Wall clock time and date at job start Mon Mar 8 2021 07:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42906 * 1 3 3 Si 1.86298 * 109.47197 * 2 1 4 4 C 1.50697 * 109.47030 * 120.00067 * 2 1 3 5 5 C 1.38028 * 120.33599 * 244.97655 * 4 2 1 6 6 N 1.31965 * 120.86143 * 180.02562 * 5 4 2 7 7 C 1.32404 * 121.61839 * 0.02562 * 6 5 4 8 8 N 1.39003 * 119.69986 * 180.02562 * 7 6 5 9 9 C 1.46507 * 119.99388 * 180.02562 * 8 7 6 10 10 C 1.53001 * 109.46890 * 179.97438 * 9 8 7 11 11 H 1.09003 * 112.85236 * 314.66779 * 10 9 8 12 12 C 1.53784 * 113.61315 * 85.86171 * 10 9 8 13 13 C 1.53954 * 87.01742 * 139.95225 * 12 10 9 14 14 H 1.09000 * 113.66881 * 220.07153 * 13 12 10 15 15 N 1.46497 * 113.53964 * 89.19215 * 13 12 10 16 16 C 1.34951 * 126.03208 * 347.21761 * 15 13 12 17 17 C 1.35319 * 107.74372 * 179.84110 * 16 15 13 18 18 C 1.39869 * 107.91904 * 0.42273 * 17 16 15 19 19 N 1.30841 * 108.20438 * 359.73985 * 18 17 16 20 20 C 1.53783 * 113.61524 * 183.47240 * 10 9 8 21 21 C 1.39136 * 120.58865 * 0.02562 * 7 6 5 22 22 C 1.38292 * 119.09879 * 359.97438 * 21 7 6 23 23 H 0.96700 * 113.99730 * 300.00769 * 1 2 3 24 24 H 1.09001 * 109.46727 * 240.00040 * 2 1 3 25 25 H 1.48498 * 110.00061 * 178.68281 * 3 2 1 26 26 H 1.48510 * 109.99945 * 299.99666 * 3 2 1 27 27 H 1.08003 * 119.56473 * 0.02562 * 5 4 2 28 28 H 0.96991 * 120.00490 * 0.02562 * 8 7 6 29 29 H 1.08998 * 109.46883 * 300.00035 * 9 8 7 30 30 H 1.09001 * 109.46928 * 60.00294 * 9 8 7 31 31 H 1.08996 * 113.61870 * 254.52904 * 12 10 9 32 32 H 1.08999 * 113.61081 * 25.43709 * 12 10 9 33 33 H 1.07998 * 126.12932 * 0.02562 * 16 15 13 34 34 H 1.08005 * 126.04036 * 180.16415 * 17 16 15 35 35 H 1.08002 * 125.89676 * 179.71643 * 18 17 16 36 36 H 1.09004 * 113.61126 * 334.56567 * 20 10 9 37 37 H 1.08999 * 113.61633 * 105.38594 * 20 10 9 38 38 H 1.07998 * 120.44653 * 180.02562 * 21 7 6 39 39 H 1.07996 * 120.74954 * 179.97438 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 2.6388 -0.0202 2.1939 6 7 3.0839 -0.6321 3.2751 7 6 2.8725 -1.9232 3.4788 8 7 3.3590 -2.5271 4.6323 9 6 3.1293 -3.9554 4.8639 10 6 3.7634 -4.3647 6.1948 11 1 4.7703 -3.9675 6.3239 12 6 2.8494 -4.1330 7.4097 13 6 3.3655 -5.4778 7.9531 14 1 2.5926 -6.0850 8.4243 15 7 4.5721 -5.3527 8.7745 16 6 5.3555 -4.2583 8.8728 17 6 6.3613 -4.5468 9.7309 18 6 6.1919 -5.8657 10.1645 19 7 5.1197 -6.3498 9.5918 20 6 3.6517 -5.8691 6.4937 21 6 2.1678 -2.6806 2.5484 22 6 1.6890 -2.0667 1.4055 23 1 -0.3933 0.4418 0.7650 24 1 1.7923 -0.5138 -0.8900 25 1 3.5346 1.7703 0.0321 26 1 1.5616 2.4679 -1.2086 27 1 2.8306 1.0343 2.0612 28 1 3.8505 -2.0031 5.2839 29 1 2.0574 -4.1504 4.8965 30 1 3.5790 -4.5316 4.0552 31 1 3.1392 -3.2755 8.0170 32 1 1.7874 -4.1398 7.1646 33 1 5.2049 -3.3193 8.3609 34 1 7.1568 -3.8783 10.0253 35 1 6.8353 -6.3936 10.8529 36 1 2.8093 -6.3513 5.9977 37 1 4.5879 -6.4113 6.3611 38 1 1.9963 -3.7335 2.7171 39 1 1.1390 -2.6292 0.6656 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_16945880_13915762.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:00:29 Heat of formation + Delta-G solvation = 127.897418 kcal Electronic energy + Delta-G solvation = -21586.854991 eV Core-core repulsion = 18306.160787 eV Total energy + Delta-G solvation = -3280.694204 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 287.137 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.42108 -41.37043 -39.96298 -38.00769 -36.39783 -33.49410 -32.65436 -31.45456 -30.99794 -28.65353 -26.89463 -26.07846 -24.98356 -24.20896 -22.48338 -22.23184 -21.62310 -20.37498 -18.65808 -18.48766 -17.90393 -17.56089 -16.50035 -16.48076 -16.29355 -16.02003 -15.73856 -15.46160 -15.32405 -15.20264 -14.58222 -14.39537 -14.30372 -14.00844 -13.86504 -13.63950 -13.36409 -13.25228 -12.98941 -12.36027 -12.17178 -12.03264 -11.76877 -11.69372 -11.46432 -11.09472 -10.72193 -10.42150 -10.39154 -10.37436 -9.54174 -8.67695 -4.99007 0.24605 0.41217 0.91939 1.34734 1.52289 1.64689 1.90261 1.98112 2.10942 2.85407 3.18019 3.33722 3.55601 3.58485 3.64955 3.67288 3.80838 3.90088 4.01914 4.04441 4.14520 4.16602 4.33651 4.39961 4.48234 4.53754 4.65108 4.68104 4.70183 4.73426 4.76988 4.85633 4.90216 4.98746 5.02113 5.10832 5.21470 5.31858 5.53662 5.71748 6.03447 6.15128 6.55487 6.73849 6.80917 7.16013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.557 6.557 2 C -0.054 4.054 3 Si 0.765 3.235 4 C -0.239 4.239 5 C 0.148 3.852 6 N -0.565 5.565 7 C 0.395 3.605 8 N -0.719 5.719 9 C 0.141 3.859 10 C -0.114 4.114 11 H 0.096 0.904 12 C -0.124 4.124 13 C 0.117 3.883 14 H 0.109 0.891 15 N -0.360 5.360 16 C 0.054 3.946 17 C -0.290 4.290 18 C 0.032 3.968 19 N -0.340 5.340 20 C -0.130 4.130 21 C -0.242 4.242 22 C -0.014 4.014 23 H 0.394 0.606 24 H 0.106 0.894 25 H -0.289 1.289 26 H -0.298 1.298 27 H 0.168 0.832 28 H 0.407 0.593 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.125 0.875 33 H 0.199 0.801 34 H 0.163 0.837 35 H 0.199 0.801 36 H 0.125 0.875 37 H 0.061 0.939 38 H 0.150 0.850 39 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.013 1.036 1.132 2.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.365 6.365 2 C -0.165 4.165 3 Si 0.672 3.328 4 C -0.244 4.244 5 C -0.009 4.009 6 N -0.282 5.282 7 C 0.158 3.842 8 N -0.351 5.351 9 C 0.017 3.983 10 C -0.132 4.132 11 H 0.114 0.886 12 C -0.162 4.162 13 C 0.015 3.985 14 H 0.127 0.873 15 N -0.142 5.142 16 C -0.092 4.092 17 C -0.319 4.319 18 C -0.153 4.153 19 N -0.162 5.162 20 C -0.168 4.168 21 C -0.267 4.267 22 C -0.040 4.040 23 H 0.244 0.756 24 H 0.123 0.877 25 H -0.216 1.216 26 H -0.225 1.225 27 H 0.185 0.815 28 H 0.243 0.757 29 H 0.100 0.900 30 H 0.086 0.914 31 H 0.102 0.898 32 H 0.143 0.857 33 H 0.215 0.785 34 H 0.181 0.819 35 H 0.216 0.784 36 H 0.143 0.857 37 H 0.080 0.920 38 H 0.167 0.833 39 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -1.918 0.511 0.635 2.084 hybrid contribution 0.705 -0.269 -0.411 0.859 sum -1.213 0.242 0.224 1.257 Atomic orbital electron populations 1.86458 1.17407 1.82111 1.50481 1.24832 0.85050 1.10058 0.96549 0.93907 0.77864 0.75857 0.85164 1.21031 1.07028 0.96283 1.00103 1.22436 0.91424 0.99468 0.87619 1.67144 1.26701 1.09915 1.24470 1.18632 0.89585 0.88400 0.87542 1.44547 1.60429 1.09858 1.20242 1.21480 1.01050 0.79280 0.96499 1.22769 1.00037 0.96595 0.93828 0.88614 1.23527 1.01913 0.94954 0.95816 1.22367 0.84017 1.01406 0.90707 0.87300 1.48614 1.21576 1.09209 1.34826 1.22974 0.92283 0.93875 1.00065 1.21887 1.04905 0.98171 1.06963 1.24371 0.95493 0.95617 0.99789 1.77328 1.13626 1.14471 1.10738 1.23370 1.03921 0.95917 0.93623 1.21640 1.06348 1.02139 0.96527 1.21401 0.93184 0.93610 0.95772 0.75609 0.87660 1.21566 1.22548 0.81524 0.75710 0.89953 0.91404 0.89755 0.85663 0.78453 0.81935 0.78400 0.85696 0.91983 0.83250 0.83897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.23 12.84 -148.98 -1.91 -1.69 16 2 C -0.05 0.05 2.82 71.23 0.20 0.25 16 3 Si 0.77 -1.51 29.83 68.60 2.05 0.53 16 4 C -0.24 -0.07 5.36 -19.76 -0.11 -0.18 16 5 C 0.15 0.19 9.84 84.62 0.83 1.02 16 6 N -0.56 -2.28 10.39 -193.26 -2.01 -4.29 16 7 C 0.39 0.46 7.65 133.06 1.02 1.47 16 8 N -0.72 2.85 5.73 -345.05 -1.98 0.88 16 9 C 0.14 -1.20 4.71 86.38 0.41 -0.79 16 10 C -0.11 1.01 3.33 -10.27 -0.03 0.98 16 11 H 0.10 -0.72 6.96 -2.39 -0.02 -0.73 16 12 C -0.12 1.15 6.89 31.18 0.21 1.36 16 13 C 0.12 -0.43 5.19 45.58 0.24 -0.20 16 14 H 0.11 -0.35 8.14 -2.39 -0.02 -0.37 16 15 N -0.36 -0.89 3.79 -324.71 -1.23 -2.13 16 16 C 0.05 -0.02 9.61 83.54 0.80 0.79 16 17 C -0.29 -0.49 10.80 21.99 0.24 -0.26 16 18 C 0.03 0.15 12.03 85.24 1.02 1.18 16 19 N -0.34 -2.85 12.58 -57.02 -0.72 -3.57 16 20 C -0.13 0.87 7.44 31.12 0.23 1.10 16 21 C -0.24 0.19 9.33 22.50 0.21 0.40 16 22 C -0.01 0.00 9.84 22.44 0.22 0.22 16 23 H 0.39 -3.21 8.70 -74.06 -0.64 -3.85 16 24 H 0.11 0.02 7.96 -2.39 -0.02 0.00 16 25 H -0.29 -0.97 7.11 99.48 0.71 -0.27 16 26 H -0.30 -1.61 7.11 99.48 0.71 -0.90 16 27 H 0.17 -0.50 4.91 -2.91 -0.01 -0.51 16 28 H 0.41 -1.91 8.60 -92.71 -0.80 -2.71 16 29 H 0.08 -0.86 7.66 -2.39 -0.02 -0.88 16 30 H 0.07 -0.53 7.93 -2.39 -0.02 -0.55 16 31 H 0.08 -0.76 6.98 -2.39 -0.02 -0.77 16 32 H 0.13 -1.49 7.92 -2.39 -0.02 -1.51 16 33 H 0.20 -1.42 6.65 -2.91 -0.02 -1.44 16 34 H 0.16 -0.38 8.06 -2.91 -0.02 -0.41 16 35 H 0.20 -0.13 8.06 -2.91 -0.02 -0.15 16 36 H 0.12 -1.33 8.10 -2.39 -0.02 -1.35 16 37 H 0.06 -0.12 8.14 -2.39 -0.02 -0.14 16 38 H 0.15 -0.77 6.71 -2.91 -0.02 -0.79 16 39 H 0.14 -0.31 8.06 -2.91 -0.02 -0.34 16 Total: 0.00 -19.98 323.74 -0.62 -20.60 By element: Atomic # 1 Polarization: -17.36 SS G_CDS: -0.32 Total: -17.68 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: 5.50 Total: 7.34 kcal Atomic # 7 Polarization: -3.17 SS G_CDS: -5.93 Total: -9.10 kcal Atomic # 8 Polarization: 0.23 SS G_CDS: -1.91 Total: -1.69 kcal Atomic # 14 Polarization: -1.51 SS G_CDS: 2.05 Total: 0.53 kcal Total: -19.98 -0.62 -20.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16945880_13915762.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.495 kcal (2) G-P(sol) polarization free energy of solvation -19.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds