Wall clock time and date at job start Mon Mar 8 2021 06:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86300 * 109.46920 * 2 1 4 4 C 1.50699 * 109.46621 * 119.99307 * 2 1 3 5 5 C 1.37985 * 120.32912 * 244.97937 * 4 2 1 6 6 N 1.32006 * 120.90226 * 179.77083 * 5 4 2 7 7 C 1.32335 * 121.64470 * 0.51978 * 6 5 4 8 8 N 1.39148 * 119.71742 * 179.75138 * 7 6 5 9 9 C 1.46500 * 119.99787 * 359.73308 * 8 7 6 10 10 C 1.53003 * 109.47147 * 179.97438 * 9 8 7 11 11 H 1.09004 * 112.84820 * 316.19965 * 10 9 8 12 12 C 1.53781 * 113.68799 * 87.46417 * 10 9 8 13 13 C 1.53779 * 87.08089 * 139.99613 * 12 10 9 14 14 H 1.09004 * 113.69230 * 220.00861 * 13 12 10 15 15 N 1.46499 * 113.61998 * 89.11555 * 13 12 10 16 16 C 1.36883 * 126.40238 * 142.50146 * 15 13 12 17 17 C 1.34666 * 106.81734 * 179.97438 * 16 15 13 18 18 N 1.34126 * 108.02240 * 359.97438 * 17 16 15 19 19 C 1.30494 * 109.25549 * 0.02562 * 18 17 16 20 20 C 1.53783 * 87.08207 * 334.56494 * 13 12 10 21 21 C 1.39345 * 120.56646 * 359.48452 * 7 6 5 22 22 F 1.35098 * 120.46985 * 180.27151 * 21 7 6 23 23 C 1.38441 * 119.05353 * 0.24818 * 21 7 6 24 24 H 0.96702 * 114.00004 * 60.00523 * 1 2 3 25 25 H 1.08997 * 109.47390 * 239.99425 * 2 1 3 26 26 H 1.48509 * 109.99628 * 298.67577 * 3 2 1 27 27 H 1.48499 * 110.00497 * 59.99429 * 3 2 1 28 28 H 1.08006 * 119.54642 * 0.02562 * 5 4 2 29 29 H 0.96999 * 120.00553 * 179.72808 * 8 7 6 30 30 H 1.09002 * 109.47255 * 59.99665 * 9 8 7 31 31 H 1.08996 * 109.47404 * 299.99433 * 9 8 7 32 32 H 1.08993 * 113.61700 * 25.44451 * 12 10 9 33 33 H 1.09006 * 113.61373 * 254.54049 * 12 10 9 34 34 H 1.08000 * 126.58593 * 359.94892 * 16 15 13 35 35 H 1.07999 * 125.98413 * 180.02562 * 17 16 15 36 36 H 1.08006 * 125.64795 * 180.26456 * 19 18 17 37 37 H 1.09002 * 113.61297 * 139.97930 * 20 13 12 38 38 H 1.08997 * 113.61740 * 270.80509 * 20 13 12 39 39 H 1.08002 * 120.75773 * 180.02562 * 23 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9312 -0.7103 1.2306 5 6 2.6384 -0.0201 2.1937 6 7 3.0797 -0.6299 3.2781 7 6 2.8731 -1.9212 3.4811 8 7 3.3607 -2.5245 4.6363 9 6 4.1043 -1.7318 5.6187 10 6 4.5236 -2.6285 6.7854 11 1 3.7255 -3.2929 7.1166 12 6 5.8674 -3.3425 6.5638 13 6 6.1728 -3.0584 8.0440 14 1 7.2065 -2.7669 8.2298 15 7 5.7062 -4.1093 8.9518 16 6 6.3478 -4.5560 10.0754 17 6 5.5745 -5.5214 10.6078 18 7 4.4900 -5.6600 9.8309 19 6 4.5621 -4.8176 8.8369 20 6 5.2072 -1.8666 7.9331 21 6 2.1666 -2.6807 2.5506 22 9 1.9521 -3.9976 2.7625 23 6 1.6873 -2.0664 1.4063 24 1 -0.3933 0.4416 -0.7651 25 1 1.7924 -0.5139 -0.8899 26 1 1.5879 2.4585 -1.2244 27 1 1.5614 2.4680 1.2084 28 1 2.8299 1.0345 2.0604 29 1 3.2082 -3.4698 4.7913 30 1 3.4710 -0.9259 5.9896 31 1 4.9917 -1.3091 5.1477 32 1 6.5303 -2.8211 5.8734 33 1 5.7657 -4.4034 6.3349 34 1 7.2928 -4.2024 10.4605 35 1 5.7896 -6.0847 11.5038 36 1 3.8263 -4.7024 8.0547 37 1 4.5724 -1.7360 8.8095 38 1 5.6898 -0.9414 7.6183 39 1 1.1360 -2.6287 0.6672 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_16945876_17656566.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:58:09 Heat of formation + Delta-G solvation = 73.422182 kcal Electronic energy + Delta-G solvation = -24044.376047 eV Core-core repulsion = 20291.865644 eV Total energy + Delta-G solvation = -3752.510403 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 305.128 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.96505 -43.22816 -41.39031 -40.10479 -38.11134 -36.59844 -33.67632 -33.20051 -31.78726 -30.30415 -28.84052 -26.86378 -26.25208 -25.34440 -23.94765 -22.76057 -22.41000 -21.66021 -20.92941 -19.27134 -18.64295 -18.31648 -18.05736 -17.77042 -17.00103 -16.66463 -16.31095 -16.24583 -15.88707 -15.71451 -15.54842 -15.08490 -15.03821 -14.82296 -14.55949 -14.29588 -14.22175 -14.01108 -13.79463 -13.57046 -13.45736 -13.15968 -12.58269 -12.08621 -11.98619 -11.75483 -11.63221 -11.19711 -10.94297 -10.74659 -10.73743 -10.53401 -10.42320 -9.49575 -8.75908 -4.89446 -0.09626 0.10458 1.07419 1.31222 1.63495 1.79298 1.96962 1.98501 2.17751 2.50455 3.02040 3.21583 3.25195 3.37411 3.42753 3.61819 3.66583 3.69775 3.71465 3.86516 3.97017 4.10457 4.24455 4.25618 4.36568 4.46295 4.52266 4.59560 4.67803 4.70878 4.73045 4.79008 4.79321 4.91645 4.96672 5.00007 5.23800 5.34019 5.37464 5.79763 5.95869 6.16592 6.26650 6.61484 6.94004 7.11045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.561 6.561 2 C -0.073 4.073 3 Si 0.764 3.236 4 C -0.168 4.168 5 C 0.146 3.854 6 N -0.525 5.525 7 C 0.381 3.619 8 N -0.714 5.714 9 C 0.149 3.851 10 C -0.127 4.127 11 H 0.095 0.905 12 C -0.130 4.130 13 C 0.098 3.902 14 H 0.135 0.865 15 N -0.438 5.438 16 C -0.045 4.045 17 C -0.065 4.065 18 N -0.542 5.542 19 C 0.170 3.830 20 C -0.124 4.124 21 C -0.038 4.038 22 F -0.140 7.140 23 C -0.043 4.043 24 H 0.396 0.604 25 H 0.100 0.900 26 H -0.284 1.284 27 H -0.292 1.292 28 H 0.180 0.820 29 H 0.415 0.585 30 H 0.061 0.939 31 H 0.078 0.922 32 H 0.122 0.878 33 H 0.071 0.929 34 H 0.204 0.796 35 H 0.176 0.824 36 H 0.216 0.784 37 H 0.068 0.932 38 H 0.127 0.873 39 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.962 4.879 -4.011 8.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.371 6.371 2 C -0.182 4.182 3 Si 0.668 3.332 4 C -0.173 4.173 5 C -0.011 4.011 6 N -0.242 5.242 7 C 0.142 3.858 8 N -0.347 5.347 9 C 0.026 3.974 10 C -0.146 4.146 11 H 0.113 0.887 12 C -0.167 4.167 13 C -0.005 4.005 14 H 0.152 0.848 15 N -0.121 5.121 16 C -0.178 4.178 17 C -0.211 4.211 18 N -0.261 5.261 19 C -0.112 4.112 20 C -0.163 4.163 21 C -0.065 4.065 22 F -0.119 7.119 23 C -0.069 4.069 24 H 0.247 0.753 25 H 0.118 0.882 26 H -0.211 1.211 27 H -0.220 1.220 28 H 0.197 0.803 29 H 0.253 0.747 30 H 0.080 0.920 31 H 0.096 0.904 32 H 0.140 0.860 33 H 0.090 0.910 34 H 0.221 0.779 35 H 0.193 0.807 36 H 0.233 0.767 37 H 0.087 0.913 38 H 0.145 0.855 39 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 5.832 5.479 -2.626 8.422 hybrid contribution -1.479 -0.974 -0.992 2.030 sum 4.353 4.505 -3.618 7.235 Atomic orbital electron populations 1.86551 1.18623 1.80740 1.51192 1.24804 0.83985 1.11805 0.97564 0.94228 0.90129 0.71859 0.76946 1.20020 1.04481 0.93579 0.99248 1.22656 0.91512 1.00115 0.86825 1.67358 1.26041 1.07282 1.23533 1.18570 0.90687 0.89042 0.87480 1.44619 1.59176 1.12401 1.18533 1.21310 0.95948 0.93064 0.87064 1.22997 0.97585 0.98402 0.95595 0.88726 1.23472 0.96975 1.02040 0.94254 1.22588 1.00732 0.87147 0.89996 0.84754 1.45469 1.17327 1.28763 1.20505 1.23210 1.02317 1.01390 0.90864 1.22679 0.93250 1.02330 1.02874 1.70270 1.25304 1.24187 1.06338 1.25300 0.91568 0.93410 1.00895 1.23344 0.97326 0.97735 0.97888 1.18133 1.09691 0.79480 0.99156 1.91467 1.93823 1.31639 1.95001 1.21456 0.95208 0.94991 0.95231 0.75283 0.88242 1.21082 1.21990 0.80340 0.74704 0.92044 0.90368 0.85980 0.91007 0.77925 0.80684 0.76742 0.91283 0.85536 0.82739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.13 12.82 -148.98 -1.91 -2.04 16 2 C -0.07 0.22 2.81 71.24 0.20 0.42 16 3 Si 0.76 -3.65 29.87 68.60 2.05 -1.60 16 4 C -0.17 -0.15 5.39 -19.76 -0.11 -0.26 16 5 C 0.15 0.14 9.84 84.61 0.83 0.97 16 6 N -0.52 -1.79 9.57 -193.03 -1.85 -3.64 16 7 C 0.38 1.25 7.49 133.08 1.00 2.25 16 8 N -0.71 0.93 5.71 -344.80 -1.97 -1.04 16 9 C 0.15 -0.74 5.54 86.38 0.48 -0.26 16 10 C -0.13 1.00 3.25 -10.27 -0.03 0.96 16 11 H 0.09 -0.62 5.63 -2.38 -0.01 -0.64 16 12 C -0.13 1.14 7.06 31.12 0.22 1.36 16 13 C 0.10 -0.74 4.88 45.52 0.22 -0.52 16 14 H 0.13 -1.49 8.14 -2.39 -0.02 -1.50 16 15 N -0.44 0.29 2.94 -503.80 -1.48 -1.19 16 16 C -0.04 -0.03 11.58 83.09 0.96 0.93 16 17 C -0.06 -0.42 11.87 83.52 0.99 0.57 16 18 N -0.54 -5.80 11.25 -200.31 -2.25 -8.06 16 19 C 0.17 0.65 11.19 180.26 2.02 2.67 16 20 C -0.12 1.08 7.35 31.12 0.23 1.31 16 21 C -0.04 -0.17 7.35 22.58 0.17 0.00 16 22 F -0.14 -0.77 16.65 44.97 0.75 -0.02 16 23 C -0.04 -0.11 9.82 22.48 0.22 0.11 16 24 H 0.40 -3.08 8.74 -74.06 -0.65 -3.73 16 25 H 0.10 -0.72 7.96 -2.39 -0.02 -0.74 16 26 H -0.28 0.12 7.11 99.48 0.71 0.82 16 27 H -0.29 -0.62 7.05 99.48 0.70 0.09 16 28 H 0.18 -0.65 4.87 -2.91 -0.01 -0.66 16 29 H 0.42 -1.22 7.94 -92.71 -0.74 -1.96 16 30 H 0.06 -0.15 8.14 -2.39 -0.02 -0.17 16 31 H 0.08 -0.44 7.85 -2.39 -0.02 -0.46 16 32 H 0.12 -1.37 7.90 -2.39 -0.02 -1.39 16 33 H 0.07 -0.44 8.03 -2.38 -0.02 -0.45 16 34 H 0.20 -1.26 8.06 -2.91 -0.02 -1.28 16 35 H 0.18 0.56 8.06 -2.91 -0.02 0.54 16 36 H 0.22 -0.28 5.85 -2.91 -0.02 -0.30 16 37 H 0.07 -0.36 8.14 -2.39 -0.02 -0.37 16 38 H 0.13 -1.52 8.10 -2.39 -0.02 -1.54 16 39 H 0.15 0.05 8.06 -2.91 -0.02 0.03 16 Total: 0.00 -21.32 329.85 0.49 -20.83 By element: Atomic # 1 Polarization: -13.49 SS G_CDS: -0.24 Total: -13.74 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: 7.40 Total: 10.50 kcal Atomic # 7 Polarization: -6.38 SS G_CDS: -7.55 Total: -13.94 kcal Atomic # 8 Polarization: -0.13 SS G_CDS: -1.91 Total: -2.04 kcal Atomic # 9 Polarization: -0.77 SS G_CDS: 0.75 Total: -0.02 kcal Atomic # 14 Polarization: -3.65 SS G_CDS: 2.05 Total: -1.60 kcal Total: -21.32 0.49 -20.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16945876_17656566.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.250 kcal (2) G-P(sol) polarization free energy of solvation -21.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds