Wall clock time and date at job start Mon Mar 8 2021 06:58:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33336 * 125.94884 * 2 1 4 4 C 1.50703 * 122.70897 * 359.96536 * 3 2 1 5 5 O 1.42900 * 109.47403 * 330.00785 * 4 3 2 6 6 Si 1.86299 * 109.46798 * 210.00353 * 4 3 2 7 7 H 1.48499 * 109.47282 * 60.00915 * 6 4 3 8 8 H 1.48509 * 109.46831 * 180.02562 * 6 4 3 9 9 H 1.48503 * 109.47376 * 300.00220 * 6 4 3 10 10 N 1.32115 * 114.57649 * 179.97438 * 3 2 1 11 11 C 1.29685 * 116.87141 * 359.97438 * 10 3 2 12 12 N 1.38615 * 124.95373 * 179.97438 * 11 10 3 13 13 C 1.37572 * 112.78223 * 56.04284 * 12 11 10 14 14 C 1.51885 * 120.42293 * 189.35581 * 13 12 11 15 15 C 1.52389 * 106.58363 * 281.67490 * 14 13 12 16 16 C 1.55271 * 106.95078 * 110.10315 * 15 14 13 17 17 Si 1.88453 * 107.58191 * 299.27191 * 16 15 14 18 18 C 1.86119 * 108.85676 * 220.71182 * 17 16 15 19 19 C 1.85647 * 109.73005 * 100.81776 * 17 16 15 20 20 C 1.48155 * 111.30314 * 191.66231 * 12 11 10 21 21 S 1.70971 * 110.09784 * 0.24477 * 11 10 3 22 22 H 1.09001 * 109.46908 * 90.01321 * 1 2 3 23 23 H 1.09001 * 109.47120 * 210.00277 * 1 2 3 24 24 H 1.08994 * 109.47535 * 330.00883 * 1 2 3 25 25 H 1.09002 * 109.46277 * 90.00584 * 4 3 2 26 26 H 0.96701 * 113.99751 * 299.99582 * 5 4 3 27 27 H 1.10182 * 108.34796 * 312.39171 * 13 12 11 28 28 H 1.10073 * 108.56351 * 65.79568 * 13 12 11 29 29 H 1.08525 * 111.18409 * 42.84186 * 14 13 12 30 30 H 1.09645 * 109.47133 * 163.44542 * 14 13 12 31 31 H 1.08949 * 110.25578 * 350.43977 * 15 14 13 32 32 H 1.09115 * 109.95646 * 229.33310 * 15 14 13 33 33 H 1.08760 * 110.00991 * 180.31983 * 16 15 14 34 34 H 1.08718 * 110.08100 * 58.32155 * 16 15 14 35 35 H 1.09009 * 109.46918 * 179.82404 * 18 17 16 36 36 H 1.09001 * 109.47189 * 299.82198 * 18 17 16 37 37 H 1.09002 * 109.47289 * 59.82529 * 18 17 16 38 38 H 1.09002 * 109.46889 * 299.19678 * 19 17 16 39 39 H 1.09000 * 109.46960 * 59.19712 * 19 17 16 40 40 H 1.09000 * 109.47414 * 179.19926 * 19 17 16 41 41 H 1.08977 * 109.98539 * 275.21873 * 20 12 11 42 42 H 1.09108 * 109.75708 * 35.41805 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2897 1.0794 0.0000 4 6 1.7413 2.4831 -0.0008 5 8 0.4814 2.5019 -0.6749 6 14 2.9325 3.6147 -0.8789 7 1 3.1131 3.1532 -2.2788 8 1 2.3924 4.9980 -0.8791 9 1 4.2418 3.5951 -0.1784 10 7 3.5850 0.8189 0.0005 11 6 3.9315 -0.4308 0.0015 12 7 5.2385 -0.8925 0.0017 13 6 5.9770 -0.4010 1.0532 14 6 7.4789 -0.6205 1.1074 15 6 7.6922 -2.0529 1.5817 16 6 8.2443 -2.8532 0.3711 17 14 6.9499 -2.7816 -0.9967 18 6 6.8387 -4.4531 -1.8078 19 6 7.4399 -1.5102 -2.2575 20 6 5.2958 -2.3466 -0.2762 21 16 2.5413 -1.4260 -0.0050 22 1 -0.3633 -0.0002 -1.0277 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3634 0.8900 0.5137 25 1 1.6087 2.8218 1.0268 26 1 0.5240 2.2118 -1.5963 27 1 5.8143 0.6871 1.1126 28 1 5.5611 -0.8010 1.9906 29 1 7.9340 -0.4597 0.1354 30 1 7.9238 0.0729 1.8308 31 1 6.7492 -2.4839 1.9161 32 1 8.4155 -2.0709 2.3986 33 1 8.4102 -3.8900 0.6547 34 1 9.1682 -2.4032 0.0161 35 1 6.0897 -4.4237 -2.5993 36 1 7.8072 -4.7155 -2.2336 37 1 6.5540 -5.1989 -1.0656 38 1 7.5000 -0.5312 -1.7819 39 1 8.4116 -1.7705 -2.6772 40 1 6.6959 -1.4823 -3.0536 41 1 5.1488 -2.9081 0.6462 42 1 4.5157 -2.6168 -0.9895 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_16945878_15704122.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:58:34 Heat of formation + Delta-G solvation = -9.994214 kcal Electronic energy + Delta-G solvation = -21265.648567 eV Core-core repulsion = 18303.450701 eV Total energy + Delta-G solvation = -2962.197866 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 300.119 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.51681 -39.79161 -37.53702 -35.42581 -32.86026 -30.37158 -29.63049 -29.02768 -28.33099 -27.12761 -25.62438 -25.06401 -22.73801 -21.78332 -20.31569 -19.36840 -18.15194 -17.55247 -16.85471 -16.28990 -16.06804 -15.94091 -15.46707 -14.87791 -14.81068 -14.71487 -14.34302 -13.95798 -13.86883 -13.75086 -13.62262 -13.51923 -13.34677 -13.18532 -13.16532 -12.88673 -12.79449 -12.41322 -12.28034 -12.20679 -11.95492 -11.89061 -11.38534 -11.23951 -10.84083 -10.79755 -10.62023 -10.31660 -10.27124 -9.99524 -8.79202 -0.28436 0.17602 0.65157 1.11267 1.45075 1.54326 1.58246 1.68346 1.86726 1.89201 2.02948 2.35351 2.60817 3.31963 3.48111 3.67699 3.93805 4.04067 4.13180 4.16437 4.27803 4.45578 4.50310 4.53260 4.60743 4.74680 4.79353 4.81469 4.82152 4.83914 4.84908 4.89009 4.99014 5.04510 5.10316 5.22095 5.30361 5.36939 5.52052 5.57404 5.62081 5.69540 6.04440 6.52737 6.78223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.221 4.221 3 C 0.028 3.972 4 C -0.034 4.034 5 O -0.535 6.535 6 Si 1.006 2.994 7 H -0.276 1.276 8 H -0.265 1.265 9 H -0.272 1.272 10 N -0.528 5.528 11 C 0.239 3.761 12 N -0.450 5.450 13 C 0.080 3.920 14 C -0.125 4.125 15 C -0.117 4.117 16 C -0.409 4.409 17 Si 1.093 2.907 18 C -0.460 4.460 19 C -0.460 4.460 20 C -0.259 4.259 21 S 0.108 5.892 22 H 0.086 0.914 23 H 0.066 0.934 24 H 0.094 0.906 25 H 0.133 0.867 26 H 0.388 0.612 27 H 0.064 0.936 28 H 0.021 0.979 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.065 0.935 39 H 0.072 0.928 40 H 0.060 0.940 41 H 0.079 0.921 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.820 -4.000 0.102 4.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.343 4.343 3 C -0.103 4.103 4 C -0.148 4.148 5 O -0.341 6.341 6 Si 0.831 3.169 7 H -0.201 1.201 8 H -0.190 1.190 9 H -0.197 1.197 10 N -0.251 5.251 11 C -0.130 4.130 12 N -0.168 5.168 13 C -0.049 4.049 14 C -0.163 4.163 15 C -0.155 4.155 16 C -0.496 4.496 17 Si 1.282 2.718 18 C -0.568 4.568 19 C -0.567 4.567 20 C -0.426 4.426 21 S 0.359 5.641 22 H 0.104 0.896 23 H 0.084 0.916 24 H 0.113 0.887 25 H 0.151 0.849 26 H 0.238 0.762 27 H 0.083 0.917 28 H 0.039 0.961 29 H 0.107 0.893 30 H 0.108 0.892 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.084 0.916 39 H 0.091 0.909 40 H 0.079 0.921 41 H 0.098 0.902 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.671 -3.738 -0.010 4.095 hybrid contribution -0.645 0.239 0.197 0.716 sum 1.026 -3.499 0.186 3.651 Atomic orbital electron populations 1.20336 0.84845 1.03633 1.03818 1.25690 1.02599 0.93314 1.12689 1.20534 0.86807 0.98343 1.04568 1.24293 0.92455 0.94044 1.03964 1.86491 1.28080 1.89608 1.29950 0.84812 0.76936 0.76791 0.78348 1.20089 1.18985 1.19736 1.65997 1.17864 1.18468 1.22779 1.25178 0.94170 0.91780 1.01830 1.51919 1.05199 1.14967 1.44734 1.20105 0.95312 1.00498 0.88988 1.21660 0.92074 0.98645 1.03951 1.21775 1.01397 0.94102 0.98209 1.26778 1.10978 1.03211 1.08588 0.78202 0.62405 0.65449 0.65745 1.26215 1.05169 1.17472 1.07921 1.26304 1.05360 1.12671 1.12315 1.27934 1.23093 0.83969 1.07649 1.84013 0.97797 1.11168 1.71108 0.89566 0.91560 0.88709 0.84925 0.76247 0.91745 0.96070 0.89264 0.89172 0.91579 0.91374 0.89837 0.89808 0.91160 0.90368 0.90439 0.91613 0.90858 0.92104 0.90225 0.88498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 0.06 8.95 71.24 0.64 0.70 16 2 C -0.22 -0.83 6.50 24.58 0.16 -0.67 16 3 C 0.03 0.17 5.92 41.41 0.25 0.41 16 4 C -0.03 -0.08 2.82 71.24 0.20 0.12 16 5 O -0.54 0.01 9.90 -148.98 -1.47 -1.46 16 6 Si 1.01 5.08 27.37 68.60 1.88 6.96 16 7 H -0.28 -2.08 7.11 99.48 0.71 -1.38 16 8 H -0.27 -1.44 7.11 99.48 0.71 -0.73 16 9 H -0.27 -2.59 7.11 99.48 0.71 -1.89 16 10 N -0.53 -4.90 8.39 -189.85 -1.59 -6.49 16 11 C 0.24 1.56 6.78 179.32 1.21 2.78 16 12 N -0.45 -1.35 3.60 -530.76 -1.91 -3.27 16 13 C 0.08 0.17 4.36 87.59 0.38 0.55 16 14 C -0.13 0.27 5.56 30.02 0.17 0.43 16 15 C -0.12 0.45 5.62 31.17 0.18 0.63 16 16 C -0.41 2.28 4.93 72.76 0.36 2.64 16 17 Si 1.09 -6.31 10.34 68.60 0.71 -5.60 16 18 C -0.46 2.53 8.64 113.37 0.98 3.51 16 19 C -0.46 0.68 8.56 113.37 0.97 1.65 16 20 C -0.26 0.55 3.54 127.45 0.45 1.01 16 21 S 0.11 0.34 21.04 -56.49 -1.19 -0.85 16 22 H 0.09 -0.30 8.14 -2.39 -0.02 -0.32 16 23 H 0.07 -0.12 8.14 -2.39 -0.02 -0.14 16 24 H 0.09 -0.03 6.62 -2.39 -0.02 -0.04 16 25 H 0.13 0.06 7.96 -2.39 -0.02 0.04 16 26 H 0.39 -2.07 8.68 -74.06 -0.64 -2.71 16 27 H 0.06 0.39 7.58 -1.75 -0.01 0.38 16 28 H 0.02 0.05 7.60 -1.81 -0.01 0.04 16 29 H 0.09 -0.23 5.26 -2.64 -0.01 -0.24 16 30 H 0.09 -0.30 8.20 -2.04 -0.02 -0.31 16 31 H 0.07 -0.26 5.91 -2.41 -0.01 -0.27 16 32 H 0.07 -0.26 8.15 -2.33 -0.02 -0.28 16 33 H 0.08 -0.55 7.96 -2.51 -0.02 -0.57 16 34 H 0.08 -0.47 7.94 -2.54 -0.02 -0.49 16 35 H 0.07 -0.34 7.96 -2.38 -0.02 -0.36 16 36 H 0.08 -0.43 7.96 -2.39 -0.02 -0.45 16 37 H 0.08 -0.49 7.96 -2.39 -0.02 -0.51 16 38 H 0.06 0.05 6.65 -2.39 -0.02 0.04 16 39 H 0.07 -0.20 7.96 -2.39 -0.02 -0.22 16 40 H 0.06 0.01 7.96 -2.39 -0.02 -0.01 16 41 H 0.08 -0.32 7.07 -2.40 -0.02 -0.34 16 42 H 0.10 -0.24 6.59 -2.33 -0.02 -0.25 16 Total: 0.00 -11.49 332.39 3.49 -7.99 By element: Atomic # 1 Polarization: -12.16 SS G_CDS: 1.13 Total: -11.03 kcal Atomic # 6 Polarization: 7.80 SS G_CDS: 5.94 Total: 13.75 kcal Atomic # 7 Polarization: -6.26 SS G_CDS: -3.50 Total: -9.76 kcal Atomic # 8 Polarization: 0.01 SS G_CDS: -1.47 Total: -1.46 kcal Atomic # 14 Polarization: -1.23 SS G_CDS: 2.59 Total: 1.36 kcal Atomic # 16 Polarization: 0.34 SS G_CDS: -1.19 Total: -0.85 kcal Total: -11.49 3.49 -7.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16945878_15704122.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.002 kcal (2) G-P(sol) polarization free energy of solvation -11.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -7.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds