Wall clock time and date at job start Mon Mar 8 2021 06:58:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86298 * 109.47261 * 2 1 4 4 C 1.50698 * 109.46837 * 239.99355 * 2 1 3 5 5 C 1.33320 * 125.95578 * 300.02878 * 4 2 1 6 6 N 1.32119 * 114.58192 * 180.02562 * 5 4 2 7 7 C 1.29689 * 116.86486 * 359.97438 * 6 5 4 8 8 N 1.38609 * 124.94704 * 180.02562 * 7 6 5 9 9 C 1.46501 * 120.00319 * 359.95720 * 8 7 6 10 10 C 1.53001 * 109.47056 * 180.02562 * 9 8 7 11 11 H 1.08997 * 112.84893 * 43.80497 * 10 9 8 12 12 C 1.53785 * 113.61294 * 175.00159 * 10 9 8 13 13 C 1.53775 * 87.08220 * 139.98033 * 12 10 9 14 14 H 1.08998 * 113.61359 * 219.93605 * 13 12 10 15 15 N 1.46498 * 113.61406 * 89.11547 * 13 12 10 16 16 C 1.36888 * 126.39605 * 119.71550 * 15 13 12 17 17 C 1.34675 * 106.81447 * 179.83878 * 16 15 13 18 18 N 1.34131 * 108.01954 * 0.42530 * 17 16 15 19 19 C 1.30498 * 109.25892 * 359.72624 * 18 17 16 20 20 C 1.53781 * 113.61493 * 272.49717 * 10 9 8 21 21 S 1.70961 * 110.10144 * 359.97438 * 7 6 5 22 22 H 0.96706 * 114.00177 * 59.99895 * 1 2 3 23 23 H 1.09000 * 109.46772 * 120.00045 * 2 1 3 24 24 H 1.48500 * 109.99801 * 298.67743 * 3 2 1 25 25 H 1.48493 * 110.00101 * 59.99765 * 3 2 1 26 26 H 1.07998 * 122.71380 * 359.97438 * 5 4 2 27 27 H 0.97006 * 119.99981 * 179.97438 * 8 7 6 28 28 H 1.08997 * 109.47116 * 300.00354 * 9 8 7 29 29 H 1.08997 * 109.46934 * 60.00108 * 9 8 7 30 30 H 1.08997 * 113.61418 * 254.53098 * 12 10 9 31 31 H 1.09006 * 113.61409 * 25.42745 * 12 10 9 32 32 H 1.07998 * 126.59009 * 359.97438 * 16 15 13 33 33 H 1.07998 * 125.98672 * 180.11089 * 17 16 15 34 34 H 1.07994 * 125.65340 * 179.97438 * 19 18 17 35 35 H 1.09002 * 113.61533 * 334.56421 * 20 10 9 36 36 H 1.08994 * 113.61520 * 105.47241 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9312 -0.7105 -1.2304 5 6 1.6829 -1.9788 -1.5581 6 7 2.2380 -2.3726 -2.6905 7 6 2.9431 -1.4946 -3.3340 8 7 3.5965 -1.7262 -4.5343 9 6 3.5191 -3.0448 -5.1680 10 6 4.3219 -3.0326 -6.4704 11 1 5.2866 -2.5357 -6.3683 12 6 4.4063 -4.4071 -7.1549 13 6 4.2235 -3.6660 -8.4898 14 1 3.5732 -4.1866 -9.1927 15 7 5.4837 -3.2300 -9.0963 16 6 5.9675 -3.6034 -10.3212 17 6 7.1454 -2.9710 -10.4841 18 7 7.3788 -2.2390 -9.3846 19 6 6.3877 -2.3892 -8.5491 20 6 3.5109 -2.5629 -7.6896 21 16 2.9480 -0.0097 -2.4868 22 1 -0.3934 0.4417 -0.7651 23 1 1.7922 -0.5138 0.8900 24 1 1.5880 2.4585 -1.2243 25 1 1.5615 2.4679 1.2084 26 1 1.0777 -2.6318 -0.9469 27 1 4.1053 -1.0152 -4.9546 28 1 3.9311 -3.7963 -4.4946 29 1 2.4778 -3.2831 -5.3848 30 1 5.3794 -4.8872 -7.0517 31 1 3.5776 -5.0702 -6.9065 32 1 5.4945 -4.2742 -11.0230 33 1 7.7913 -3.0447 -11.3465 34 1 6.3045 -1.9194 -7.5802 35 1 2.4374 -2.7218 -7.5875 36 1 3.7611 -1.5542 -8.0182 There are 50 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 50 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_16945876_15704118.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:58:04 Heat of formation + Delta-G solvation = 121.292068 kcal Electronic energy + Delta-G solvation = -20240.724900 eV Core-core repulsion = 17048.896513 eV Total energy + Delta-G solvation = -3191.828387 eV No. of doubly occupied orbitals = 50 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.28075 -40.84717 -40.22414 -38.10788 -36.59357 -33.48402 -31.51600 -30.31882 -29.25884 -27.20874 -26.45539 -25.22580 -24.05911 -22.47562 -21.88202 -21.17305 -20.74786 -19.75310 -18.25283 -17.99904 -17.24209 -16.77041 -16.49543 -16.35654 -16.07896 -15.93308 -15.78914 -15.33798 -14.99222 -14.85123 -14.70229 -14.46446 -13.88233 -13.84235 -13.70932 -13.35134 -12.92050 -12.38047 -12.30728 -12.07719 -11.97164 -11.89868 -11.25184 -10.92583 -10.89454 -10.56708 -10.28704 -10.21214 -9.47732 -8.78536 -5.07201 -0.05502 0.00878 0.67033 1.04640 1.23183 1.54139 1.64720 1.89209 2.00634 2.03306 2.25991 2.93392 3.05781 3.28808 3.31724 3.34333 3.58344 3.68982 3.82677 3.90700 3.96509 3.99239 4.24097 4.30414 4.42550 4.50101 4.51690 4.52380 4.57779 4.66505 4.72307 4.77651 4.91397 5.06596 5.28948 5.74151 5.79512 5.95482 6.19693 6.33573 6.96805 7.13832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.526 6.526 2 C -0.017 4.017 3 Si 0.654 3.346 4 C -0.304 4.304 5 C 0.118 3.882 6 N -0.551 5.551 7 C 0.324 3.676 8 N -0.693 5.693 9 C 0.147 3.853 10 C -0.132 4.132 11 H 0.102 0.898 12 C -0.133 4.133 13 C 0.105 3.895 14 H 0.115 0.885 15 N -0.443 5.443 16 C -0.053 4.053 17 C -0.029 4.029 18 N -0.492 5.492 19 C 0.177 3.823 20 C -0.139 4.139 21 S 0.090 5.910 22 H 0.377 0.623 23 H 0.125 0.875 24 H -0.244 1.244 25 H -0.237 1.237 26 H 0.176 0.824 27 H 0.414 0.586 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.108 0.892 32 H 0.175 0.825 33 H 0.171 0.829 34 H 0.201 0.799 35 H 0.107 0.893 36 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.691 -0.933 -1.239 1.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.332 6.332 2 C -0.130 4.130 3 Si 0.553 3.447 4 C -0.427 4.427 5 C -0.033 4.033 6 N -0.276 5.276 7 C -0.047 4.047 8 N -0.333 5.333 9 C 0.021 3.979 10 C -0.151 4.151 11 H 0.120 0.880 12 C -0.171 4.171 13 C 0.000 4.000 14 H 0.133 0.867 15 N -0.126 5.126 16 C -0.185 4.185 17 C -0.177 4.177 18 N -0.210 5.210 19 C -0.105 4.105 20 C -0.177 4.177 21 S 0.339 5.661 22 H 0.224 0.776 23 H 0.143 0.857 24 H -0.168 1.168 25 H -0.161 1.161 26 H 0.193 0.807 27 H 0.252 0.748 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.102 0.898 31 H 0.126 0.874 32 H 0.192 0.808 33 H 0.188 0.812 34 H 0.217 0.783 35 H 0.125 0.875 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.133 0.318 -0.981 1.040 hybrid contribution -2.021 -1.065 -0.412 2.322 sum -1.889 -0.747 -1.394 2.463 Atomic orbital electron populations 1.86617 1.17497 1.79903 1.49223 1.24076 0.83458 1.09798 0.95706 0.95193 0.91681 0.75237 0.82573 1.25529 1.13207 0.99258 1.04707 1.21324 0.97149 0.93068 0.91719 1.66488 1.17084 1.33584 1.10494 1.23729 0.95181 0.93485 0.92276 1.43988 1.54915 1.14804 1.19632 1.21373 1.00360 0.83883 0.92264 1.23070 0.99870 0.98434 0.93710 0.88039 1.23356 1.04534 0.96178 0.93060 1.22313 0.84050 0.97925 0.95683 0.86707 1.45287 1.16999 1.35436 1.14871 1.22786 0.99119 1.07027 0.89572 1.22380 0.96979 0.99658 0.98670 1.70347 1.24891 1.22940 1.02842 1.24994 0.87058 0.97455 1.00985 1.23504 1.00686 0.98997 0.94493 1.84027 1.51417 1.13450 1.17248 0.77554 0.85702 1.16767 1.16080 0.80710 0.74844 0.90904 0.90930 0.89832 0.87398 0.80799 0.81195 0.78306 0.87464 0.90007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.46 12.87 -35.23 -0.45 -0.91 16 2 C -0.02 0.01 2.99 36.00 0.11 0.11 16 3 Si 0.65 -0.52 31.05 -169.99 -5.28 -5.80 16 4 C -0.30 -0.11 5.74 -36.03 -0.21 -0.32 16 5 C 0.12 0.17 11.22 -19.15 -0.21 -0.04 16 6 N -0.55 -1.26 10.14 -15.21 -0.15 -1.42 16 7 C 0.32 0.15 8.09 -87.68 -0.71 -0.56 16 8 N -0.69 1.48 5.71 -62.30 -0.36 1.13 16 9 C 0.15 -0.43 5.79 -4.04 -0.02 -0.45 16 10 C -0.13 0.60 3.25 -89.80 -0.29 0.31 16 11 H 0.10 -0.47 5.64 -51.93 -0.29 -0.77 16 12 C -0.13 0.57 7.35 -25.92 -0.19 0.38 16 13 C 0.10 -0.38 4.88 -67.12 -0.33 -0.71 16 14 H 0.11 -0.53 8.14 -51.93 -0.42 -0.95 16 15 N -0.44 0.35 2.94 -110.59 -0.33 0.02 16 16 C -0.05 0.00 11.58 -16.56 -0.19 -0.19 16 17 C -0.03 -0.06 11.87 -17.81 -0.21 -0.27 16 18 N -0.49 -1.90 11.25 -14.66 -0.16 -2.07 16 19 C 0.18 0.12 11.19 -90.37 -1.01 -0.89 16 20 C -0.14 0.63 7.05 -25.92 -0.18 0.44 16 21 S 0.09 -0.04 20.57 -107.50 -2.21 -2.25 16 22 H 0.38 -0.65 8.70 45.56 0.40 -0.26 16 23 H 0.13 -0.16 7.96 -51.93 -0.41 -0.57 16 24 H -0.24 -0.26 7.11 56.52 0.40 0.14 16 25 H -0.24 -0.46 7.11 56.52 0.40 -0.06 16 26 H 0.18 0.07 8.06 -52.49 -0.42 -0.35 16 27 H 0.41 -1.71 8.60 -40.82 -0.35 -2.06 16 28 H 0.07 -0.12 8.14 -51.93 -0.42 -0.54 16 29 H 0.07 -0.16 7.84 -51.93 -0.41 -0.57 16 30 H 0.08 -0.25 8.14 -51.93 -0.42 -0.67 16 31 H 0.11 -0.57 8.10 -51.93 -0.42 -0.99 16 32 H 0.17 -0.47 8.06 -52.49 -0.42 -0.89 16 33 H 0.17 0.05 8.06 -52.49 -0.42 -0.37 16 34 H 0.20 -0.45 5.86 -52.49 -0.31 -0.75 16 35 H 0.11 -0.54 7.90 -51.93 -0.41 -0.95 16 36 H 0.08 -0.30 8.02 -51.93 -0.42 -0.72 16 LS Contribution 316.97 15.07 4.78 4.78 Total: 0.00 -8.07 316.97 -11.98 -20.05 By element: Atomic # 1 Polarization: -6.97 SS G_CDS: -4.36 Total: -11.33 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: -3.45 Total: -2.19 kcal Atomic # 7 Polarization: -1.34 SS G_CDS: -1.00 Total: -2.34 kcal Atomic # 8 Polarization: -0.46 SS G_CDS: -0.45 Total: -0.91 kcal Atomic # 14 Polarization: -0.52 SS G_CDS: -5.28 Total: -5.80 kcal Atomic # 16 Polarization: -0.04 SS G_CDS: -2.21 Total: -2.25 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -8.07 -11.98 -20.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16945876_15704118.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.337 kcal (2) G-P(sol) polarization free energy of solvation -8.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds