Wall clock time and date at job start Mon Mar 8 2021 07:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86297 * 1 3 3 C 1.86305 * 109.90738 * 2 1 4 4 C 1.89743 * 109.85837 * 120.98967 * 2 1 3 5 5 C 1.47215 * 105.46989 * 58.90405 * 4 2 1 6 6 C 1.52421 * 115.87224 * 61.80123 * 5 4 2 7 7 C 1.52150 * 105.50242 * 261.37202 * 6 5 4 8 8 N 1.48458 * 108.14250 * 107.82841 * 7 6 5 9 9 C 1.39148 * 110.99934 * 88.17086 * 8 7 6 10 10 C 1.39298 * 119.72092 * 55.76744 * 9 8 7 11 11 F 1.35107 * 120.46768 * 0.02562 * 10 9 8 12 12 C 1.38480 * 119.06371 * 179.75237 * 10 9 8 13 13 C 1.38864 * 118.48046 * 0.51676 * 12 10 9 14 14 C 1.50701 * 120.32678 * 179.77365 * 13 12 10 15 15 O 1.42907 * 109.46876 * 299.97535 * 14 13 12 16 16 Si 1.86304 * 109.47139 * 179.97438 * 14 13 12 17 17 H 1.48499 * 109.47214 * 59.99900 * 16 14 13 18 18 H 1.48499 * 109.46997 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.47267 * 299.99712 * 16 14 13 20 20 C 1.38026 * 119.34942 * 359.74856 * 13 12 10 21 21 N 1.31988 * 120.89467 * 359.97438 * 20 13 12 22 22 C 1.47432 * 116.21706 * 320.08091 * 8 7 6 23 23 H 1.09003 * 109.46853 * 299.01299 * 1 2 3 24 24 H 1.08998 * 109.46768 * 59.00718 * 1 2 3 25 25 H 1.08998 * 109.47499 * 179.01503 * 1 2 3 26 26 H 1.09002 * 109.47060 * 180.98948 * 3 2 1 27 27 H 1.09000 * 109.46842 * 300.98645 * 3 2 1 28 28 H 1.08997 * 109.46870 * 60.99103 * 3 2 1 29 29 H 1.09002 * 110.26289 * 299.87795 * 4 2 1 30 30 H 1.08996 * 110.26271 * 177.93286 * 4 2 1 31 31 H 1.08999 * 108.20164 * 183.46330 * 5 4 2 32 32 H 1.08998 * 108.20125 * 300.34541 * 5 4 2 33 33 H 1.09006 * 110.23390 * 20.37214 * 6 5 4 34 34 H 1.09005 * 110.23385 * 142.23698 * 6 5 4 35 35 H 1.08992 * 109.72684 * 227.48910 * 7 6 5 36 36 H 1.08998 * 109.72914 * 348.17283 * 7 6 5 37 37 H 1.07998 * 120.76272 * 180.26579 * 12 10 9 38 38 H 1.08994 * 109.47537 * 59.97337 * 14 13 12 39 39 H 0.96696 * 113.99887 * 299.99603 * 15 14 13 40 40 H 1.07991 * 119.55571 * 180.02562 * 20 13 12 41 41 H 1.09002 * 108.52587 * 77.94689 * 22 8 7 42 42 H 1.08999 * 108.52387 * 195.47552 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4973 1.7517 0.0000 4 6 2.5075 -0.9189 1.5299 5 6 1.9517 -2.2787 1.4343 6 6 2.3779 -3.0872 0.2145 7 6 1.2341 -2.9562 -0.7802 8 7 1.6814 -2.0712 -1.8850 9 6 2.3134 -2.8031 -2.8855 10 6 1.6475 -3.8684 -3.4872 11 9 0.3930 -4.1951 -3.1066 12 6 2.2874 -4.5844 -4.4851 13 6 3.5784 -4.2164 -4.8402 14 6 4.3155 -4.9700 -5.9172 15 8 4.4450 -6.3411 -5.5355 16 14 6.0083 -4.2270 -6.1476 17 1 6.7660 -4.3167 -4.8736 18 1 6.7348 -4.9700 -7.2084 19 1 5.8737 -2.8023 -6.5442 20 6 4.1798 -3.1532 -4.1975 21 7 3.5444 -2.4846 -3.2535 22 6 2.4894 -0.9011 -1.4958 23 1 -0.3633 0.4984 0.8987 24 1 -0.3633 0.5292 -0.8810 25 1 -0.3634 -1.0275 -0.0177 26 1 3.5872 1.7435 -0.0177 27 1 2.1236 2.2735 -0.8810 28 1 2.1525 2.2630 0.8987 29 1 2.1567 -0.4307 2.4391 30 1 3.5968 -0.9546 1.5177 31 1 2.2451 -2.8300 2.3277 32 1 0.8644 -2.2023 1.4256 33 1 3.2946 -2.6763 -0.2087 34 1 2.5250 -4.1322 0.4875 35 1 0.9769 -3.9383 -1.1766 36 1 0.3659 -2.5188 -0.2871 37 1 1.7952 -5.4126 -4.9731 38 1 3.7595 -4.9042 -6.8523 39 1 4.9304 -6.4754 -4.7101 40 1 5.1836 -2.8638 -4.4714 41 1 3.5078 -1.2344 -1.2959 42 1 2.5150 -0.2038 -2.3332 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_16945878_17656566.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:00:19 Heat of formation + Delta-G solvation = -53.864725 kcal Electronic energy + Delta-G solvation = -23259.592187 eV Core-core repulsion = 19892.423350 eV Total energy + Delta-G solvation = -3367.168837 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 298.138 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.91332 -41.68451 -39.40436 -37.78508 -35.57264 -33.31824 -31.80049 -30.16385 -29.17843 -28.48604 -27.71813 -26.36746 -24.47881 -23.77082 -22.46984 -21.57655 -19.05135 -18.55981 -18.19214 -17.59009 -17.21176 -16.61601 -16.23641 -15.97552 -15.82615 -15.67119 -15.36128 -14.80487 -14.66677 -14.35424 -14.16288 -14.00930 -13.88323 -13.77965 -13.67410 -13.36738 -13.32942 -13.24494 -12.75772 -12.72900 -12.39432 -12.25915 -12.07904 -11.84499 -11.63130 -11.11671 -11.01157 -10.80913 -10.71034 -10.52931 -10.43618 -10.23210 -8.94475 -0.19667 0.02281 1.01964 1.33856 1.40541 1.55275 1.71248 1.77371 1.81863 2.29944 2.45882 2.59862 3.09695 3.28745 3.34365 3.50546 3.69474 3.77106 3.84193 3.94688 4.03276 4.34380 4.38635 4.45493 4.49938 4.58050 4.64120 4.67849 4.68628 4.70350 4.76006 4.78051 4.89627 4.92191 4.98622 5.09157 5.13668 5.29663 5.34478 5.39930 5.45654 5.61261 5.73016 5.99587 6.41389 6.78461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.442 4.442 2 Si 1.003 2.997 3 C -0.444 4.444 4 C -0.396 4.396 5 C -0.115 4.115 6 C -0.162 4.162 7 C 0.043 3.957 8 N -0.471 5.471 9 C 0.303 3.697 10 C 0.028 3.972 11 F -0.123 7.123 12 C -0.057 4.057 13 C -0.182 4.182 14 C -0.071 4.071 15 O -0.537 6.537 16 Si 0.943 3.057 17 H -0.248 1.248 18 H -0.248 1.248 19 H -0.246 1.246 20 C 0.115 3.885 21 N -0.490 5.490 22 C -0.223 4.223 23 H 0.067 0.933 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.089 0.911 36 H 0.105 0.895 37 H 0.153 0.847 38 H 0.122 0.878 39 H 0.377 0.623 40 H 0.156 0.844 41 H 0.071 0.929 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.295 0.364 1.409 1.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.550 4.550 2 Si 1.198 2.802 3 C -0.552 4.552 4 C -0.481 4.481 5 C -0.153 4.153 6 C -0.201 4.201 7 C -0.081 4.081 8 N -0.187 5.187 9 C 0.068 3.932 10 C 0.003 3.997 11 F -0.101 7.101 12 C -0.084 4.084 13 C -0.186 4.186 14 C -0.183 4.183 15 O -0.342 6.342 16 Si 0.765 3.235 17 H -0.171 1.171 18 H -0.171 1.171 19 H -0.170 1.170 20 C -0.042 4.042 21 N -0.203 5.203 22 C -0.395 4.395 23 H 0.086 0.914 24 H 0.091 0.909 25 H 0.092 0.908 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.092 0.908 29 H 0.100 0.900 30 H 0.094 0.906 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.100 0.900 34 H 0.094 0.906 35 H 0.107 0.893 36 H 0.122 0.878 37 H 0.171 0.829 38 H 0.140 0.860 39 H 0.224 0.776 40 H 0.173 0.827 41 H 0.089 0.911 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.714 1.530 1.059 2.530 hybrid contribution -0.182 -1.069 0.246 1.112 sum 1.532 0.461 1.305 2.064 Atomic orbital electron populations 1.26182 1.19589 1.04801 1.04423 0.79696 0.68038 0.66975 0.65531 1.26012 1.06485 1.17971 1.04783 1.25181 1.05199 1.03495 1.14274 1.20164 1.01001 0.95964 0.98143 1.22163 0.99427 1.01523 0.96970 1.23244 0.98202 0.97052 0.89560 1.58053 1.40339 1.08460 1.11807 1.20139 0.88181 0.89581 0.95262 1.18129 0.82280 0.99013 1.00258 1.91496 1.36886 1.91906 1.89861 1.21383 0.94029 0.98673 0.94280 1.21067 0.95917 0.99675 1.01942 1.24864 1.09507 0.85859 0.98031 1.86534 1.79417 1.22415 1.45807 0.85769 0.75538 0.80180 0.82010 1.17124 1.17131 1.16992 1.22477 0.99304 0.91251 0.91189 1.67696 1.06531 1.30364 1.15747 1.27046 1.01324 0.95718 1.15433 0.91365 0.90893 0.90792 0.91013 0.91024 0.90768 0.90033 0.90574 0.92500 0.91752 0.89983 0.90562 0.89274 0.87753 0.82913 0.86000 0.77561 0.82725 0.91057 0.89533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.44 0.51 8.49 101.05 0.86 1.37 16 2 Si 1.00 -2.13 10.61 -169.99 -1.80 -3.94 16 3 C -0.44 0.67 8.65 101.05 0.87 1.54 16 4 C -0.40 0.67 5.03 34.38 0.17 0.85 16 5 C -0.12 0.15 4.90 -29.81 -0.15 0.00 16 6 C -0.16 0.10 5.66 -27.46 -0.16 -0.06 16 7 C 0.04 0.00 5.04 -3.40 -0.02 -0.02 16 8 N -0.47 -0.67 4.40 -110.51 -0.49 -1.15 16 9 C 0.30 0.77 6.27 -154.84 -0.97 -0.20 16 10 C 0.03 0.06 6.76 -39.10 -0.26 -0.20 16 11 F -0.12 -0.34 15.04 2.25 0.03 -0.31 16 12 C -0.06 -0.04 9.75 -39.26 -0.38 -0.43 16 13 C -0.18 0.00 5.40 -104.47 -0.56 -0.57 16 14 C -0.07 0.10 2.84 36.01 0.10 0.20 16 15 O -0.54 0.40 12.78 -35.23 -0.45 -0.05 16 16 Si 0.94 -1.48 25.10 -169.99 -4.27 -5.74 16 17 H -0.25 0.35 7.11 56.52 0.40 0.76 16 18 H -0.25 0.03 7.11 56.52 0.40 0.43 16 19 H -0.25 0.24 7.11 56.52 0.40 0.64 16 20 C 0.12 0.10 9.84 -17.56 -0.17 -0.07 16 21 N -0.49 -1.26 8.54 -12.37 -0.11 -1.36 16 22 C -0.22 -0.06 3.15 60.36 0.19 0.13 16 23 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 24 H 0.07 -0.04 7.96 -51.93 -0.41 -0.45 16 25 H 0.07 -0.07 5.19 -51.93 -0.27 -0.34 16 26 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 27 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 28 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 29 H 0.08 -0.17 8.02 -51.93 -0.42 -0.58 16 30 H 0.08 -0.11 8.02 -51.93 -0.42 -0.53 16 31 H 0.06 -0.05 8.14 -51.93 -0.42 -0.47 16 32 H 0.06 -0.12 5.80 -51.93 -0.30 -0.42 16 33 H 0.08 0.02 5.65 -51.93 -0.29 -0.27 16 34 H 0.08 -0.06 8.14 -51.93 -0.42 -0.48 16 35 H 0.09 0.05 5.53 -51.93 -0.29 -0.24 16 36 H 0.10 -0.11 3.95 -51.93 -0.21 -0.32 16 37 H 0.15 -0.07 8.06 -52.49 -0.42 -0.49 16 38 H 0.12 -0.28 7.96 -51.93 -0.41 -0.69 16 39 H 0.38 -1.45 8.70 45.56 0.40 -1.05 16 40 H 0.16 -0.13 4.88 -52.49 -0.26 -0.39 16 41 H 0.07 0.05 5.77 -51.93 -0.30 -0.25 16 42 H 0.09 0.08 7.92 -51.93 -0.41 -0.33 16 LS Contribution 321.09 15.07 4.84 4.84 Total: 0.00 -4.72 321.09 -8.02 -12.74 By element: Atomic # 1 Polarization: -2.27 SS G_CDS: -5.30 Total: -7.57 kcal Atomic # 6 Polarization: 3.02 SS G_CDS: -0.48 Total: 2.55 kcal Atomic # 7 Polarization: -1.93 SS G_CDS: -0.59 Total: -2.52 kcal Atomic # 8 Polarization: 0.40 SS G_CDS: -0.45 Total: -0.05 kcal Atomic # 9 Polarization: -0.34 SS G_CDS: 0.03 Total: -0.31 kcal Atomic # 14 Polarization: -3.61 SS G_CDS: -6.07 Total: -9.68 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -4.72 -8.02 -12.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16945878_17656566.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.122 kcal (2) G-P(sol) polarization free energy of solvation -4.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds