Wall clock time and date at job start Mon Mar 8 2021 07:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86305 * 109.46645 * 2 1 4 4 C 1.50699 * 109.47152 * 119.99802 * 2 1 3 5 5 C 1.38603 * 120.71626 * 244.72674 * 4 2 1 6 6 N 1.32279 * 119.19448 * 179.72267 * 5 4 2 7 7 C 1.32494 * 120.73816 * 0.55982 * 6 5 4 8 8 N 1.38410 * 119.21743 * 179.73464 * 7 6 5 9 9 C 1.46500 * 119.99832 * 359.97438 * 8 7 6 10 10 C 1.52997 * 109.46915 * 180.02562 * 9 8 7 11 11 H 1.09000 * 112.85267 * 316.19155 * 10 9 8 12 12 C 1.53778 * 113.61849 * 87.49980 * 10 9 8 13 13 C 1.53781 * 87.08219 * 139.97808 * 12 10 9 14 14 H 1.08996 * 113.69783 * 220.00645 * 13 12 10 15 15 N 1.46509 * 113.61115 * 89.11835 * 13 12 10 16 16 C 1.34949 * 126.03740 * 347.21693 * 15 13 12 17 17 C 1.35316 * 107.74370 * 179.84103 * 16 15 13 18 18 C 1.39865 * 107.92146 * 0.42606 * 17 16 15 19 19 N 1.30843 * 108.20370 * 359.73562 * 18 17 16 20 20 C 1.53783 * 87.08298 * 334.57156 * 13 12 10 21 21 N 1.32499 * 121.56689 * 359.70897 * 7 6 5 22 22 C 1.32272 * 120.73472 * 0.02562 * 21 7 6 23 23 H 0.96700 * 114.00311 * 60.00382 * 1 2 3 24 24 H 1.08997 * 109.47332 * 240.00042 * 2 1 3 25 25 H 1.48499 * 109.99670 * 298.67876 * 3 2 1 26 26 H 1.48497 * 110.00233 * 59.99845 * 3 2 1 27 27 H 1.08000 * 120.40916 * 359.97438 * 5 4 2 28 28 H 0.96997 * 119.99765 * 179.97438 * 8 7 6 29 29 H 1.09000 * 109.46962 * 299.99913 * 9 8 7 30 30 H 1.09000 * 109.47180 * 60.00081 * 9 8 7 31 31 H 1.08992 * 113.61849 * 254.52702 * 12 10 9 32 32 H 1.09000 * 113.61376 * 25.43589 * 12 10 9 33 33 H 1.07999 * 126.12216 * 0.02562 * 16 15 13 34 34 H 1.07994 * 126.03809 * 180.16163 * 17 16 15 35 35 H 1.08002 * 125.90033 * 179.72201 * 18 17 16 36 36 H 1.09001 * 113.60696 * 270.88176 * 20 13 12 37 37 H 1.08995 * 113.69128 * 139.99225 * 20 13 12 38 38 H 1.08005 * 120.39585 * 179.97438 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7566 0.0000 4 6 1.9314 -0.7104 1.2305 5 6 2.6470 -0.0261 2.2004 6 7 3.0689 -0.6782 3.2712 7 6 2.8238 -1.9722 3.4163 8 7 3.2847 -2.6245 4.5467 9 6 4.0343 -1.8845 5.5649 10 6 4.4244 -2.8327 6.7005 11 1 3.6101 -3.4927 6.9994 12 6 5.7564 -3.5634 6.4630 13 6 6.0538 -3.3418 7.9554 14 1 7.0911 -3.0776 8.1609 15 7 5.5593 -4.4176 8.8183 16 6 4.6995 -5.3931 8.4574 17 6 4.4989 -6.1858 9.5356 18 6 5.2545 -5.6716 10.5943 19 7 5.8906 -4.6116 10.1655 20 6 5.1118 -2.1285 7.8823 21 7 2.1474 -2.6565 2.5053 22 6 1.6931 -2.0633 1.4139 23 1 -0.3934 0.4416 -0.7651 24 1 1.7924 -0.5138 -0.8899 25 1 1.5877 2.4585 -1.2243 26 1 1.5613 2.4680 1.2084 27 1 2.8542 1.0276 2.0854 28 1 3.1113 -3.5715 4.6647 29 1 4.9350 -1.4632 5.1183 30 1 3.4140 -1.0799 5.9597 31 1 5.6368 -4.6125 6.1927 32 1 6.4353 -3.0288 5.7985 33 1 4.2540 -5.5203 7.4818 34 1 3.8639 -7.0585 9.5733 35 1 5.3042 -6.0789 11.5933 36 1 5.6144 -1.2017 7.6058 37 1 4.4713 -2.0180 8.7573 38 1 1.1428 -2.6265 0.6746 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_16945880_12175864.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:00:27 Heat of formation + Delta-G solvation = 147.757268 kcal Electronic energy + Delta-G solvation = -21709.720376 eV Core-core repulsion = 18364.461449 eV Total energy + Delta-G solvation = -3345.258928 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 288.133 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.42759 -42.04902 -40.00275 -38.13188 -36.65129 -34.74456 -33.16598 -32.03825 -31.02331 -28.86239 -26.90235 -26.28603 -25.90059 -24.30828 -22.93257 -22.29623 -21.67826 -20.41292 -19.34467 -18.74276 -18.42049 -17.88989 -16.82640 -16.57637 -16.48334 -16.03420 -15.82349 -15.57844 -15.36377 -15.28353 -14.84228 -14.56020 -14.44672 -13.96913 -13.85671 -13.64784 -13.31267 -13.26403 -13.02989 -12.29816 -12.08531 -11.90105 -11.84310 -11.77083 -11.64045 -11.46366 -11.19815 -10.64920 -10.38521 -10.03535 -9.53456 -9.09556 -4.91444 0.04471 0.13582 0.92810 1.31444 1.52525 1.61114 1.81611 1.91188 1.96938 2.75577 3.13169 3.17853 3.32809 3.42160 3.55582 3.65611 3.66563 3.81732 3.90790 3.91361 4.03729 4.17113 4.19923 4.37598 4.48086 4.57859 4.65787 4.70888 4.72056 4.76765 4.77586 4.86399 4.90750 4.99212 5.11283 5.18006 5.26953 5.72593 5.74644 6.02673 6.15687 6.38775 6.63924 6.74742 7.26404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.560 6.560 2 C -0.059 4.059 3 Si 0.755 3.245 4 C -0.249 4.249 5 C 0.192 3.808 6 N -0.577 5.577 7 C 0.550 3.450 8 N -0.690 5.690 9 C 0.154 3.846 10 C -0.116 4.116 11 H 0.099 0.901 12 C -0.123 4.123 13 C 0.120 3.880 14 H 0.110 0.890 15 N -0.360 5.360 16 C 0.054 3.946 17 C -0.290 4.290 18 C 0.032 3.968 19 N -0.340 5.340 20 C -0.130 4.130 21 N -0.589 5.589 22 C 0.213 3.787 23 H 0.397 0.603 24 H 0.104 0.896 25 H -0.282 1.282 26 H -0.297 1.297 27 H 0.183 0.817 28 H 0.419 0.581 29 H 0.078 0.922 30 H 0.060 0.940 31 H 0.087 0.913 32 H 0.124 0.876 33 H 0.199 0.801 34 H 0.163 0.837 35 H 0.200 0.800 36 H 0.122 0.878 37 H 0.062 0.938 38 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.718 0.424 -5.180 5.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.370 6.370 2 C -0.170 4.170 3 Si 0.660 3.340 4 C -0.257 4.257 5 C 0.025 3.975 6 N -0.301 5.301 7 C 0.193 3.807 8 N -0.327 5.327 9 C 0.031 3.969 10 C -0.134 4.134 11 H 0.117 0.883 12 C -0.161 4.161 13 C 0.018 3.982 14 H 0.128 0.872 15 N -0.142 5.142 16 C -0.092 4.092 17 C -0.319 4.319 18 C -0.153 4.153 19 N -0.162 5.162 20 C -0.168 4.168 21 N -0.311 5.311 22 C 0.045 3.955 23 H 0.248 0.752 24 H 0.121 0.879 25 H -0.209 1.209 26 H -0.225 1.225 27 H 0.199 0.801 28 H 0.257 0.743 29 H 0.097 0.903 30 H 0.078 0.922 31 H 0.105 0.895 32 H 0.143 0.857 33 H 0.216 0.784 34 H 0.181 0.819 35 H 0.216 0.784 36 H 0.140 0.860 37 H 0.081 0.919 38 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 2.934 1.606 -3.401 4.770 hybrid contribution -2.299 -0.719 -1.078 2.639 sum 0.635 0.887 -4.479 4.610 Atomic orbital electron populations 1.86545 1.18596 1.80629 1.51277 1.24579 0.83880 1.11156 0.97336 0.94369 0.90234 0.72491 0.76897 1.20807 1.07462 0.96760 1.00659 1.23128 0.88336 1.00038 0.86030 1.67967 1.28220 1.08410 1.25457 1.19669 0.87600 0.85843 0.87615 1.44185 1.58492 1.12375 1.17619 1.21300 0.95802 0.93585 0.86235 1.22826 0.97680 0.98050 0.94883 0.88330 1.23493 0.97077 1.02967 0.92550 1.22301 0.99328 0.86320 0.90280 0.87166 1.48614 1.35146 1.22531 1.07942 1.22990 0.94463 0.90106 1.01671 1.21881 1.10303 1.06496 0.93213 1.24374 0.95847 0.93496 1.01551 1.77331 1.25518 1.21147 0.92156 1.23362 0.97804 0.97920 0.97758 1.67999 1.17371 1.40675 1.05084 1.23164 0.88980 0.91691 0.91661 0.75222 0.87868 1.20905 1.22461 0.80055 0.74257 0.90342 0.92197 0.89458 0.85744 0.78387 0.81902 0.78378 0.85954 0.91950 0.79834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.32 12.82 -148.98 -1.91 -1.59 16 2 C -0.06 0.21 2.82 71.24 0.20 0.41 16 3 Si 0.75 -3.40 29.91 68.60 2.05 -1.34 16 4 C -0.25 -0.27 5.40 -19.69 -0.11 -0.37 16 5 C 0.19 0.39 9.92 84.71 0.84 1.23 16 6 N -0.58 -2.99 9.59 -197.98 -1.90 -4.88 16 7 C 0.55 2.81 8.43 261.48 2.20 5.01 16 8 N -0.69 0.38 5.70 -351.04 -2.00 -1.62 16 9 C 0.15 -0.59 5.49 86.38 0.47 -0.12 16 10 C -0.12 0.76 3.33 -10.27 -0.03 0.72 16 11 H 0.10 -0.58 6.96 -2.39 -0.02 -0.60 16 12 C -0.12 0.95 6.88 31.12 0.21 1.16 16 13 C 0.12 -0.29 5.18 45.52 0.24 -0.05 16 14 H 0.11 -0.23 8.14 -2.39 -0.02 -0.25 16 15 N -0.36 -1.21 3.79 -324.97 -1.23 -2.44 16 16 C 0.05 0.02 9.62 83.54 0.80 0.82 16 17 C -0.29 -0.65 10.80 21.99 0.24 -0.41 16 18 C 0.03 0.17 12.03 85.23 1.02 1.19 16 19 N -0.34 -3.09 12.58 -57.02 -0.72 -3.81 16 20 C -0.13 0.57 7.44 31.12 0.23 0.80 16 21 N -0.59 -3.49 10.46 -197.98 -2.07 -5.56 16 22 C 0.21 0.59 10.99 84.71 0.93 1.52 16 23 H 0.40 -3.39 8.74 -74.06 -0.65 -4.04 16 24 H 0.10 -0.86 7.96 -2.39 -0.02 -0.88 16 25 H -0.28 0.08 7.11 99.48 0.71 0.78 16 26 H -0.30 -0.86 7.07 99.48 0.70 -0.16 16 27 H 0.18 -0.49 5.04 -2.91 -0.01 -0.51 16 28 H 0.42 -1.33 8.59 -92.71 -0.80 -2.13 16 29 H 0.08 -0.33 7.84 -2.39 -0.02 -0.35 16 30 H 0.06 -0.06 8.14 -2.39 -0.02 -0.08 16 31 H 0.09 -0.71 6.99 -2.39 -0.02 -0.73 16 32 H 0.12 -1.25 7.90 -2.39 -0.02 -1.27 16 33 H 0.20 -1.32 6.66 -2.91 -0.02 -1.34 16 34 H 0.16 -0.31 8.06 -2.91 -0.02 -0.33 16 35 H 0.20 -0.03 8.06 -2.91 -0.02 -0.05 16 36 H 0.12 -0.93 8.10 -2.39 -0.02 -0.95 16 37 H 0.06 0.00 8.14 -2.39 -0.02 -0.02 16 38 H 0.18 -0.32 8.06 -2.91 -0.02 -0.34 16 Total: 0.00 -21.77 320.71 -0.83 -22.59 By element: Atomic # 1 Polarization: -12.95 SS G_CDS: -0.31 Total: -13.26 kcal Atomic # 6 Polarization: 4.67 SS G_CDS: 7.26 Total: 11.93 kcal Atomic # 7 Polarization: -10.41 SS G_CDS: -7.92 Total: -18.33 kcal Atomic # 8 Polarization: 0.32 SS G_CDS: -1.91 Total: -1.59 kcal Atomic # 14 Polarization: -3.40 SS G_CDS: 2.05 Total: -1.34 kcal Total: -21.77 -0.83 -22.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16945880_12175864.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.352 kcal (2) G-P(sol) polarization free energy of solvation -21.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 148.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 147.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds