Wall clock time and date at job start Mon Mar 8 2021 06:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86299 * 1 3 3 C 1.86295 * 109.87036 * 2 1 4 4 C 1.85706 * 109.82332 * 120.90457 * 2 1 3 5 5 C 1.53314 * 113.39484 * 202.17661 * 4 2 1 6 6 C 1.54209 * 113.73069 * 317.44445 * 5 4 2 7 7 C 1.52921 * 107.97019 * 320.32808 * 6 5 4 8 8 N 1.46531 * 104.91132 * 108.73783 * 7 6 5 9 9 C 1.38606 * 110.99743 * 129.61462 * 8 7 6 10 10 N 1.29688 * 124.95223 * 132.65726 * 9 8 7 11 11 C 1.32115 * 116.87004 * 179.81127 * 10 9 8 12 12 C 1.33328 * 114.57878 * 0.48173 * 11 10 9 13 13 C 1.50701 * 125.95501 * 179.75252 * 12 11 10 14 14 O 1.42900 * 109.47311 * 119.99381 * 13 12 11 15 15 Si 1.86303 * 109.46729 * 359.97438 * 13 12 11 16 16 H 1.48495 * 109.47324 * 60.00149 * 15 13 12 17 17 H 1.48498 * 109.46727 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47229 * 299.99750 * 15 13 12 19 19 S 1.70964 * 124.95009 * 312.96453 * 9 8 7 20 20 C 1.41527 * 117.74970 * 259.08387 * 8 7 6 21 21 H 1.09005 * 109.47338 * 299.09851 * 1 2 3 22 22 H 1.09005 * 109.47096 * 59.09490 * 1 2 3 23 23 H 1.08997 * 109.47083 * 179.09537 * 1 2 3 24 24 H 1.08999 * 109.47185 * 187.57723 * 3 2 1 25 25 H 1.08999 * 109.47243 * 307.58230 * 3 2 1 26 26 H 1.09002 * 109.47062 * 67.58022 * 3 2 1 27 27 H 1.09004 * 108.70145 * 323.19210 * 4 2 1 28 28 H 1.09006 * 108.70130 * 81.17034 * 4 2 1 29 29 H 1.09007 * 108.62704 * 78.53880 * 5 4 2 30 30 H 1.09002 * 108.63366 * 196.34309 * 5 4 2 31 31 H 1.09004 * 109.75997 * 200.71197 * 6 5 4 32 32 H 1.09000 * 109.76317 * 79.94923 * 6 5 4 33 33 H 1.09008 * 110.34136 * 349.89735 * 7 6 5 34 34 H 1.08987 * 110.48279 * 227.65733 * 7 6 5 35 35 H 1.08000 * 122.71170 * 180.22683 * 11 10 9 36 36 H 1.09004 * 109.46966 * 240.00043 * 13 12 11 37 37 H 0.96697 * 113.99949 * 299.99883 * 14 13 12 38 38 H 1.09001 * 110.22441 * 303.89841 * 20 8 7 39 39 H 1.08998 * 110.22485 * 181.90619 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4962 1.7520 0.0000 4 6 2.4928 -0.8973 1.4990 5 6 3.9250 -0.5087 1.8840 6 6 4.8798 -0.3858 0.6793 7 6 4.5553 -1.5169 -0.2973 8 7 3.9163 -0.8575 -1.4392 9 6 4.5055 -1.2477 -2.6315 10 7 3.8594 -1.6233 -3.6915 11 6 4.5834 -1.9589 -4.7444 12 6 5.9013 -1.8718 -4.5619 13 6 6.9595 -2.1961 -5.5846 14 8 7.7520 -1.0337 -5.8353 15 14 6.1454 -2.7465 -7.1674 16 1 5.2770 -1.6574 -7.6821 17 1 7.1883 -3.0667 -8.1750 18 1 5.3223 -3.9546 -6.9066 19 16 6.1899 -1.3113 -2.9169 20 6 2.5050 -0.9148 -1.5282 21 1 -0.3634 0.4998 0.8980 22 1 -0.3633 0.5279 -0.8818 23 1 -0.3633 -1.0275 -0.0162 24 1 3.5777 1.7475 -0.1355 25 1 2.0302 2.3068 -0.8144 26 1 2.2511 2.2270 0.9500 27 1 1.8336 -0.6794 2.3393 28 1 2.4622 -1.9692 1.3032 29 1 3.8979 0.4479 2.4059 30 1 4.3192 -1.2628 2.5653 31 1 5.9124 -0.4753 1.0169 32 1 4.7335 0.5770 0.1898 33 1 3.8691 -2.2287 0.1619 34 1 5.4681 -2.0216 -0.6132 35 1 4.1434 -2.2818 -5.6764 36 1 7.5967 -2.9958 -5.2070 37 1 7.2491 -0.2804 -6.1741 38 1 2.1685 -1.9515 -1.5159 39 1 2.1642 -0.4173 -2.4361 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_16945878_15704118.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:58:27 Heat of formation + Delta-G solvation = -2.697116 kcal Electronic energy + Delta-G solvation = -19169.906112 eV Core-core repulsion = 16363.562291 eV Total energy + Delta-G solvation = -2806.343821 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 286.104 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.29332 -39.30728 -37.74411 -35.36180 -31.73091 -30.02307 -28.92958 -28.38381 -27.71872 -26.37754 -24.97730 -23.64338 -20.97690 -20.59844 -19.76980 -17.86966 -17.56924 -16.74357 -16.42208 -16.06556 -15.90567 -15.52231 -15.22385 -14.99430 -14.61013 -14.30583 -14.09807 -13.84197 -13.63293 -13.30768 -13.16413 -13.06537 -12.96615 -12.63631 -12.40534 -12.16368 -12.06028 -11.98618 -11.93226 -11.60241 -11.06162 -10.80768 -10.62395 -10.58422 -10.45642 -10.34582 -10.16580 -8.98280 -0.31489 0.08584 0.64745 1.30711 1.45204 1.50832 1.67721 1.69675 1.90152 1.92666 1.93772 2.59126 2.69487 3.43090 3.51246 3.76038 3.91085 3.96372 4.28924 4.31706 4.34638 4.51224 4.55421 4.56381 4.71332 4.78227 4.79846 4.82226 4.86979 4.89631 5.02208 5.03498 5.20773 5.34875 5.37886 5.54426 5.58726 5.70863 5.79475 5.88577 6.59239 6.76433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.461 4.461 2 Si 1.085 2.915 3 C -0.454 4.454 4 C -0.418 4.418 5 C -0.104 4.104 6 C -0.136 4.136 7 C 0.045 3.955 8 N -0.443 5.443 9 C 0.213 3.787 10 N -0.549 5.549 11 C 0.054 3.946 12 C -0.291 4.291 13 C -0.041 4.041 14 O -0.550 6.550 15 Si 0.996 3.004 16 H -0.252 1.252 17 H -0.261 1.261 18 H -0.256 1.256 19 S 0.170 5.830 20 C -0.226 4.226 21 H 0.077 0.923 22 H 0.068 0.932 23 H 0.070 0.930 24 H 0.075 0.925 25 H 0.060 0.940 26 H 0.074 0.926 27 H 0.085 0.915 28 H 0.074 0.926 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.081 0.919 35 H 0.178 0.822 36 H 0.127 0.873 37 H 0.390 0.610 38 H 0.046 0.954 39 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.175 0.077 2.863 2.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.569 4.569 2 Si 1.273 2.727 3 C -0.561 4.561 4 C -0.504 4.504 5 C -0.142 4.142 6 C -0.174 4.174 7 C -0.080 4.080 8 N -0.162 5.162 9 C -0.155 4.155 10 N -0.271 5.271 11 C -0.098 4.098 12 C -0.414 4.414 13 C -0.153 4.153 14 O -0.357 6.357 15 Si 0.817 3.183 16 H -0.176 1.176 17 H -0.185 1.185 18 H -0.180 1.180 19 S 0.424 5.576 20 C -0.398 4.398 21 H 0.096 0.904 22 H 0.087 0.913 23 H 0.089 0.911 24 H 0.094 0.906 25 H 0.080 0.920 26 H 0.094 0.906 27 H 0.104 0.896 28 H 0.092 0.908 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.103 0.897 32 H 0.109 0.891 33 H 0.110 0.890 34 H 0.099 0.901 35 H 0.195 0.805 36 H 0.145 0.855 37 H 0.239 0.761 38 H 0.064 0.936 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.281 0.057 3.090 3.103 hybrid contribution -0.976 -0.517 -0.968 1.469 sum -0.695 -0.460 2.121 2.279 Atomic orbital electron populations 1.26234 1.21108 1.04707 1.04851 0.78467 0.65107 0.66177 0.62901 1.26323 1.06783 1.18773 1.04244 1.26285 1.00875 1.08033 1.15175 1.21341 0.93402 1.02237 0.97199 1.22355 1.00693 0.98868 0.95479 1.22960 0.99247 0.96993 0.88757 1.56185 1.07467 1.53892 0.98704 1.25979 0.95637 0.97546 0.96315 1.66776 1.39379 1.19883 1.01040 1.21637 0.89463 1.00603 0.98140 1.26453 0.99014 1.15584 1.00384 1.24536 0.95066 0.92365 1.03355 1.86490 1.37626 1.23833 1.87756 0.85059 0.78392 0.80434 0.74438 1.17595 1.18544 1.18036 1.83893 1.03581 1.63054 1.07119 1.26654 0.87561 1.07297 1.18306 0.90365 0.91324 0.91092 0.90619 0.92039 0.90649 0.89643 0.90761 0.91390 0.92151 0.89662 0.89131 0.88957 0.90108 0.80509 0.85488 0.76105 0.93561 0.89801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.45 8.65 113.37 0.98 2.44 16 2 Si 1.08 -5.08 10.69 68.60 0.73 -4.35 16 3 C -0.45 1.16 8.56 113.37 0.97 2.13 16 4 C -0.42 2.24 4.24 72.09 0.31 2.55 16 5 C -0.10 0.52 5.52 31.11 0.17 0.69 16 6 C -0.14 0.56 5.68 30.98 0.18 0.74 16 7 C 0.05 -0.08 5.37 86.35 0.46 0.38 16 8 N -0.44 -0.87 3.07 -519.88 -1.60 -2.47 16 9 C 0.21 1.26 6.78 179.32 1.22 2.48 16 10 N -0.55 -4.91 9.31 -202.03 -1.88 -6.79 16 11 C 0.05 0.30 10.07 83.54 0.84 1.14 16 12 C -0.29 -0.97 5.93 24.58 0.15 -0.82 16 13 C -0.04 0.00 3.08 71.24 0.22 0.22 16 14 O -0.55 -0.54 12.88 -148.98 -1.92 -2.46 16 15 Si 1.00 -1.21 25.77 68.60 1.77 0.55 16 16 H -0.25 0.16 7.11 99.48 0.71 0.87 16 17 H -0.26 -0.27 7.11 99.48 0.71 0.43 16 18 H -0.26 -0.03 7.11 99.48 0.71 0.68 16 19 S 0.17 0.56 21.66 -56.49 -1.22 -0.67 16 20 C -0.23 -0.32 3.99 128.67 0.51 0.19 16 21 H 0.08 -0.31 7.96 -2.38 -0.02 -0.33 16 22 H 0.07 -0.15 7.96 -2.38 -0.02 -0.17 16 23 H 0.07 -0.21 7.96 -2.39 -0.02 -0.23 16 24 H 0.07 -0.13 5.56 -2.39 -0.01 -0.14 16 25 H 0.06 -0.07 7.96 -2.39 -0.02 -0.09 16 26 H 0.07 -0.28 7.96 -2.39 -0.02 -0.30 16 27 H 0.08 -0.54 7.93 -2.39 -0.02 -0.56 16 28 H 0.07 -0.40 6.63 -2.38 -0.02 -0.42 16 29 H 0.07 -0.38 8.14 -2.38 -0.02 -0.40 16 30 H 0.06 -0.30 8.14 -2.39 -0.02 -0.32 16 31 H 0.08 -0.48 8.14 -2.38 -0.02 -0.50 16 32 H 0.09 -0.28 4.78 -2.39 -0.01 -0.30 16 33 H 0.09 -0.31 5.52 -2.38 -0.01 -0.33 16 34 H 0.08 -0.15 6.43 -2.39 -0.02 -0.16 16 35 H 0.18 0.40 5.85 -2.91 -0.02 0.38 16 36 H 0.13 -0.26 7.96 -2.39 -0.02 -0.27 16 37 H 0.39 -1.92 8.70 -74.06 -0.64 -2.56 16 38 H 0.05 0.12 8.02 -2.39 -0.02 0.10 16 39 H 0.08 0.40 7.47 -2.39 -0.02 0.38 16 Total: 0.00 -11.32 311.65 3.05 -8.27 By element: Atomic # 1 Polarization: -5.41 SS G_CDS: 1.16 Total: -4.24 kcal Atomic # 6 Polarization: 6.14 SS G_CDS: 6.00 Total: 12.14 kcal Atomic # 7 Polarization: -5.78 SS G_CDS: -3.48 Total: -9.26 kcal Atomic # 8 Polarization: -0.54 SS G_CDS: -1.92 Total: -2.46 kcal Atomic # 14 Polarization: -6.29 SS G_CDS: 2.50 Total: -3.79 kcal Atomic # 16 Polarization: 0.56 SS G_CDS: -1.22 Total: -0.67 kcal Total: -11.32 3.05 -8.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16945878_15704118.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.578 kcal (2) G-P(sol) polarization free energy of solvation -11.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -8.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds