Wall clock time and date at job start Mon Mar 8 2021 06:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33336 * 125.94884 * 2 1 4 4 C 1.50703 * 122.70897 * 359.96536 * 3 2 1 5 5 O 1.42900 * 109.47403 * 330.00785 * 4 3 2 6 6 Si 1.86299 * 109.46798 * 210.00353 * 4 3 2 7 7 H 1.48499 * 109.47282 * 60.00915 * 6 4 3 8 8 H 1.48509 * 109.46831 * 180.02562 * 6 4 3 9 9 H 1.48503 * 109.47376 * 300.00220 * 6 4 3 10 10 N 1.32115 * 114.57649 * 179.97438 * 3 2 1 11 11 C 1.29685 * 116.87141 * 359.97438 * 10 3 2 12 12 N 1.38615 * 124.95373 * 179.97438 * 11 10 3 13 13 C 1.37572 * 112.78223 * 56.04284 * 12 11 10 14 14 C 1.51885 * 120.42293 * 189.35581 * 13 12 11 15 15 C 1.52389 * 106.58363 * 281.67490 * 14 13 12 16 16 C 1.55271 * 106.95078 * 110.10315 * 15 14 13 17 17 Si 1.88453 * 107.58191 * 299.27191 * 16 15 14 18 18 C 1.86119 * 108.85676 * 220.71182 * 17 16 15 19 19 C 1.85647 * 109.73005 * 100.81776 * 17 16 15 20 20 C 1.48155 * 111.30314 * 191.66231 * 12 11 10 21 21 S 1.70971 * 110.09784 * 0.24477 * 11 10 3 22 22 H 1.09001 * 109.46908 * 90.01321 * 1 2 3 23 23 H 1.09001 * 109.47120 * 210.00277 * 1 2 3 24 24 H 1.08994 * 109.47535 * 330.00883 * 1 2 3 25 25 H 1.09002 * 109.46277 * 90.00584 * 4 3 2 26 26 H 0.96701 * 113.99751 * 299.99582 * 5 4 3 27 27 H 1.10182 * 108.34796 * 312.39171 * 13 12 11 28 28 H 1.10073 * 108.56351 * 65.79568 * 13 12 11 29 29 H 1.08525 * 111.18409 * 42.84186 * 14 13 12 30 30 H 1.09645 * 109.47133 * 163.44542 * 14 13 12 31 31 H 1.08949 * 110.25578 * 350.43977 * 15 14 13 32 32 H 1.09115 * 109.95646 * 229.33310 * 15 14 13 33 33 H 1.08760 * 110.00991 * 180.31983 * 16 15 14 34 34 H 1.08718 * 110.08100 * 58.32155 * 16 15 14 35 35 H 1.09009 * 109.46918 * 179.82404 * 18 17 16 36 36 H 1.09001 * 109.47189 * 299.82198 * 18 17 16 37 37 H 1.09002 * 109.47289 * 59.82529 * 18 17 16 38 38 H 1.09002 * 109.46889 * 299.19678 * 19 17 16 39 39 H 1.09000 * 109.46960 * 59.19712 * 19 17 16 40 40 H 1.09000 * 109.47414 * 179.19926 * 19 17 16 41 41 H 1.08977 * 109.98539 * 275.21873 * 20 12 11 42 42 H 1.09108 * 109.75708 * 35.41805 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2897 1.0794 0.0000 4 6 1.7413 2.4831 -0.0008 5 8 0.4814 2.5019 -0.6749 6 14 2.9325 3.6147 -0.8789 7 1 3.1131 3.1532 -2.2788 8 1 2.3924 4.9980 -0.8791 9 1 4.2418 3.5951 -0.1784 10 7 3.5850 0.8189 0.0005 11 6 3.9315 -0.4308 0.0015 12 7 5.2385 -0.8925 0.0017 13 6 5.9770 -0.4010 1.0532 14 6 7.4789 -0.6205 1.1074 15 6 7.6922 -2.0529 1.5817 16 6 8.2443 -2.8532 0.3711 17 14 6.9499 -2.7816 -0.9967 18 6 6.8387 -4.4531 -1.8078 19 6 7.4399 -1.5102 -2.2575 20 6 5.2958 -2.3466 -0.2762 21 16 2.5413 -1.4260 -0.0050 22 1 -0.3633 -0.0002 -1.0277 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3634 0.8900 0.5137 25 1 1.6087 2.8218 1.0268 26 1 0.5240 2.2118 -1.5963 27 1 5.8143 0.6871 1.1126 28 1 5.5611 -0.8010 1.9906 29 1 7.9340 -0.4597 0.1354 30 1 7.9238 0.0729 1.8308 31 1 6.7492 -2.4839 1.9161 32 1 8.4155 -2.0709 2.3986 33 1 8.4102 -3.8900 0.6547 34 1 9.1682 -2.4032 0.0161 35 1 6.0897 -4.4237 -2.5993 36 1 7.8072 -4.7155 -2.2336 37 1 6.5540 -5.1989 -1.0656 38 1 7.5000 -0.5312 -1.7819 39 1 8.4116 -1.7705 -2.6772 40 1 6.6959 -1.4823 -3.0536 41 1 5.1488 -2.9081 0.6462 42 1 4.5157 -2.6168 -0.9895 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_16945878_15704122.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:58:35 Heat of formation + Delta-G solvation = -18.431640 kcal Electronic energy + Delta-G solvation = -21266.014441 eV Core-core repulsion = 18303.450701 eV Total energy + Delta-G solvation = -2962.563740 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 300.119 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.41828 -39.75819 -37.49955 -35.49713 -32.81225 -30.45536 -29.58464 -29.14800 -28.47611 -27.18573 -25.57683 -25.02266 -22.77885 -21.84160 -20.23371 -19.27170 -18.08002 -17.50367 -16.78355 -16.27864 -16.04043 -15.82418 -15.54432 -14.92855 -14.74083 -14.71043 -14.41890 -13.98857 -13.96631 -13.81460 -13.70401 -13.57147 -13.36616 -13.31607 -13.25090 -12.97800 -12.72655 -12.34361 -12.28476 -12.05335 -11.98977 -11.77629 -11.45916 -11.29333 -10.95103 -10.70979 -10.57958 -10.45873 -10.18764 -9.89351 -8.72206 -0.15888 0.28299 0.76974 1.25205 1.43019 1.66545 1.67652 1.71677 1.76806 1.84896 2.20687 2.31495 2.47281 3.35350 3.50928 3.67175 3.88843 3.99407 4.05178 4.12617 4.32037 4.36912 4.45474 4.49903 4.57799 4.61893 4.63074 4.66674 4.74015 4.77639 4.80649 4.81352 4.92576 4.99132 5.07622 5.12852 5.21709 5.28954 5.34863 5.40896 5.60598 5.61983 6.08182 6.45062 6.87717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.216 4.216 3 C 0.044 3.956 4 C -0.046 4.046 5 O -0.535 6.535 6 Si 0.978 3.022 7 H -0.259 1.259 8 H -0.261 1.261 9 H -0.244 1.244 10 N -0.501 5.501 11 C 0.255 3.745 12 N -0.445 5.445 13 C 0.074 3.926 14 C -0.127 4.127 15 C -0.117 4.117 16 C -0.406 4.406 17 Si 1.035 2.965 18 C -0.452 4.452 19 C -0.444 4.444 20 C -0.243 4.243 21 S 0.090 5.910 22 H 0.073 0.927 23 H 0.060 0.940 24 H 0.096 0.904 25 H 0.124 0.876 26 H 0.377 0.623 27 H 0.085 0.915 28 H 0.025 0.975 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.070 0.930 38 H 0.076 0.924 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.070 0.930 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.079 -2.878 -0.027 3.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.338 4.338 3 C -0.087 4.087 4 C -0.159 4.159 5 O -0.339 6.339 6 Si 0.800 3.200 7 H -0.183 1.183 8 H -0.185 1.185 9 H -0.167 1.167 10 N -0.222 5.222 11 C -0.114 4.114 12 N -0.163 5.163 13 C -0.054 4.054 14 C -0.165 4.165 15 C -0.154 4.154 16 C -0.492 4.492 17 Si 1.228 2.772 18 C -0.561 4.561 19 C -0.552 4.552 20 C -0.413 4.413 21 S 0.342 5.658 22 H 0.091 0.909 23 H 0.079 0.921 24 H 0.114 0.886 25 H 0.142 0.858 26 H 0.224 0.776 27 H 0.104 0.896 28 H 0.043 0.957 29 H 0.105 0.895 30 H 0.103 0.897 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.099 0.901 35 H 0.090 0.910 36 H 0.094 0.906 37 H 0.090 0.910 38 H 0.095 0.905 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 1.943 -2.632 -0.122 3.274 hybrid contribution -0.744 -0.118 0.278 0.804 sum 1.199 -2.750 0.156 3.004 Atomic orbital electron populations 1.20292 0.86237 1.03463 1.02948 1.25387 1.01635 0.93390 1.13385 1.20317 0.86961 0.97484 1.03921 1.24460 0.92626 0.95128 1.03648 1.86512 1.28807 1.89617 1.28952 0.85197 0.78133 0.76946 0.79759 1.18269 1.18539 1.16734 1.65982 1.16955 1.17514 1.21783 1.24844 0.93170 0.91613 1.01806 1.51830 1.05816 1.13816 1.44870 1.20116 0.94253 1.01834 0.89235 1.21632 0.93453 0.97871 1.03553 1.21778 1.01219 0.94569 0.97856 1.26728 1.10790 1.02827 1.08863 0.79075 0.64085 0.66828 0.67255 1.26143 1.05018 1.17193 1.07707 1.26069 1.05191 1.12259 1.11666 1.27602 1.21567 0.85198 1.06947 1.84179 0.98549 1.11661 1.71449 0.90863 0.92092 0.88595 0.85819 0.77588 0.89633 0.95692 0.89505 0.89734 0.91704 0.91541 0.90630 0.90080 0.91033 0.90613 0.91045 0.90488 0.91343 0.91235 0.91183 0.88621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 0.01 8.95 36.01 0.32 0.33 16 2 C -0.22 -0.40 6.50 -36.02 -0.23 -0.63 16 3 C 0.04 0.12 5.92 -84.18 -0.50 -0.38 16 4 C -0.05 -0.05 2.82 36.01 0.10 0.05 16 5 O -0.53 -0.09 9.90 -35.23 -0.35 -0.44 16 6 Si 0.98 1.79 27.37 -169.99 -4.65 -2.86 16 7 H -0.26 -0.76 7.11 56.52 0.40 -0.35 16 8 H -0.26 -0.61 7.11 56.52 0.40 -0.20 16 9 H -0.24 -0.84 7.11 56.52 0.40 -0.44 16 10 N -0.50 -1.95 8.39 -11.36 -0.10 -2.05 16 11 C 0.25 0.69 6.78 -87.68 -0.59 0.10 16 12 N -0.45 -0.45 3.60 -119.11 -0.43 -0.88 16 13 C 0.07 0.03 4.36 -9.12 -0.04 -0.01 16 14 C -0.13 0.17 5.56 -27.61 -0.15 0.01 16 15 C -0.12 0.20 5.62 -25.84 -0.15 0.06 16 16 C -0.41 0.96 4.93 38.36 0.19 1.15 16 17 Si 1.04 -2.85 10.34 -169.99 -1.76 -4.60 16 18 C -0.45 1.05 8.64 101.05 0.87 1.92 16 19 C -0.44 0.48 8.56 101.05 0.87 1.34 16 20 C -0.24 0.27 3.54 60.76 0.22 0.49 16 21 S 0.09 0.13 21.04 -107.50 -2.26 -2.13 16 22 H 0.07 -0.09 8.14 -51.93 -0.42 -0.51 16 23 H 0.06 -0.03 8.14 -51.93 -0.42 -0.45 16 24 H 0.10 0.02 6.62 -51.93 -0.34 -0.32 16 25 H 0.12 0.02 7.96 -51.93 -0.41 -0.40 16 26 H 0.38 -0.93 8.68 45.56 0.40 -0.54 16 27 H 0.09 0.16 7.58 -51.25 -0.39 -0.23 16 28 H 0.03 0.02 7.60 -51.32 -0.39 -0.37 16 29 H 0.09 -0.14 5.26 -52.20 -0.27 -0.41 16 30 H 0.08 -0.16 8.20 -51.56 -0.42 -0.59 16 31 H 0.06 -0.11 5.91 -51.96 -0.31 -0.42 16 32 H 0.07 -0.11 8.15 -51.86 -0.42 -0.53 16 33 H 0.07 -0.19 7.96 -52.06 -0.41 -0.61 16 34 H 0.08 -0.19 7.94 -52.09 -0.41 -0.61 16 35 H 0.07 -0.15 7.96 -51.92 -0.41 -0.57 16 36 H 0.07 -0.17 7.96 -51.93 -0.41 -0.59 16 37 H 0.07 -0.18 7.96 -51.93 -0.41 -0.59 16 38 H 0.08 -0.02 6.65 -51.93 -0.35 -0.36 16 39 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 40 H 0.07 -0.03 7.96 -51.93 -0.41 -0.44 16 41 H 0.07 -0.13 7.07 -51.94 -0.37 -0.50 16 42 H 0.10 -0.12 6.59 -51.87 -0.34 -0.46 16 LS Contribution 332.39 15.07 5.01 5.01 Total: 0.00 -4.73 332.39 -9.79 -14.52 By element: Atomic # 1 Polarization: -4.85 SS G_CDS: -6.16 Total: -11.01 kcal Atomic # 6 Polarization: 3.53 SS G_CDS: 0.90 Total: 4.44 kcal Atomic # 7 Polarization: -2.40 SS G_CDS: -0.52 Total: -2.92 kcal Atomic # 8 Polarization: -0.09 SS G_CDS: -0.35 Total: -0.44 kcal Atomic # 14 Polarization: -1.06 SS G_CDS: -6.41 Total: -7.47 kcal Atomic # 16 Polarization: 0.13 SS G_CDS: -2.26 Total: -2.13 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -4.73 -9.79 -14.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16945878_15704122.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.915 kcal (2) G-P(sol) polarization free energy of solvation -4.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds