Wall clock time and date at job start Mon Mar 8 2021 06:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86299 * 1 3 3 C 1.86295 * 109.87036 * 2 1 4 4 C 1.85706 * 109.82332 * 120.90457 * 2 1 3 5 5 C 1.53314 * 113.39484 * 202.17661 * 4 2 1 6 6 C 1.54209 * 113.73069 * 317.44445 * 5 4 2 7 7 C 1.52921 * 107.97019 * 320.32808 * 6 5 4 8 8 N 1.46531 * 104.91132 * 108.73783 * 7 6 5 9 9 C 1.38412 * 110.99593 * 129.61512 * 8 7 6 10 10 N 1.32493 * 119.21501 * 132.69959 * 9 8 7 11 11 C 1.32277 * 120.73882 * 179.71884 * 10 9 8 12 12 C 1.38608 * 119.19383 * 0.53653 * 11 10 9 13 13 C 1.50701 * 120.71770 * 179.70694 * 12 11 10 14 14 O 1.42905 * 109.46599 * 120.02587 * 13 12 11 15 15 Si 1.86299 * 109.47155 * 0.03026 * 13 12 11 16 16 H 1.48496 * 109.47379 * 59.99455 * 15 13 12 17 17 H 1.48504 * 109.47028 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47046 * 299.99502 * 15 13 12 19 19 C 1.38601 * 118.56004 * 359.73780 * 12 11 10 20 20 N 1.32276 * 119.19633 * 359.97438 * 19 12 11 21 21 C 1.41527 * 117.74970 * 259.08387 * 8 7 6 22 22 H 1.09005 * 109.47338 * 299.09851 * 1 2 3 23 23 H 1.09005 * 109.47096 * 59.09490 * 1 2 3 24 24 H 1.08997 * 109.47083 * 179.09537 * 1 2 3 25 25 H 1.08999 * 109.47185 * 187.57723 * 3 2 1 26 26 H 1.08999 * 109.47243 * 307.58230 * 3 2 1 27 27 H 1.09002 * 109.47062 * 67.58022 * 3 2 1 28 28 H 1.09004 * 108.70145 * 323.19210 * 4 2 1 29 29 H 1.09006 * 108.70130 * 81.17034 * 4 2 1 30 30 H 1.09007 * 108.62704 * 78.53880 * 5 4 2 31 31 H 1.09002 * 108.63366 * 196.34309 * 5 4 2 32 32 H 1.09004 * 109.75997 * 200.71197 * 6 5 4 33 33 H 1.09000 * 109.76317 * 79.94923 * 6 5 4 34 34 H 1.09008 * 110.34136 * 349.89735 * 7 6 5 35 35 H 1.08987 * 110.48279 * 227.65733 * 7 6 5 36 36 H 1.07997 * 120.40626 * 180.29437 * 11 10 9 37 37 H 1.08995 * 109.47458 * 240.02672 * 13 12 11 38 38 H 0.96703 * 114.00322 * 299.99838 * 14 13 12 39 39 H 1.08000 * 120.40061 * 180.02562 * 19 12 11 40 40 H 1.09001 * 110.22441 * 303.89841 * 21 8 7 41 41 H 1.08998 * 110.22485 * 181.90619 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4962 1.7520 0.0000 4 6 2.4928 -0.8973 1.4990 5 6 3.9250 -0.5087 1.8840 6 6 4.8798 -0.3858 0.6793 7 6 4.5553 -1.5169 -0.2973 8 7 3.9163 -0.8575 -1.4392 9 6 4.5047 -1.2472 -2.6299 10 7 3.7332 -1.6095 -3.6442 11 6 4.2633 -1.9821 -4.7974 12 6 5.6426 -2.0009 -4.9328 13 6 6.2831 -2.4258 -6.2290 14 8 7.0742 -1.3526 -6.7435 15 14 4.9575 -2.8665 -7.4616 16 1 4.0918 -1.6841 -7.7015 17 1 5.5888 -3.2846 -8.7392 18 1 4.1355 -3.9816 -6.9270 19 6 6.4199 -1.6211 -3.8499 20 7 5.8260 -1.2538 -2.7266 21 6 2.5050 -0.9148 -1.5282 22 1 -0.3634 0.4998 0.8980 23 1 -0.3633 0.5279 -0.8818 24 1 -0.3633 -1.0275 -0.0162 25 1 3.5777 1.7475 -0.1355 26 1 2.0302 2.3068 -0.8144 27 1 2.2511 2.2270 0.9500 28 1 1.8336 -0.6794 2.3393 29 1 2.4622 -1.9692 1.3032 30 1 3.8979 0.4479 2.4059 31 1 4.3192 -1.2628 2.5653 32 1 5.9124 -0.4753 1.0169 33 1 4.7335 0.5770 0.1898 34 1 3.8691 -2.2287 0.1619 35 1 5.4681 -2.0216 -0.6132 36 1 3.6292 -2.2718 -5.6223 37 1 6.9186 -3.2937 -6.0530 38 1 6.5728 -0.5457 -6.9241 39 1 7.4974 -1.6243 -3.9228 40 1 2.1685 -1.9515 -1.5159 41 1 2.1642 -0.4173 -2.4361 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_16945878_12175864.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:58:12 Heat of formation + Delta-G solvation = 14.035612 kcal Electronic energy + Delta-G solvation = -20764.596637 eV Core-core repulsion = 17804.400244 eV Total energy + Delta-G solvation = -2960.196393 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.143 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.44477 -39.51917 -37.78287 -35.55130 -34.85034 -32.64458 -29.98085 -28.93021 -28.37377 -27.69622 -26.40084 -25.24316 -24.58599 -22.62510 -20.89701 -19.29569 -18.89028 -18.01692 -16.86170 -16.39698 -16.31406 -16.25216 -15.83229 -15.23222 -14.97371 -14.82749 -14.78689 -14.37871 -14.12245 -13.86532 -13.61534 -13.29698 -13.17623 -13.14461 -13.00756 -12.60618 -12.28210 -12.22258 -12.08072 -11.93617 -11.87169 -11.70055 -11.55768 -11.07026 -10.78471 -10.64651 -10.60777 -10.33978 -10.03213 -9.20012 -0.18855 0.04166 1.13762 1.43417 1.48163 1.64655 1.86743 1.89592 1.92450 2.35918 2.60348 2.71910 3.13089 3.46479 3.53823 3.60426 3.67546 3.99245 4.03003 4.15044 4.32661 4.38935 4.53362 4.60801 4.65038 4.67862 4.74960 4.81752 4.82310 4.86733 4.88016 4.91232 5.04794 5.18813 5.26963 5.35787 5.38524 5.56067 5.59347 5.68478 5.78437 5.93311 6.13243 6.65123 7.11142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.457 4.457 2 Si 1.083 2.917 3 C -0.455 4.455 4 C -0.418 4.418 5 C -0.104 4.104 6 C -0.129 4.129 7 C 0.065 3.935 8 N -0.457 5.457 9 C 0.474 3.526 10 N -0.565 5.565 11 C 0.161 3.839 12 C -0.262 4.262 13 C -0.055 4.055 14 O -0.548 6.548 15 Si 0.970 3.030 16 H -0.253 1.253 17 H -0.266 1.266 18 H -0.256 1.256 19 C 0.199 3.801 20 N -0.552 5.552 21 C -0.225 4.225 22 H 0.077 0.923 23 H 0.070 0.930 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.061 0.939 27 H 0.074 0.926 28 H 0.085 0.915 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.174 0.826 37 H 0.135 0.865 38 H 0.388 0.612 39 H 0.191 0.809 40 H 0.049 0.951 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.028 -0.753 0.693 1.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.565 4.565 2 Si 1.272 2.728 3 C -0.562 4.562 4 C -0.504 4.504 5 C -0.142 4.142 6 C -0.167 4.167 7 C -0.059 4.059 8 N -0.175 5.175 9 C 0.119 3.881 10 N -0.285 5.285 11 C -0.006 4.006 12 C -0.269 4.269 13 C -0.168 4.168 14 O -0.355 6.355 15 Si 0.794 3.206 16 H -0.177 1.177 17 H -0.190 1.190 18 H -0.180 1.180 19 C 0.031 3.969 20 N -0.271 5.271 21 C -0.396 4.396 22 H 0.096 0.904 23 H 0.089 0.911 24 H 0.091 0.909 25 H 0.089 0.911 26 H 0.080 0.920 27 H 0.093 0.907 28 H 0.104 0.896 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.094 0.906 33 H 0.103 0.897 34 H 0.102 0.898 35 H 0.097 0.903 36 H 0.190 0.810 37 H 0.152 0.848 38 H 0.237 0.763 39 H 0.208 0.792 40 H 0.067 0.933 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.593 -0.700 1.204 2.116 hybrid contribution 0.145 -0.407 -0.904 1.002 sum -1.448 -1.107 0.299 1.847 Atomic orbital electron populations 1.26183 1.20588 1.04847 1.04928 0.78490 0.65323 0.65947 0.63021 1.26347 1.06542 1.19141 1.04188 1.26302 1.00643 1.08069 1.15371 1.21357 0.93638 1.02008 0.97209 1.22248 1.00080 0.98953 0.95396 1.22587 0.98997 0.96398 0.87913 1.55568 1.07371 1.54723 0.99814 1.21823 0.86426 0.87594 0.92240 1.68341 1.41097 1.16995 1.02092 1.23264 0.93134 0.89944 0.94267 1.21995 0.95429 1.08871 1.00568 1.24715 1.03679 0.93951 0.94409 1.86504 1.38484 1.25087 1.85437 0.85379 0.76430 0.80788 0.77980 1.17663 1.19012 1.18001 1.23384 1.01879 0.86228 0.85390 1.68159 1.10526 1.20029 1.28362 1.26641 0.87120 1.07465 1.18334 0.90393 0.91127 0.90894 0.91079 0.91984 0.90727 0.89622 0.90784 0.91600 0.92378 0.90626 0.89651 0.89753 0.90340 0.80958 0.84768 0.76253 0.79179 0.93284 0.89297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.47 8.65 113.37 0.98 2.45 16 2 Si 1.08 -4.04 10.69 68.60 0.73 -3.30 16 3 C -0.46 0.46 8.56 113.37 0.97 1.43 16 4 C -0.42 1.60 4.24 72.09 0.31 1.90 16 5 C -0.10 0.26 5.52 31.11 0.17 0.43 16 6 C -0.13 0.04 5.68 30.98 0.18 0.22 16 7 C 0.07 0.11 5.36 86.35 0.46 0.57 16 8 N -0.46 -1.98 3.07 -519.91 -1.59 -3.57 16 9 C 0.47 3.75 7.24 261.49 1.89 5.64 16 10 N -0.57 -4.38 8.56 -197.99 -1.69 -6.08 16 11 C 0.16 0.52 9.92 84.71 0.84 1.36 16 12 C -0.26 -0.13 5.40 -19.69 -0.11 -0.24 16 13 C -0.06 0.19 2.85 71.24 0.20 0.40 16 14 O -0.55 1.20 12.79 -148.98 -1.90 -0.70 16 15 Si 0.97 -3.04 25.15 68.60 1.73 -1.32 16 16 H -0.25 0.64 7.11 99.48 0.71 1.35 16 17 H -0.27 -0.03 7.11 99.48 0.71 0.68 16 18 H -0.26 0.48 7.11 99.48 0.71 1.19 16 19 C 0.20 0.50 10.92 84.71 0.93 1.42 16 20 N -0.55 -3.93 9.12 -197.99 -1.81 -5.73 16 21 C -0.23 -0.44 3.80 128.67 0.49 0.05 16 22 H 0.08 -0.31 7.96 -2.38 -0.02 -0.32 16 23 H 0.07 -0.18 7.96 -2.38 -0.02 -0.20 16 24 H 0.07 -0.25 7.96 -2.39 -0.02 -0.27 16 25 H 0.07 0.07 5.56 -2.39 -0.01 0.06 16 26 H 0.06 -0.01 7.96 -2.39 -0.02 -0.03 16 27 H 0.07 -0.17 7.96 -2.39 -0.02 -0.19 16 28 H 0.09 -0.44 7.93 -2.39 -0.02 -0.46 16 29 H 0.07 -0.29 6.63 -2.38 -0.02 -0.31 16 30 H 0.07 -0.20 8.14 -2.38 -0.02 -0.22 16 31 H 0.06 -0.14 8.14 -2.39 -0.02 -0.16 16 32 H 0.08 -0.05 8.14 -2.38 -0.02 -0.07 16 33 H 0.09 0.10 4.78 -2.39 -0.01 0.08 16 34 H 0.08 -0.05 5.52 -2.38 -0.01 -0.06 16 35 H 0.08 0.31 6.80 -2.39 -0.02 0.30 16 36 H 0.17 -0.16 5.04 -2.91 -0.01 -0.18 16 37 H 0.13 -0.82 7.96 -2.39 -0.02 -0.83 16 38 H 0.39 -2.97 8.70 -74.06 -0.64 -3.62 16 39 H 0.19 -0.41 8.06 -2.91 -0.02 -0.43 16 40 H 0.05 0.12 8.02 -2.39 -0.02 0.10 16 41 H 0.09 0.38 7.25 -2.39 -0.02 0.36 16 Total: 0.00 -12.23 315.32 3.91 -8.31 By element: Atomic # 1 Polarization: -4.37 SS G_CDS: 1.14 Total: -3.23 kcal Atomic # 6 Polarization: 8.31 SS G_CDS: 7.31 Total: 15.63 kcal Atomic # 7 Polarization: -10.29 SS G_CDS: -5.09 Total: -15.38 kcal Atomic # 8 Polarization: 1.20 SS G_CDS: -1.90 Total: -0.70 kcal Atomic # 14 Polarization: -7.08 SS G_CDS: 2.46 Total: -4.62 kcal Total: -12.23 3.91 -8.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16945878_12175864.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.350 kcal (2) G-P(sol) polarization free energy of solvation -12.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -8.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds