.49580 -8.68240 -4.90973 0.24379 0.42014 1.07467 1.34029 1.59839 1.79400 1.96053 2.12311 2.18025 2.84365 3.24240 3.38361 3.46759 3.58392 3.65367 3.67084 3.71233 3.79766 3.95906 4.04404 4.13742 4.20821 4.24551 4.38635 4.51145 4.58255 4.60728 4.66525 4.69123 4.72469 4.78520 4.79241 4.90553 4.95788 5.02494 5.24537 5.32092 5.34269 5.54538 5.79657 6.04499 6.26994 6.50310 6.54038 7.11331 7.16439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.549 6.549 2 C -0.061 4.061 3 Si 0.754 3.246 4 C -0.235 4.235 5 C -0.012 4.012 6 C -0.240 4.240 7 C 0.394 3.606 8 N -0.721 5.721 9 C 0.140 3.860 10 C -0.123 4.123 11 H 0.095 0.905 12 C -0.132 4.132 13 C 0.096 3.904 14 H 0.133 0.867 15 N -0.439 5.439 16 C -0.046 4.046 17 C -0.064 4.064 18 N -0.542 5.542 19 C 0.172 3.828 20 C -0.124 4.124 21 N -0.568 5.568 22 C 0.144 3.856 23 H 0.384 0.616 24 H 0.126 0.874 25 H -0.301 1.301 26 H -0.284 1.284 27 H 0.146 0.854 28 H 0.152 0.848 29 H 0.405 0.595 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.068 0.932 33 H 0.121 0.879 34 H 0.203 0.797 35 H 0.175 0.825 36 H 0.218 0.782 37 H 0.129 0.871 38 H 0.070 0.930 39 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.160 -4.771 -1.025 5.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.357 6.357 2 C -0.172 4.172 3 Si 0.660 3.340 4 C -0.240 4.240 5 C -0.038 4.038 6 C -0.265 4.265 7 C 0.157 3.843 8 N -0.353 5.353 9 C 0.016 3.984 10 C -0.142 4.142 11 H 0.113 0.887 12 C -0.170 4.170 13 C -0.007 4.007 14 H 0.150 0.850 15 N -0.121 5.121 16 C -0.179 4.179 17 C -0.211 4.211 18 N -0.261 5.261 19 C -0.111 4.111 20 C -0.162 4.162 21 N -0.286 5.286 22 C -0.014 4.014 23 H 0.233 0.767 24 H 0.144 0.856 25 H -0.229 1.229 26 H -0.211 1.211 27 H 0.164 0.836 28 H 0.170 0.830 29 H 0.241 0.759 30 H 0.091 0.909 31 H 0.098 0.902 32 H 0.087 0.913 33 H 0.139 0.861 34 H 0.220 0.780 35 H 0.193 0.807 36 H 0.234 0.766 37 H 0.147 0.853 38 H 0.089 0.911 39 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -2.250 -3.604 -0.908 4.345 hybrid contribution -1.794 -0.580 0.269 1.904 sum -4.044 -4.184 -0.640 5.854 Atomic orbital electron populations 1.86566 1.18735 1.80272 1.50117 1.24866 0.83113 1.10966 0.98216 0.94194 0.90592 0.72802 0.76416 1.20939 1.06929 0.96235 0.99899 1.21423 0.93064 0.93490 0.95800 1.21654 1.06234 1.02153 0.96427 1.18664 0.89636 0.88370 0.87594 1.44617 1.60345 1.10079 1.20243 1.21516 1.00977 0.79158 0.96710 1.22937 0.99896 0.97461 0.93889 0.88676 1.23485 1.01515 0.95742 0.96262 1.22599 0.85399 1.00831 0.91860 0.84950 1.45464 1.17724 1.27759 1.21144 1.23199 1.00434 1.02747 0.91506 1.22674 0.96939 0.98762 1.02746 1.70273 1.29989 1.19480 1.06380 1.25319 0.85925 0.98351 1.01464 1.23354 1.04406 0.95309 0.93133 1.67155 1.26863 1.10081 1.24455 1.22469 0.91617 0.99592 0.87684 0.76666 0.85648 1.22897 1.21088 0.83580 0.83006 0.75935 0.90892 0.90165 0.91332 0.86074 0.78005 0.80739 0.76630 0.85297 0.91116 0.82023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -1.01 12.84 -148.98 -1.91 -2.93 16 2 C -0.06 0.07 2.82 71.23 0.20 0.27 16 3 Si 0.75 -1.16 29.91 68.60 2.05 0.89 16 4 C -0.23 -0.06 5.36 -19.76 -0.11 -0.16 16 5 C -0.01 0.01 9.83 22.44 0.22 0.23 16 6 C -0.24 0.31 9.33 22.50 0.21 0.52 16 7 C 0.39 0.55 7.65 133.05 1.02 1.57 16 8 N -0.72 2.61 5.73 -345.08 -1.98 0.63 16 9 C 0.14 -1.32 4.73 86.38 0.41 -0.91 16 10 C -0.12 1.28 3.25 -10.27 -0.03 1.24 16 11 H 0.10 -0.81 5.64 -2.39 -0.01 -0.83 16 12 C -0.13 1.34 7.05 31.12 0.22 1.56 16 13 C 0.10 -0.85 4.88 45.52 0.22 -0.63 16 14 H 0.13 -1.60 8.14 -2.39 -0.02 -1.62 16 15 N -0.44 0.71 2.94 -503.81 -1.48 -0.77 16 16 C -0.05 -0.01 11.58 83.09 0.96 0.96 16 17 C -0.06 -0.38 11.87 83.52 0.99 0.61 16 18 N -0.54 -5.41 11.25 -200.31 -2.25 -7.66 16 19 C 0.17 0.49 11.19 180.26 2.02 2.51 16 20 C -0.12 1.38 7.35 31.12 0.23 1.61 16 21 N -0.57 -2.80 10.39 -193.25 -2.01 -4.81 16 22 C 0.14 0.31 9.84 84.64 0.83 1.14 16 23 H 0.38 -1.22 8.70 -74.06 -0.64 -1.87 16 24 H 0.13 -0.38 7.96 -2.39 -0.02 -0.40 16 25 H -0.30 -1.81 7.11 99.48 0.71 -1.10 16 26 H -0.28 -0.73 7.01 99.48 0.70 -0.03 16 27 H 0.15 -0.48 8.06 -2.91 -0.02 -0.50 16 28 H 0.15 -0.93 6.71 -2.91 -0.02 -0.95 16 29 H 0.41 -1.40 8.60 -92.70 -0.80 -2.19 16 30 H 0.07 -0.70 7.92 -2.39 -0.02 -0.72 16 31 H 0.08 -0.91 7.64 -2.38 -0.02 -0.92 16 32 H 0.07 -0.45 8.02 -2.39 -0.02 -0.47 16 33 H 0.12 -1.54 7.89 -2.39 -0.02 -1.55 16 34 H 0.20 -1.36 8.06 -2.91 -0.02 -1.39 16 35 H 0.18 0.47 8.06 -2.91 -0.02 0.45 16 36 H 0.22 -0.52 5.86 -2.91 -0.02 -0.54 16 37 H 0.13 -1.96 8.10 -2.39 -0.02 -1.98 16 38 H 0.07 -0.54 8.14 -2.39 -0.02 -0.56 16 39 H 0.16 -0.16 4.85 -2.91 -0.01 -0.17 16 Total: 0.00 -20.98 322.24 -0.52 -21.50 By element: Atomic # 1 Polarization: -17.03 SS G_CDS: -0.32 Total: -17.35 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: 7.39 Total: 10.51 kcal Atomic # 7 Polarization: -4.89 SS G_CDS: -7.72 Total: -12.61 kcal Atomic # 8 Polarization: -1.01 SS G_CDS: -1.91 Total: -2.93 kcal Atomic # 14 Polarization: -1.16 SS G_CDS: 2.05 Total: 0.89 kcal Total: -20.98 -0.52 -21.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16945876_13915762.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.489 kcal (2) G-P(sol) polarization free energy of solvation -20.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds