Wall clock time and date at job start Mon Mar 8 2021 06:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86299 * 1 3 3 C 1.86295 * 109.87036 * 2 1 4 4 C 1.85706 * 109.82332 * 120.90457 * 2 1 3 5 5 C 1.53314 * 113.39484 * 202.17661 * 4 2 1 6 6 C 1.54209 * 113.73069 * 317.44445 * 5 4 2 7 7 C 1.52921 * 107.97019 * 320.32808 * 6 5 4 8 8 N 1.46531 * 104.91132 * 108.73783 * 7 6 5 9 9 C 1.38606 * 110.99743 * 129.61462 * 8 7 6 10 10 N 1.29688 * 124.95223 * 132.65726 * 9 8 7 11 11 C 1.32115 * 116.87004 * 179.81127 * 10 9 8 12 12 C 1.33328 * 114.57878 * 0.48173 * 11 10 9 13 13 C 1.50701 * 125.95501 * 179.75252 * 12 11 10 14 14 O 1.42900 * 109.47311 * 119.99381 * 13 12 11 15 15 Si 1.86303 * 109.46729 * 359.97438 * 13 12 11 16 16 H 1.48495 * 109.47324 * 60.00149 * 15 13 12 17 17 H 1.48498 * 109.46727 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47229 * 299.99750 * 15 13 12 19 19 S 1.70964 * 124.95009 * 312.96453 * 9 8 7 20 20 C 1.41527 * 117.74970 * 259.08387 * 8 7 6 21 21 H 1.09005 * 109.47338 * 299.09851 * 1 2 3 22 22 H 1.09005 * 109.47096 * 59.09490 * 1 2 3 23 23 H 1.08997 * 109.47083 * 179.09537 * 1 2 3 24 24 H 1.08999 * 109.47185 * 187.57723 * 3 2 1 25 25 H 1.08999 * 109.47243 * 307.58230 * 3 2 1 26 26 H 1.09002 * 109.47062 * 67.58022 * 3 2 1 27 27 H 1.09004 * 108.70145 * 323.19210 * 4 2 1 28 28 H 1.09006 * 108.70130 * 81.17034 * 4 2 1 29 29 H 1.09007 * 108.62704 * 78.53880 * 5 4 2 30 30 H 1.09002 * 108.63366 * 196.34309 * 5 4 2 31 31 H 1.09004 * 109.75997 * 200.71197 * 6 5 4 32 32 H 1.09000 * 109.76317 * 79.94923 * 6 5 4 33 33 H 1.09008 * 110.34136 * 349.89735 * 7 6 5 34 34 H 1.08987 * 110.48279 * 227.65733 * 7 6 5 35 35 H 1.08000 * 122.71170 * 180.22683 * 11 10 9 36 36 H 1.09004 * 109.46966 * 240.00043 * 13 12 11 37 37 H 0.96697 * 113.99949 * 299.99883 * 14 13 12 38 38 H 1.09001 * 110.22441 * 303.89841 * 20 8 7 39 39 H 1.08998 * 110.22485 * 181.90619 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4962 1.7520 0.0000 4 6 2.4928 -0.8973 1.4990 5 6 3.9250 -0.5087 1.8840 6 6 4.8798 -0.3858 0.6793 7 6 4.5553 -1.5169 -0.2973 8 7 3.9163 -0.8575 -1.4392 9 6 4.5055 -1.2477 -2.6315 10 7 3.8594 -1.6233 -3.6915 11 6 4.5834 -1.9589 -4.7444 12 6 5.9013 -1.8718 -4.5619 13 6 6.9595 -2.1961 -5.5846 14 8 7.7520 -1.0337 -5.8353 15 14 6.1454 -2.7465 -7.1674 16 1 5.2770 -1.6574 -7.6821 17 1 7.1883 -3.0667 -8.1750 18 1 5.3223 -3.9546 -6.9066 19 16 6.1899 -1.3113 -2.9169 20 6 2.5050 -0.9148 -1.5282 21 1 -0.3634 0.4998 0.8980 22 1 -0.3633 0.5279 -0.8818 23 1 -0.3633 -1.0275 -0.0162 24 1 3.5777 1.7475 -0.1355 25 1 2.0302 2.3068 -0.8144 26 1 2.2511 2.2270 0.9500 27 1 1.8336 -0.6794 2.3393 28 1 2.4622 -1.9692 1.3032 29 1 3.8979 0.4479 2.4059 30 1 4.3192 -1.2628 2.5653 31 1 5.9124 -0.4753 1.0169 32 1 4.7335 0.5770 0.1898 33 1 3.8691 -2.2287 0.1619 34 1 5.4681 -2.0216 -0.6132 35 1 4.1434 -2.2818 -5.6764 36 1 7.5967 -2.9958 -5.2070 37 1 7.2491 -0.2804 -6.1741 38 1 2.1685 -1.9515 -1.5159 39 1 2.1642 -0.4173 -2.4361 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_16945878_15704118.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:58:28 Heat of formation + Delta-G solvation = -9.837254 kcal Electronic energy + Delta-G solvation = -19170.215732 eV Core-core repulsion = 16363.562291 eV Total energy + Delta-G solvation = -2806.653441 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 286.104 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.20723 -39.29452 -37.72963 -35.45993 -31.65967 -30.12164 -29.05241 -28.50334 -27.67420 -26.42096 -24.98451 -23.60969 -21.11668 -20.52653 -19.69936 -17.86039 -17.49548 -16.72070 -16.43915 -16.05832 -15.91981 -15.53687 -15.25446 -15.09035 -14.56342 -14.33237 -14.17508 -13.93373 -13.74188 -13.43207 -13.26456 -13.12829 -12.96211 -12.73364 -12.38142 -12.16128 -12.14478 -12.07893 -11.96505 -11.71593 -11.10650 -10.91898 -10.58521 -10.52238 -10.47026 -10.43091 -10.05094 -8.91563 -0.20017 0.17061 0.74388 1.30832 1.41119 1.47454 1.57158 1.74265 1.77449 1.86126 1.90187 2.48757 2.69389 3.38469 3.51734 3.77995 3.83318 3.88271 4.14649 4.21832 4.36591 4.42022 4.48469 4.57433 4.61142 4.67112 4.67740 4.76106 4.77089 4.81784 4.93742 5.02420 5.08849 5.18486 5.21654 5.37800 5.43899 5.66086 5.76169 5.89770 6.46432 6.87705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.449 4.449 2 Si 1.022 2.978 3 C -0.442 4.442 4 C -0.414 4.414 5 C -0.103 4.103 6 C -0.138 4.138 7 C 0.050 3.950 8 N -0.445 5.445 9 C 0.225 3.775 10 N -0.520 5.520 11 C 0.069 3.931 12 C -0.292 4.292 13 C -0.040 4.040 14 O -0.538 6.538 15 Si 0.958 3.042 16 H -0.248 1.248 17 H -0.247 1.247 18 H -0.248 1.248 19 S 0.161 5.839 20 C -0.211 4.211 21 H 0.072 0.928 22 H 0.072 0.928 23 H 0.070 0.930 24 H 0.078 0.922 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.076 0.924 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.169 0.831 36 H 0.119 0.881 37 H 0.378 0.622 38 H 0.054 0.946 39 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.376 0.024 2.054 2.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.558 4.558 2 Si 1.215 2.785 3 C -0.550 4.550 4 C -0.499 4.499 5 C -0.141 4.141 6 C -0.176 4.176 7 C -0.076 4.076 8 N -0.164 5.164 9 C -0.143 4.143 10 N -0.241 5.241 11 C -0.084 4.084 12 C -0.415 4.415 13 C -0.152 4.152 14 O -0.343 6.343 15 Si 0.778 3.222 16 H -0.171 1.171 17 H -0.170 1.170 18 H -0.171 1.171 19 S 0.414 5.586 20 C -0.386 4.386 21 H 0.091 0.909 22 H 0.091 0.909 23 H 0.089 0.911 24 H 0.097 0.903 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.096 0.904 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.095 0.905 32 H 0.112 0.888 33 H 0.103 0.897 34 H 0.099 0.901 35 H 0.186 0.814 36 H 0.137 0.863 37 H 0.225 0.775 38 H 0.073 0.927 39 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 0.076 -0.005 2.295 2.296 hybrid contribution -0.921 -0.516 -0.696 1.265 sum -0.845 -0.521 1.599 1.882 Atomic orbital electron populations 1.26095 1.20245 1.04659 1.04773 0.79396 0.66436 0.67876 0.64821 1.26171 1.06955 1.17746 1.04138 1.26261 1.00747 1.07888 1.15053 1.21326 0.93491 1.01899 0.97373 1.22357 1.00016 0.99528 0.95652 1.22830 0.99163 0.96457 0.89140 1.56048 1.07333 1.54123 0.98899 1.25656 0.95012 0.97714 0.95905 1.66769 1.38328 1.18764 1.00242 1.21427 0.89009 1.00057 0.97888 1.26249 0.98947 1.16188 1.00130 1.24398 0.95219 0.92285 1.03341 1.86522 1.36909 1.23182 1.87646 0.85609 0.79575 0.81322 0.75720 1.17107 1.17044 1.17097 1.84008 1.04355 1.63188 1.07060 1.26346 0.87536 1.07429 1.17278 0.90899 0.90919 0.91120 0.90275 0.91425 0.91301 0.90414 0.91008 0.91830 0.92355 0.90509 0.88778 0.89696 0.90109 0.81443 0.86309 0.77459 0.92745 0.88054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.70 8.65 101.05 0.87 1.57 16 2 Si 1.02 -2.41 10.69 -169.99 -1.82 -4.22 16 3 C -0.44 0.57 8.56 101.05 0.87 1.44 16 4 C -0.41 0.93 4.24 37.32 0.16 1.09 16 5 C -0.10 0.21 5.52 -25.94 -0.14 0.07 16 6 C -0.14 0.26 5.68 -26.14 -0.15 0.11 16 7 C 0.05 -0.05 5.37 -4.07 -0.02 -0.07 16 8 N -0.45 -0.26 3.07 -115.67 -0.36 -0.61 16 9 C 0.22 0.55 6.78 -87.68 -0.59 -0.05 16 10 N -0.52 -1.96 9.31 -15.21 -0.14 -2.11 16 11 C 0.07 0.16 10.07 -19.14 -0.19 -0.03 16 12 C -0.29 -0.41 5.93 -36.02 -0.21 -0.62 16 13 C -0.04 0.00 3.08 36.01 0.11 0.11 16 14 O -0.54 -0.29 12.88 -35.23 -0.45 -0.74 16 15 Si 0.96 -0.66 25.77 -169.99 -4.38 -5.04 16 16 H -0.25 0.09 7.11 56.52 0.40 0.49 16 17 H -0.25 -0.11 7.11 56.52 0.40 0.30 16 18 H -0.25 0.02 7.11 56.52 0.40 0.42 16 19 S 0.16 0.22 21.66 -107.50 -2.33 -2.11 16 20 C -0.21 -0.03 3.99 57.26 0.23 0.20 16 21 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 22 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 23 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 24 H 0.08 -0.07 5.56 -51.93 -0.29 -0.36 16 25 H 0.07 -0.06 7.96 -51.93 -0.41 -0.47 16 26 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 27 H 0.08 -0.19 7.93 -51.93 -0.41 -0.60 16 28 H 0.07 -0.16 6.63 -51.93 -0.34 -0.51 16 29 H 0.06 -0.14 8.14 -51.92 -0.42 -0.56 16 30 H 0.06 -0.11 8.14 -51.93 -0.42 -0.54 16 31 H 0.08 -0.19 8.14 -51.93 -0.42 -0.61 16 32 H 0.09 -0.14 4.78 -51.93 -0.25 -0.39 16 33 H 0.08 -0.14 5.52 -51.92 -0.29 -0.42 16 34 H 0.08 -0.08 6.43 -51.94 -0.33 -0.42 16 35 H 0.17 0.11 5.85 -52.49 -0.31 -0.20 16 36 H 0.12 -0.11 7.96 -51.93 -0.41 -0.52 16 37 H 0.38 -0.94 8.70 45.56 0.40 -0.54 16 38 H 0.05 0.03 8.02 -51.93 -0.42 -0.38 16 39 H 0.10 0.14 7.47 -51.93 -0.39 -0.25 16 LS Contribution 311.65 15.07 4.70 4.70 Total: 0.00 -4.94 311.65 -9.03 -13.97 By element: Atomic # 1 Polarization: -2.48 SS G_CDS: -5.17 Total: -7.65 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: 0.92 Total: 3.82 kcal Atomic # 7 Polarization: -2.22 SS G_CDS: -0.50 Total: -2.72 kcal Atomic # 8 Polarization: -0.29 SS G_CDS: -0.45 Total: -0.74 kcal Atomic # 14 Polarization: -3.07 SS G_CDS: -6.20 Total: -9.27 kcal Atomic # 16 Polarization: 0.22 SS G_CDS: -2.33 Total: -2.11 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -4.94 -9.03 -13.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16945878_15704118.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.133 kcal (2) G-P(sol) polarization free energy of solvation -4.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds