Wall clock time and date at job start Mon Mar 8 2021 06:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86300 * 109.46920 * 2 1 4 4 C 1.50699 * 109.46621 * 119.99307 * 2 1 3 5 5 C 1.37985 * 120.32912 * 244.97937 * 4 2 1 6 6 N 1.32006 * 120.90226 * 179.77083 * 5 4 2 7 7 C 1.32335 * 121.64470 * 0.51978 * 6 5 4 8 8 N 1.39148 * 119.71742 * 179.75138 * 7 6 5 9 9 C 1.46500 * 119.99787 * 359.73308 * 8 7 6 10 10 C 1.53003 * 109.47147 * 179.97438 * 9 8 7 11 11 H 1.09004 * 112.84820 * 316.19965 * 10 9 8 12 12 C 1.53781 * 113.68799 * 87.46417 * 10 9 8 13 13 C 1.53779 * 87.08089 * 139.99613 * 12 10 9 14 14 H 1.09004 * 113.69230 * 220.00861 * 13 12 10 15 15 N 1.46499 * 113.61998 * 89.11555 * 13 12 10 16 16 C 1.36883 * 126.40238 * 142.50146 * 15 13 12 17 17 C 1.34666 * 106.81734 * 179.97438 * 16 15 13 18 18 N 1.34126 * 108.02240 * 359.97438 * 17 16 15 19 19 C 1.30494 * 109.25549 * 0.02562 * 18 17 16 20 20 C 1.53783 * 87.08207 * 334.56494 * 13 12 10 21 21 C 1.39345 * 120.56646 * 359.48452 * 7 6 5 22 22 F 1.35098 * 120.46985 * 180.27151 * 21 7 6 23 23 C 1.38441 * 119.05353 * 0.24818 * 21 7 6 24 24 H 0.96702 * 114.00004 * 60.00523 * 1 2 3 25 25 H 1.08997 * 109.47390 * 239.99425 * 2 1 3 26 26 H 1.48509 * 109.99628 * 298.67577 * 3 2 1 27 27 H 1.48499 * 110.00497 * 59.99429 * 3 2 1 28 28 H 1.08006 * 119.54642 * 0.02562 * 5 4 2 29 29 H 0.96999 * 120.00553 * 179.72808 * 8 7 6 30 30 H 1.09002 * 109.47255 * 59.99665 * 9 8 7 31 31 H 1.08996 * 109.47404 * 299.99433 * 9 8 7 32 32 H 1.08993 * 113.61700 * 25.44451 * 12 10 9 33 33 H 1.09006 * 113.61373 * 254.54049 * 12 10 9 34 34 H 1.08000 * 126.58593 * 359.94892 * 16 15 13 35 35 H 1.07999 * 125.98413 * 180.02562 * 17 16 15 36 36 H 1.08006 * 125.64795 * 180.26456 * 19 18 17 37 37 H 1.09002 * 113.61297 * 139.97930 * 20 13 12 38 38 H 1.08997 * 113.61740 * 270.80509 * 20 13 12 39 39 H 1.08002 * 120.75773 * 180.02562 * 23 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9312 -0.7103 1.2306 5 6 2.6384 -0.0201 2.1937 6 7 3.0797 -0.6299 3.2781 7 6 2.8731 -1.9212 3.4811 8 7 3.3607 -2.5245 4.6363 9 6 4.1043 -1.7318 5.6187 10 6 4.5236 -2.6285 6.7854 11 1 3.7255 -3.2929 7.1166 12 6 5.8674 -3.3425 6.5638 13 6 6.1728 -3.0584 8.0440 14 1 7.2065 -2.7669 8.2298 15 7 5.7062 -4.1093 8.9518 16 6 6.3478 -4.5560 10.0754 17 6 5.5745 -5.5214 10.6078 18 7 4.4900 -5.6600 9.8309 19 6 4.5621 -4.8176 8.8369 20 6 5.2072 -1.8666 7.9331 21 6 2.1666 -2.6807 2.5506 22 9 1.9521 -3.9976 2.7625 23 6 1.6873 -2.0664 1.4063 24 1 -0.3933 0.4416 -0.7651 25 1 1.7924 -0.5139 -0.8899 26 1 1.5879 2.4585 -1.2244 27 1 1.5614 2.4680 1.2084 28 1 2.8299 1.0345 2.0604 29 1 3.2082 -3.4698 4.7913 30 1 3.4710 -0.9259 5.9896 31 1 4.9917 -1.3091 5.1477 32 1 6.5303 -2.8211 5.8734 33 1 5.7657 -4.4034 6.3349 34 1 7.2928 -4.2024 10.4605 35 1 5.7896 -6.0847 11.5038 36 1 3.8263 -4.7024 8.0547 37 1 4.5724 -1.7360 8.8095 38 1 5.6898 -0.9414 7.6183 39 1 1.1360 -2.6287 0.6672 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_16945876_17656566.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:58:10 Heat of formation + Delta-G solvation = 71.153015 kcal Electronic energy + Delta-G solvation = -24044.474446 eV Core-core repulsion = 20291.865644 eV Total energy + Delta-G solvation = -3752.608802 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 305.128 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.85551 -43.23725 -41.38405 -40.27249 -38.17317 -36.65841 -33.67854 -33.17740 -31.79890 -30.26120 -28.94626 -27.14857 -26.32001 -25.38807 -23.98024 -22.76558 -22.41203 -21.68983 -21.05261 -19.29029 -18.69400 -18.33362 -18.00529 -17.93859 -16.94358 -16.77389 -16.41638 -16.27909 -15.98149 -15.75387 -15.58804 -15.10476 -15.06480 -14.78001 -14.65651 -14.31046 -14.22635 -14.00646 -13.79995 -13.78296 -13.63355 -13.30491 -12.63270 -12.23169 -12.07933 -11.93502 -11.84361 -11.27448 -10.85342 -10.73323 -10.70416 -10.52472 -10.49133 -9.43724 -8.77197 -5.05513 -0.05450 0.13831 1.08759 1.17586 1.50908 1.69287 1.87050 1.90568 2.29993 2.52558 2.98349 3.04837 3.11685 3.19840 3.29975 3.37200 3.48588 3.61778 3.64821 3.85532 3.86941 4.02121 4.05119 4.08170 4.22862 4.30324 4.35367 4.48706 4.50012 4.54790 4.57954 4.64922 4.70362 4.74023 4.82110 4.99652 4.99716 5.32781 5.35164 5.83449 5.90440 6.13315 6.23938 6.35762 6.94222 7.18076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.537 6.537 2 C -0.063 4.063 3 Si 0.681 3.319 4 C -0.161 4.161 5 C 0.150 3.850 6 N -0.512 5.512 7 C 0.389 3.611 8 N -0.718 5.718 9 C 0.145 3.855 10 C -0.133 4.133 11 H 0.100 0.900 12 C -0.138 4.138 13 C 0.104 3.896 14 H 0.115 0.885 15 N -0.442 5.442 16 C -0.053 4.053 17 C -0.030 4.030 18 N -0.493 5.493 19 C 0.178 3.822 20 C -0.133 4.133 21 C -0.019 4.019 22 F -0.133 7.133 23 C -0.037 4.037 24 H 0.381 0.619 25 H 0.078 0.922 26 H -0.258 1.258 27 H -0.251 1.251 28 H 0.164 0.836 29 H 0.412 0.588 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.107 0.893 33 H 0.081 0.919 34 H 0.175 0.825 35 H 0.171 0.829 36 H 0.200 0.800 37 H 0.082 0.918 38 H 0.108 0.892 39 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.773 3.860 -3.261 6.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.345 6.345 2 C -0.174 4.174 3 Si 0.581 3.419 4 C -0.166 4.166 5 C -0.007 4.007 6 N -0.229 5.229 7 C 0.151 3.849 8 N -0.351 5.351 9 C 0.021 3.979 10 C -0.152 4.152 11 H 0.118 0.882 12 C -0.176 4.176 13 C 0.000 4.000 14 H 0.133 0.867 15 N -0.126 5.126 16 C -0.185 4.185 17 C -0.177 4.177 18 N -0.211 5.211 19 C -0.104 4.104 20 C -0.171 4.171 21 C -0.046 4.046 22 F -0.112 7.112 23 C -0.064 4.064 24 H 0.229 0.771 25 H 0.096 0.904 26 H -0.183 1.183 27 H -0.176 1.176 28 H 0.180 0.820 29 H 0.249 0.751 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.126 0.874 33 H 0.099 0.901 34 H 0.192 0.808 35 H 0.188 0.812 36 H 0.217 0.783 37 H 0.100 0.900 38 H 0.126 0.874 39 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 4.629 4.473 -1.863 6.702 hybrid contribution -1.075 -0.707 -1.209 1.766 sum 3.554 3.766 -3.072 6.021 Atomic orbital electron populations 1.86599 1.17800 1.80168 1.49886 1.24572 0.84468 1.10843 0.97482 0.95168 0.91509 0.74419 0.80779 1.19816 1.04530 0.93713 0.98586 1.22321 0.91920 0.99371 0.87124 1.67319 1.25406 1.07191 1.22954 1.18407 0.90616 0.88953 0.86947 1.44507 1.59565 1.12124 1.18943 1.21294 0.96261 0.93249 0.87094 1.23069 0.97484 0.98600 0.96016 0.88217 1.23496 0.97120 1.02511 0.94500 1.22323 0.99667 0.87796 0.90208 0.86723 1.45288 1.18045 1.28760 1.20471 1.22775 1.01912 1.02567 0.91295 1.22375 0.92707 1.00675 1.01977 1.70347 1.23730 1.22247 1.04744 1.25007 0.90685 0.93635 1.01104 1.23352 0.97782 0.97285 0.98705 1.17970 1.08616 0.79582 0.98396 1.91493 1.93655 1.31177 1.94890 1.21269 0.95341 0.94504 0.95249 0.77060 0.90382 1.18264 1.17556 0.81968 0.75063 0.91038 0.90857 0.87433 0.90067 0.80801 0.81218 0.78310 0.89953 0.87373 0.83413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.14 12.82 -35.23 -0.45 -0.59 16 2 C -0.06 0.08 2.81 36.01 0.10 0.18 16 3 Si 0.68 -1.45 29.87 -169.99 -5.08 -6.53 16 4 C -0.16 -0.08 5.39 -104.47 -0.56 -0.64 16 5 C 0.15 0.07 9.84 -17.57 -0.17 -0.10 16 6 N -0.51 -0.84 9.57 -12.36 -0.12 -0.96 16 7 C 0.39 0.55 7.49 -154.85 -1.16 -0.61 16 8 N -0.72 0.57 5.71 -60.34 -0.34 0.23 16 9 C 0.14 -0.34 5.54 -4.04 -0.02 -0.36 16 10 C -0.13 0.49 3.25 -89.80 -0.29 0.20 16 11 H 0.10 -0.34 5.63 -51.93 -0.29 -0.63 16 12 C -0.14 0.53 7.06 -25.92 -0.18 0.35 16 13 C 0.10 -0.33 4.88 -67.12 -0.33 -0.65 16 14 H 0.11 -0.49 8.14 -51.93 -0.42 -0.92 16 15 N -0.44 0.08 2.94 -110.59 -0.33 -0.25 16 16 C -0.05 -0.03 11.58 -16.56 -0.19 -0.22 16 17 C -0.03 -0.08 11.87 -17.81 -0.21 -0.29 16 18 N -0.49 -2.25 11.25 -14.67 -0.16 -2.42 16 19 C 0.18 0.27 11.19 -90.38 -1.01 -0.74 16 20 C -0.13 0.50 7.35 -25.92 -0.19 0.31 16 21 C -0.02 -0.03 7.35 -39.10 -0.29 -0.32 16 22 F -0.13 -0.30 16.65 2.25 0.04 -0.26 16 23 C -0.04 -0.04 9.82 -39.26 -0.39 -0.43 16 24 H 0.38 -1.41 8.74 45.56 0.40 -1.01 16 25 H 0.08 -0.23 7.96 -51.93 -0.41 -0.64 16 26 H -0.26 0.00 7.11 56.52 0.40 0.41 16 27 H -0.25 -0.21 7.05 56.52 0.40 0.19 16 28 H 0.16 -0.27 4.87 -52.48 -0.26 -0.52 16 29 H 0.41 -0.72 7.94 -40.82 -0.32 -1.04 16 30 H 0.07 -0.09 8.14 -51.93 -0.42 -0.51 16 31 H 0.07 -0.17 7.85 -51.93 -0.41 -0.58 16 32 H 0.11 -0.50 7.90 -51.93 -0.41 -0.91 16 33 H 0.08 -0.23 8.03 -51.93 -0.42 -0.64 16 34 H 0.17 -0.41 8.06 -52.49 -0.42 -0.83 16 35 H 0.17 0.13 8.06 -52.49 -0.42 -0.29 16 36 H 0.20 -0.22 5.85 -52.48 -0.31 -0.53 16 37 H 0.08 -0.20 8.14 -51.93 -0.42 -0.62 16 38 H 0.11 -0.55 8.10 -51.93 -0.42 -0.97 16 39 H 0.15 0.00 8.06 -52.49 -0.42 -0.43 16 LS Contribution 329.85 15.07 4.97 4.97 Total: 0.00 -8.65 329.85 -10.96 -19.61 By element: Atomic # 1 Polarization: -5.89 SS G_CDS: -4.59 Total: -10.48 kcal Atomic # 6 Polarization: 1.57 SS G_CDS: -4.90 Total: -3.33 kcal Atomic # 7 Polarization: -2.44 SS G_CDS: -0.95 Total: -3.39 kcal Atomic # 8 Polarization: -0.14 SS G_CDS: -0.45 Total: -0.59 kcal Atomic # 9 Polarization: -0.30 SS G_CDS: 0.04 Total: -0.26 kcal Atomic # 14 Polarization: -1.45 SS G_CDS: -5.08 Total: -6.53 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -8.65 -10.96 -19.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16945876_17656566.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.763 kcal (2) G-P(sol) polarization free energy of solvation -8.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds