Wall clock time and date at job start Mon Mar 8 2021 07:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86297 * 1 3 3 C 1.86305 * 109.90738 * 2 1 4 4 C 1.89743 * 109.85837 * 120.98967 * 2 1 3 5 5 C 1.47215 * 105.46989 * 58.90405 * 4 2 1 6 6 C 1.52421 * 115.87224 * 61.80123 * 5 4 2 7 7 C 1.52150 * 105.50242 * 261.37202 * 6 5 4 8 8 N 1.48458 * 108.14250 * 107.82841 * 7 6 5 9 9 C 1.39148 * 110.99934 * 88.17086 * 8 7 6 10 10 C 1.39298 * 119.72092 * 55.76744 * 9 8 7 11 11 F 1.35107 * 120.46768 * 0.02562 * 10 9 8 12 12 C 1.38480 * 119.06371 * 179.75237 * 10 9 8 13 13 C 1.38864 * 118.48046 * 0.51676 * 12 10 9 14 14 C 1.50701 * 120.32678 * 179.77365 * 13 12 10 15 15 O 1.42907 * 109.46876 * 299.97535 * 14 13 12 16 16 Si 1.86304 * 109.47139 * 179.97438 * 14 13 12 17 17 H 1.48499 * 109.47214 * 59.99900 * 16 14 13 18 18 H 1.48499 * 109.46997 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.47267 * 299.99712 * 16 14 13 20 20 C 1.38026 * 119.34942 * 359.74856 * 13 12 10 21 21 N 1.31988 * 120.89467 * 359.97438 * 20 13 12 22 22 C 1.47432 * 116.21706 * 320.08091 * 8 7 6 23 23 H 1.09003 * 109.46853 * 299.01299 * 1 2 3 24 24 H 1.08998 * 109.46768 * 59.00718 * 1 2 3 25 25 H 1.08998 * 109.47499 * 179.01503 * 1 2 3 26 26 H 1.09002 * 109.47060 * 180.98948 * 3 2 1 27 27 H 1.09000 * 109.46842 * 300.98645 * 3 2 1 28 28 H 1.08997 * 109.46870 * 60.99103 * 3 2 1 29 29 H 1.09002 * 110.26289 * 299.87795 * 4 2 1 30 30 H 1.08996 * 110.26271 * 177.93286 * 4 2 1 31 31 H 1.08999 * 108.20164 * 183.46330 * 5 4 2 32 32 H 1.08998 * 108.20125 * 300.34541 * 5 4 2 33 33 H 1.09006 * 110.23390 * 20.37214 * 6 5 4 34 34 H 1.09005 * 110.23385 * 142.23698 * 6 5 4 35 35 H 1.08992 * 109.72684 * 227.48910 * 7 6 5 36 36 H 1.08998 * 109.72914 * 348.17283 * 7 6 5 37 37 H 1.07998 * 120.76272 * 180.26579 * 12 10 9 38 38 H 1.08994 * 109.47537 * 59.97337 * 14 13 12 39 39 H 0.96696 * 113.99887 * 299.99603 * 15 14 13 40 40 H 1.07991 * 119.55571 * 180.02562 * 20 13 12 41 41 H 1.09002 * 108.52587 * 77.94689 * 22 8 7 42 42 H 1.08999 * 108.52387 * 195.47552 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4973 1.7517 0.0000 4 6 2.5075 -0.9189 1.5299 5 6 1.9517 -2.2787 1.4343 6 6 2.3779 -3.0872 0.2145 7 6 1.2341 -2.9562 -0.7802 8 7 1.6814 -2.0712 -1.8850 9 6 2.3134 -2.8031 -2.8855 10 6 1.6475 -3.8684 -3.4872 11 9 0.3930 -4.1951 -3.1066 12 6 2.2874 -4.5844 -4.4851 13 6 3.5784 -4.2164 -4.8402 14 6 4.3155 -4.9700 -5.9172 15 8 4.4450 -6.3411 -5.5355 16 14 6.0083 -4.2270 -6.1476 17 1 6.7660 -4.3167 -4.8736 18 1 6.7348 -4.9700 -7.2084 19 1 5.8737 -2.8023 -6.5442 20 6 4.1798 -3.1532 -4.1975 21 7 3.5444 -2.4846 -3.2535 22 6 2.4894 -0.9011 -1.4958 23 1 -0.3633 0.4984 0.8987 24 1 -0.3633 0.5292 -0.8810 25 1 -0.3634 -1.0275 -0.0177 26 1 3.5872 1.7435 -0.0177 27 1 2.1236 2.2735 -0.8810 28 1 2.1525 2.2630 0.8987 29 1 2.1567 -0.4307 2.4391 30 1 3.5968 -0.9546 1.5177 31 1 2.2451 -2.8300 2.3277 32 1 0.8644 -2.2023 1.4256 33 1 3.2946 -2.6763 -0.2087 34 1 2.5250 -4.1322 0.4875 35 1 0.9769 -3.9383 -1.1766 36 1 0.3659 -2.5188 -0.2871 37 1 1.7952 -5.4126 -4.9731 38 1 3.7595 -4.9042 -6.8523 39 1 4.9304 -6.4754 -4.7101 40 1 5.1836 -2.8638 -4.4714 41 1 3.5078 -1.2344 -1.2959 42 1 2.5150 -0.2038 -2.3332 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_16945878_17656566.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:00:19 Heat of formation + Delta-G solvation = -46.510964 kcal Electronic energy + Delta-G solvation = -23259.273304 eV Core-core repulsion = 19892.423350 eV Total energy + Delta-G solvation = -3366.849954 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 298.138 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.06712 -41.74858 -39.39646 -37.72746 -35.53020 -33.38149 -31.83502 -30.11413 -29.07351 -28.37041 -27.71710 -26.34819 -24.52402 -23.77225 -22.46828 -21.53292 -19.08004 -18.62598 -18.25372 -17.59390 -17.30000 -16.61267 -16.16669 -16.00241 -15.80269 -15.67775 -15.32345 -14.80453 -14.64043 -14.34864 -14.13110 -13.99563 -13.81985 -13.76098 -13.58418 -13.34035 -13.27670 -13.15091 -12.70199 -12.66975 -12.32916 -12.16451 -12.05198 -11.74387 -11.58236 -11.13250 -10.94125 -10.79140 -10.74485 -10.52749 -10.44474 -10.11709 -9.00990 -0.27760 -0.05484 1.12578 1.45104 1.50279 1.65925 1.85903 1.88588 1.90564 2.27654 2.49366 2.60898 3.02923 3.24645 3.39933 3.58377 3.71799 3.75816 3.86586 3.93703 4.07018 4.32839 4.43068 4.49809 4.52847 4.61015 4.68162 4.71598 4.80186 4.81312 4.82572 4.87162 4.88887 4.95796 5.04064 5.16589 5.19221 5.30303 5.39258 5.53262 5.58517 5.70657 5.72992 5.91707 6.64849 6.70717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.453 4.453 2 Si 1.063 2.937 3 C -0.454 4.454 4 C -0.400 4.400 5 C -0.117 4.117 6 C -0.158 4.158 7 C 0.042 3.958 8 N -0.478 5.478 9 C 0.289 3.711 10 C 0.011 3.989 11 F -0.130 7.130 12 C -0.056 4.056 13 C -0.175 4.175 14 C -0.067 4.067 15 O -0.549 6.549 16 Si 0.974 3.026 17 H -0.248 1.248 18 H -0.267 1.267 19 H -0.254 1.254 20 C 0.108 3.892 21 N -0.508 5.508 22 C -0.235 4.235 23 H 0.075 0.925 24 H 0.065 0.935 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.079 0.921 29 H 0.090 0.910 30 H 0.074 0.926 31 H 0.055 0.945 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.115 0.885 37 H 0.165 0.835 38 H 0.132 0.868 39 H 0.390 0.610 40 H 0.170 0.830 41 H 0.064 0.936 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.377 0.376 1.799 2.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.560 4.560 2 Si 1.254 2.746 3 C -0.562 4.562 4 C -0.486 4.486 5 C -0.154 4.154 6 C -0.197 4.197 7 C -0.081 4.081 8 N -0.194 5.194 9 C 0.055 3.945 10 C -0.014 4.014 11 F -0.108 7.108 12 C -0.082 4.082 13 C -0.179 4.179 14 C -0.178 4.178 15 O -0.356 6.356 16 Si 0.798 3.202 17 H -0.172 1.172 18 H -0.192 1.192 19 H -0.178 1.178 20 C -0.049 4.049 21 N -0.221 5.221 22 C -0.404 4.404 23 H 0.094 0.906 24 H 0.084 0.916 25 H 0.091 0.909 26 H 0.090 0.910 27 H 0.087 0.913 28 H 0.098 0.902 29 H 0.109 0.891 30 H 0.093 0.907 31 H 0.074 0.926 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.100 0.900 36 H 0.133 0.867 37 H 0.182 0.818 38 H 0.150 0.850 39 H 0.239 0.761 40 H 0.186 0.814 41 H 0.082 0.918 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.797 1.532 1.447 2.770 hybrid contribution -0.175 -1.095 0.074 1.111 sum 1.622 0.438 1.521 2.266 Atomic orbital electron populations 1.26313 1.20548 1.04709 1.04456 0.78809 0.66611 0.65626 0.63597 1.26128 1.06624 1.18564 1.04925 1.25241 1.05194 1.03297 1.14856 1.20183 1.01583 0.96093 0.97541 1.22114 0.98749 1.01726 0.97093 1.23315 0.98777 0.96673 0.89369 1.58112 1.40396 1.08806 1.12077 1.20337 0.88398 0.89965 0.95784 1.18298 0.82294 0.99658 1.01114 1.91470 1.37311 1.92007 1.90060 1.21570 0.94259 0.98655 0.93758 1.21193 0.95592 0.99255 1.01832 1.24910 1.09556 0.85508 0.97819 1.86507 1.79768 1.22543 1.46792 0.85322 0.74781 0.79078 0.81034 1.17172 1.19207 1.17805 1.22798 0.99882 0.91363 0.90883 1.67712 1.06797 1.31072 1.16559 1.27383 1.01264 0.95373 1.16415 0.90636 0.91580 0.90917 0.90980 0.91327 0.90200 0.89128 0.90704 0.92619 0.90897 0.90923 0.90458 0.89975 0.86695 0.81764 0.84996 0.76103 0.81364 0.91804 0.90711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 1.11 8.49 113.37 0.96 2.08 16 2 Si 1.06 -4.46 10.61 68.60 0.73 -3.73 16 3 C -0.45 1.42 8.65 113.37 0.98 2.40 16 4 C -0.40 1.56 5.03 70.18 0.35 1.91 16 5 C -0.12 0.32 4.90 28.60 0.14 0.46 16 6 C -0.16 0.10 5.66 30.12 0.17 0.27 16 7 C 0.04 0.04 5.04 85.72 0.43 0.47 16 8 N -0.48 -1.90 4.40 -503.56 -2.21 -4.12 16 9 C 0.29 1.83 6.27 133.06 0.83 2.67 16 10 C 0.01 0.06 6.76 22.58 0.15 0.21 16 11 F -0.13 -0.87 15.04 44.97 0.68 -0.19 16 12 C -0.06 -0.11 9.75 22.48 0.22 0.11 16 13 C -0.17 -0.02 5.40 -19.76 -0.11 -0.12 16 14 C -0.07 0.22 2.84 71.24 0.20 0.42 16 15 O -0.55 1.13 12.78 -148.98 -1.90 -0.78 16 16 Si 0.97 -3.26 25.10 68.60 1.72 -1.54 16 17 H -0.25 0.83 7.11 99.48 0.71 1.54 16 18 H -0.27 0.00 7.11 99.48 0.71 0.71 16 19 H -0.25 0.53 7.11 99.48 0.71 1.24 16 20 C 0.11 0.24 9.84 84.62 0.83 1.07 16 21 N -0.51 -3.16 8.54 -193.03 -1.65 -4.81 16 22 C -0.24 -0.37 3.15 127.59 0.40 0.03 16 23 H 0.07 -0.28 7.96 -2.39 -0.02 -0.30 16 24 H 0.06 -0.05 7.96 -2.39 -0.02 -0.07 16 25 H 0.07 -0.16 5.19 -2.39 -0.01 -0.17 16 26 H 0.07 -0.22 7.96 -2.39 -0.02 -0.24 16 27 H 0.07 -0.16 7.96 -2.39 -0.02 -0.18 16 28 H 0.08 -0.32 7.96 -2.39 -0.02 -0.34 16 29 H 0.09 -0.48 8.02 -2.39 -0.02 -0.50 16 30 H 0.07 -0.24 8.02 -2.39 -0.02 -0.26 16 31 H 0.06 -0.12 8.14 -2.39 -0.02 -0.14 16 32 H 0.07 -0.32 5.80 -2.39 -0.01 -0.34 16 33 H 0.07 0.11 5.65 -2.38 -0.01 0.10 16 34 H 0.08 -0.08 8.14 -2.38 -0.02 -0.10 16 35 H 0.08 0.18 5.53 -2.39 -0.01 0.17 16 36 H 0.12 -0.21 3.95 -2.39 -0.01 -0.22 16 37 H 0.16 -0.16 8.06 -2.91 -0.02 -0.18 16 38 H 0.13 -0.70 7.96 -2.39 -0.02 -0.71 16 39 H 0.39 -3.18 8.70 -74.06 -0.64 -3.83 16 40 H 0.17 -0.27 4.88 -2.92 -0.01 -0.28 16 41 H 0.06 0.18 5.77 -2.39 -0.01 0.17 16 42 H 0.07 0.26 7.92 -2.39 -0.02 0.24 16 Total: 0.00 -10.99 321.09 4.09 -6.90 By element: Atomic # 1 Polarization: -4.87 SS G_CDS: 1.15 Total: -3.71 kcal Atomic # 6 Polarization: 6.40 SS G_CDS: 5.57 Total: 11.97 kcal Atomic # 7 Polarization: -5.06 SS G_CDS: -3.86 Total: -8.92 kcal Atomic # 8 Polarization: 1.13 SS G_CDS: -1.90 Total: -0.78 kcal Atomic # 9 Polarization: -0.87 SS G_CDS: 0.68 Total: -0.19 kcal Atomic # 14 Polarization: -7.72 SS G_CDS: 2.45 Total: -5.27 kcal Total: -10.99 4.09 -6.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16945878_17656566.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.610 kcal (2) G-P(sol) polarization free energy of solvation -10.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -6.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds