Wall clock time and date at job start Mon Mar 8 2021 06:58:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86298 * 109.47261 * 2 1 4 4 C 1.50698 * 109.46837 * 239.99355 * 2 1 3 5 5 C 1.33320 * 125.95578 * 300.02878 * 4 2 1 6 6 N 1.32119 * 114.58192 * 180.02562 * 5 4 2 7 7 C 1.29689 * 116.86486 * 359.97438 * 6 5 4 8 8 N 1.38609 * 124.94704 * 180.02562 * 7 6 5 9 9 C 1.46501 * 120.00319 * 359.95720 * 8 7 6 10 10 C 1.53001 * 109.47056 * 180.02562 * 9 8 7 11 11 H 1.08997 * 112.84893 * 43.80497 * 10 9 8 12 12 C 1.53785 * 113.61294 * 175.00159 * 10 9 8 13 13 C 1.53775 * 87.08220 * 139.98033 * 12 10 9 14 14 H 1.08998 * 113.61359 * 219.93605 * 13 12 10 15 15 N 1.46498 * 113.61406 * 89.11547 * 13 12 10 16 16 C 1.36888 * 126.39605 * 119.71550 * 15 13 12 17 17 C 1.34675 * 106.81447 * 179.83878 * 16 15 13 18 18 N 1.34131 * 108.01954 * 0.42530 * 17 16 15 19 19 C 1.30498 * 109.25892 * 359.72624 * 18 17 16 20 20 C 1.53781 * 113.61493 * 272.49717 * 10 9 8 21 21 S 1.70961 * 110.10144 * 359.97438 * 7 6 5 22 22 H 0.96706 * 114.00177 * 59.99895 * 1 2 3 23 23 H 1.09000 * 109.46772 * 120.00045 * 2 1 3 24 24 H 1.48500 * 109.99801 * 298.67743 * 3 2 1 25 25 H 1.48493 * 110.00101 * 59.99765 * 3 2 1 26 26 H 1.07998 * 122.71380 * 359.97438 * 5 4 2 27 27 H 0.97006 * 119.99981 * 179.97438 * 8 7 6 28 28 H 1.08997 * 109.47116 * 300.00354 * 9 8 7 29 29 H 1.08997 * 109.46934 * 60.00108 * 9 8 7 30 30 H 1.08997 * 113.61418 * 254.53098 * 12 10 9 31 31 H 1.09006 * 113.61409 * 25.42745 * 12 10 9 32 32 H 1.07998 * 126.59009 * 359.97438 * 16 15 13 33 33 H 1.07998 * 125.98672 * 180.11089 * 17 16 15 34 34 H 1.07994 * 125.65340 * 179.97438 * 19 18 17 35 35 H 1.09002 * 113.61533 * 334.56421 * 20 10 9 36 36 H 1.08994 * 113.61520 * 105.47241 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9312 -0.7105 -1.2304 5 6 1.6829 -1.9788 -1.5581 6 7 2.2380 -2.3726 -2.6905 7 6 2.9431 -1.4946 -3.3340 8 7 3.5965 -1.7262 -4.5343 9 6 3.5191 -3.0448 -5.1680 10 6 4.3219 -3.0326 -6.4704 11 1 5.2866 -2.5357 -6.3683 12 6 4.4063 -4.4071 -7.1549 13 6 4.2235 -3.6660 -8.4898 14 1 3.5732 -4.1866 -9.1927 15 7 5.4837 -3.2300 -9.0963 16 6 5.9675 -3.6034 -10.3212 17 6 7.1454 -2.9710 -10.4841 18 7 7.3788 -2.2390 -9.3846 19 6 6.3877 -2.3892 -8.5491 20 6 3.5109 -2.5629 -7.6896 21 16 2.9480 -0.0097 -2.4868 22 1 -0.3934 0.4417 -0.7651 23 1 1.7922 -0.5138 0.8900 24 1 1.5880 2.4585 -1.2243 25 1 1.5615 2.4679 1.2084 26 1 1.0777 -2.6318 -0.9469 27 1 4.1053 -1.0152 -4.9546 28 1 3.9311 -3.7963 -4.4946 29 1 2.4778 -3.2831 -5.3848 30 1 5.3794 -4.8872 -7.0517 31 1 3.5776 -5.0702 -6.9065 32 1 5.4945 -4.2742 -11.0230 33 1 7.7913 -3.0447 -11.3465 34 1 6.3045 -1.9194 -7.5802 35 1 2.4374 -2.7218 -7.5875 36 1 3.7611 -1.5542 -8.0182 There are 50 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 50 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_16945876_15704118.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:58:04 Heat of formation + Delta-G solvation = 123.661777 kcal Electronic energy + Delta-G solvation = -20240.622142 eV Core-core repulsion = 17048.896513 eV Total energy + Delta-G solvation = -3191.725629 eV No. of doubly occupied orbitals = 50 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.21705 -40.80363 -40.04876 -38.10239 -36.49603 -33.43145 -31.50312 -30.30929 -29.11909 -26.88440 -26.41447 -25.10738 -24.00042 -22.41470 -21.81330 -21.01821 -20.70798 -19.68169 -18.24728 -17.78539 -17.13363 -16.66817 -16.40498 -16.26942 -16.01729 -15.81875 -15.73538 -15.26086 -14.98224 -14.83640 -14.55782 -14.38616 -13.93849 -13.59757 -13.47501 -13.16250 -12.91247 -12.46515 -12.05660 -12.00920 -11.73852 -11.65336 -11.15862 -10.92767 -10.91172 -10.52397 -10.30293 -10.20535 -9.48425 -8.72458 -5.03602 -0.05221 0.03974 0.67527 1.08777 1.25781 1.54589 1.79524 1.88612 1.97209 2.17526 2.19584 3.23347 3.34242 3.39585 3.57085 3.62249 3.71632 3.78379 3.92861 3.98349 4.22972 4.24798 4.49090 4.58076 4.58824 4.66210 4.69922 4.71208 4.76407 4.79461 4.88743 4.94774 5.05543 5.26092 5.34765 5.80428 5.81844 6.14552 6.28188 6.43914 7.00773 7.12502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.542 6.542 2 C -0.022 4.022 3 Si 0.722 3.278 4 C -0.307 4.307 5 C 0.104 3.896 6 N -0.579 5.579 7 C 0.315 3.685 8 N -0.684 5.684 9 C 0.152 3.848 10 C -0.122 4.122 11 H 0.104 0.896 12 C -0.127 4.127 13 C 0.098 3.902 14 H 0.131 0.869 15 N -0.439 5.439 16 C -0.047 4.047 17 C -0.063 4.063 18 N -0.541 5.541 19 C 0.173 3.827 20 C -0.130 4.130 21 S 0.111 5.889 22 H 0.386 0.614 23 H 0.134 0.866 24 H -0.266 1.266 25 H -0.276 1.276 26 H 0.178 0.822 27 H 0.424 0.576 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.121 0.879 32 H 0.201 0.799 33 H 0.175 0.825 34 H 0.222 0.778 35 H 0.117 0.883 36 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.174 -1.156 -1.497 2.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.350 6.350 2 C -0.134 4.134 3 Si 0.625 3.375 4 C -0.430 4.430 5 C -0.047 4.047 6 N -0.305 5.305 7 C -0.056 4.056 8 N -0.325 5.325 9 C 0.027 3.973 10 C -0.141 4.141 11 H 0.122 0.878 12 C -0.165 4.165 13 C -0.005 4.005 14 H 0.149 0.851 15 N -0.121 5.121 16 C -0.180 4.180 17 C -0.210 4.210 18 N -0.260 5.260 19 C -0.109 4.109 20 C -0.168 4.168 21 S 0.360 5.640 22 H 0.235 0.765 23 H 0.152 0.848 24 H -0.192 1.192 25 H -0.202 1.202 26 H 0.195 0.805 27 H 0.263 0.737 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.139 0.861 32 H 0.218 0.782 33 H 0.192 0.808 34 H 0.238 0.762 35 H 0.135 0.865 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.345 0.083 -1.261 1.310 hybrid contribution -1.905 -0.992 -0.329 2.173 sum -2.250 -0.909 -1.590 2.901 Atomic orbital electron populations 1.86589 1.18189 1.80243 1.50015 1.24249 0.82998 1.10247 0.95918 0.94397 0.90642 0.73346 0.79137 1.25609 1.13221 0.99101 1.05026 1.21435 0.97659 0.93651 0.91934 1.66485 1.18233 1.34632 1.11195 1.23959 0.95054 0.93713 0.92854 1.44095 1.54189 1.15438 1.18798 1.21333 1.00281 0.83196 0.92535 1.22989 0.99721 0.98515 0.92866 0.87785 1.23346 1.04421 0.96234 0.92533 1.22552 0.83098 0.98546 0.96265 0.85143 1.45455 1.17493 1.34663 1.14527 1.23186 0.98414 1.06379 0.90037 1.22662 0.98464 1.00884 0.99003 1.70277 1.26898 1.24666 1.04166 1.25379 0.86747 0.97455 1.01348 1.23471 1.01104 0.98426 0.93801 1.83893 1.50930 1.12589 1.16597 0.76461 0.84804 1.19201 1.20168 0.80537 0.73688 0.92094 0.91300 0.91015 0.86074 0.78207 0.80784 0.76234 0.86460 0.90449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -1.03 12.87 -148.98 -1.92 -2.95 16 2 C -0.02 0.02 2.99 71.24 0.21 0.23 16 3 Si 0.72 -1.12 31.05 68.60 2.13 1.01 16 4 C -0.31 -0.22 5.74 24.57 0.14 -0.08 16 5 C 0.10 0.35 11.22 83.54 0.94 1.28 16 6 N -0.58 -2.80 10.14 -202.04 -2.05 -4.85 16 7 C 0.31 0.23 8.09 179.32 1.45 1.68 16 8 N -0.68 3.31 5.71 -351.01 -2.01 1.31 16 9 C 0.15 -0.97 5.79 86.38 0.50 -0.47 16 10 C -0.12 1.23 3.25 -10.27 -0.03 1.19 16 11 H 0.10 -1.07 5.64 -2.39 -0.01 -1.08 16 12 C -0.13 1.22 7.35 31.12 0.23 1.45 16 13 C 0.10 -0.85 4.88 45.52 0.22 -0.62 16 14 H 0.13 -1.48 8.14 -2.39 -0.02 -1.50 16 15 N -0.44 0.95 2.94 -503.81 -1.48 -0.54 16 16 C -0.05 0.01 11.58 83.09 0.96 0.97 16 17 C -0.06 -0.33 11.87 83.52 0.99 0.66 16 18 N -0.54 -4.76 11.25 -200.31 -2.25 -7.01 16 19 C 0.17 0.26 11.19 180.26 2.02 2.28 16 20 C -0.13 1.35 7.05 31.12 0.22 1.57 16 21 S 0.11 -0.15 20.57 -56.49 -1.16 -1.31 16 22 H 0.39 -1.26 8.70 -74.05 -0.64 -1.91 16 23 H 0.13 -0.37 7.96 -2.39 -0.02 -0.39 16 24 H -0.27 -0.58 7.11 99.48 0.71 0.13 16 25 H -0.28 -1.32 7.11 99.48 0.71 -0.61 16 26 H 0.18 0.29 8.06 -2.91 -0.02 0.27 16 27 H 0.42 -3.88 8.60 -92.70 -0.80 -4.68 16 28 H 0.06 -0.21 8.14 -2.39 -0.02 -0.23 16 29 H 0.07 -0.35 7.84 -2.39 -0.02 -0.37 16 30 H 0.07 -0.46 8.14 -2.39 -0.02 -0.48 16 31 H 0.12 -1.45 8.10 -2.38 -0.02 -1.47 16 32 H 0.20 -1.33 8.06 -2.91 -0.02 -1.36 16 33 H 0.17 0.38 8.06 -2.91 -0.02 0.36 16 34 H 0.22 -1.05 5.86 -2.91 -0.02 -1.07 16 35 H 0.12 -1.39 7.90 -2.39 -0.02 -1.41 16 36 H 0.08 -0.67 8.02 -2.39 -0.02 -0.69 16 Total: 0.00 -19.51 316.97 -1.17 -20.69 By element: Atomic # 1 Polarization: -16.21 SS G_CDS: -0.28 Total: -16.49 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: 7.85 Total: 10.13 kcal Atomic # 7 Polarization: -3.30 SS G_CDS: -7.79 Total: -11.09 kcal Atomic # 8 Polarization: -1.03 SS G_CDS: -1.92 Total: -2.95 kcal Atomic # 14 Polarization: -1.12 SS G_CDS: 2.13 Total: 1.01 kcal Atomic # 16 Polarization: -0.15 SS G_CDS: -1.16 Total: -1.31 kcal Total: -19.51 -1.17 -20.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16945876_15704118.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.348 kcal (2) G-P(sol) polarization free energy of solvation -19.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds