Wall clock time and date at job start Mon Mar 8 2021 07:00:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42907 * 1 3 3 Si 1.86310 * 109.46903 * 2 1 4 4 C 1.50700 * 109.46755 * 240.00344 * 2 1 3 5 5 C 1.33319 * 125.95154 * 299.99728 * 4 2 1 6 6 N 1.32118 * 114.57965 * 180.02562 * 5 4 2 7 7 C 1.29689 * 116.86725 * 359.97438 * 6 5 4 8 8 N 1.38611 * 124.94925 * 179.97438 * 7 6 5 9 9 C 1.46501 * 120.00292 * 0.02562 * 8 7 6 10 10 C 1.52996 * 109.47226 * 180.02562 * 9 8 7 11 11 H 1.09003 * 112.84903 * 316.19474 * 10 9 8 12 12 C 1.53778 * 113.69278 * 87.46011 * 10 9 8 13 13 C 1.53782 * 87.08333 * 139.99183 * 12 10 9 14 14 H 1.09000 * 113.69433 * 220.00916 * 13 12 10 15 15 N 1.46502 * 113.61169 * 89.11727 * 13 12 10 16 16 C 1.34948 * 126.03993 * 347.50053 * 15 13 12 17 17 C 1.35315 * 107.74520 * 179.97438 * 16 15 13 18 18 C 1.39870 * 107.92205 * 0.02562 * 17 16 15 19 19 N 1.30839 * 108.19862 * 359.97438 * 18 17 16 20 20 C 1.53783 * 87.07981 * 334.56825 * 13 12 10 21 21 S 1.70962 * 110.09936 * 0.24273 * 7 6 5 22 22 H 0.96698 * 114.00095 * 59.99544 * 1 2 3 23 23 H 1.08997 * 109.47285 * 119.99899 * 2 1 3 24 24 H 1.48498 * 109.99944 * 298.68250 * 3 2 1 25 25 H 1.48498 * 109.99594 * 60.00488 * 3 2 1 26 26 H 1.07997 * 122.71401 * 359.97438 * 5 4 2 27 27 H 0.97002 * 119.99739 * 180.02562 * 8 7 6 28 28 H 1.08996 * 109.47311 * 59.99874 * 9 8 7 29 29 H 1.09000 * 109.46993 * 299.99600 * 9 8 7 30 30 H 1.09000 * 113.61127 * 25.44807 * 12 10 9 31 31 H 1.08997 * 113.62076 * 254.54294 * 12 10 9 32 32 H 1.08007 * 126.12251 * 0.27272 * 16 15 13 33 33 H 1.08001 * 126.03507 * 180.02562 * 17 16 15 34 34 H 1.07997 * 125.89701 * 180.02562 * 18 17 16 35 35 H 1.09004 * 113.61383 * 139.97778 * 20 13 12 36 36 H 1.08995 * 113.61709 * 270.88113 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7566 0.0000 4 6 1.9313 -0.7103 -1.2305 5 6 1.6834 -1.9787 -1.5581 6 7 2.2383 -2.3723 -2.6907 7 6 2.9429 -1.4941 -3.3344 8 7 3.5969 -1.7257 -4.5343 9 6 3.5196 -3.0443 -5.1681 10 6 4.3231 -3.0322 -6.4701 11 1 4.1532 -2.1342 -7.0640 12 6 5.8106 -3.3736 -6.2814 13 6 5.7075 -4.1886 -7.5815 14 1 6.2537 -5.1314 -7.5519 15 7 5.9879 -3.4064 -8.7881 16 6 6.0780 -2.0618 -8.8596 17 6 6.3484 -1.7343 -10.1443 18 6 6.4257 -2.9193 -10.8834 19 7 6.2099 -3.9222 -10.0714 20 6 4.2073 -4.3359 -7.2775 21 16 2.9535 -0.0113 -2.4835 22 1 -0.3933 0.4417 -0.7650 23 1 1.7924 -0.5138 0.8900 24 1 1.5879 2.4586 -1.2242 25 1 1.5615 2.4678 1.2086 26 1 1.0786 -2.6319 -0.9467 27 1 4.1058 -1.0148 -4.9544 28 1 2.4784 -3.2825 -5.3855 29 1 3.9313 -3.7959 -4.4945 30 1 6.0104 -3.9821 -5.3994 31 1 6.4702 -2.5094 -6.3589 32 1 5.9605 -1.3712 -8.0375 33 1 6.4812 -0.7346 -10.5307 34 1 6.6292 -2.9935 -11.9415 35 1 3.5725 -4.2484 -8.1593 36 1 3.9687 -5.2074 -6.6679 There are 50 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 50 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_16945880_15704118.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:00:33 Heat of formation + Delta-G solvation = 135.173723 kcal Electronic energy + Delta-G solvation = -20198.521147 eV Core-core repulsion = 17007.294714 eV Total energy + Delta-G solvation = -3191.226434 eV No. of doubly occupied orbitals = 50 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.47271 -40.79228 -40.05489 -38.09787 -36.54122 -32.66712 -31.41243 -31.01138 -29.09485 -27.15331 -26.43069 -25.10052 -24.01151 -22.42156 -21.80006 -20.87036 -20.48438 -19.73204 -18.25149 -18.03796 -17.28951 -16.69529 -16.57378 -16.26790 -15.97837 -15.81908 -15.57413 -15.40262 -14.96284 -14.77390 -14.53356 -14.01893 -13.88416 -13.74991 -13.45732 -13.17174 -12.92101 -12.38449 -12.30728 -12.05700 -11.90230 -11.85600 -11.54560 -11.23942 -10.92572 -10.36337 -10.28387 -10.20840 -9.54315 -8.78061 -5.08171 -0.05405 0.00883 0.66841 0.91768 1.22763 1.42648 1.53740 1.88845 1.93536 2.01055 2.04361 2.97142 3.08619 3.31903 3.35530 3.39640 3.71305 3.77493 3.88999 3.91484 3.98117 4.18521 4.30549 4.37346 4.46877 4.51912 4.57237 4.60738 4.68734 4.72310 4.76219 4.85741 4.93294 5.07405 5.09537 5.71710 5.74853 5.96139 6.06189 6.33723 6.77248 6.97456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.526 6.526 2 C -0.017 4.017 3 Si 0.654 3.346 4 C -0.304 4.304 5 C 0.119 3.881 6 N -0.551 5.551 7 C 0.324 3.676 8 N -0.693 5.693 9 C 0.147 3.853 10 C -0.129 4.129 11 H 0.100 0.900 12 C -0.138 4.138 13 C 0.134 3.866 14 H 0.113 0.887 15 N -0.356 5.356 16 C 0.051 3.949 17 C -0.273 4.273 18 C 0.045 3.955 19 N -0.293 5.293 20 C -0.134 4.134 21 S 0.088 5.912 22 H 0.377 0.623 23 H 0.125 0.875 24 H -0.244 1.244 25 H -0.238 1.238 26 H 0.176 0.824 27 H 0.414 0.586 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.111 0.889 31 H 0.081 0.919 32 H 0.170 0.830 33 H 0.148 0.852 34 H 0.184 0.816 35 H 0.081 0.919 36 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.847 2.199 0.188 3.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.332 6.332 2 C -0.130 4.130 3 Si 0.553 3.447 4 C -0.427 4.427 5 C -0.032 4.032 6 N -0.276 5.276 7 C -0.046 4.046 8 N -0.333 5.333 9 C 0.021 3.979 10 C -0.148 4.148 11 H 0.118 0.882 12 C -0.176 4.176 13 C 0.031 3.969 14 H 0.131 0.869 15 N -0.138 5.138 16 C -0.095 4.095 17 C -0.302 4.302 18 C -0.141 4.141 19 N -0.114 5.114 20 C -0.173 4.173 21 S 0.337 5.663 22 H 0.225 0.775 23 H 0.143 0.857 24 H -0.168 1.168 25 H -0.161 1.161 26 H 0.193 0.807 27 H 0.251 0.749 28 H 0.090 0.910 29 H 0.092 0.908 30 H 0.129 0.871 31 H 0.100 0.900 32 H 0.187 0.813 33 H 0.166 0.834 34 H 0.201 0.799 35 H 0.100 0.900 36 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 2.991 1.646 0.497 3.451 hybrid contribution -1.261 0.475 -0.386 1.402 sum 1.730 2.122 0.111 2.740 Atomic orbital electron populations 1.86618 1.17489 1.79895 1.49233 1.24079 0.83467 1.09790 0.95694 0.95232 0.91636 0.75253 0.82563 1.25522 1.13170 0.99266 1.04759 1.21328 0.97113 0.93048 0.91720 1.66487 1.17112 1.33569 1.10461 1.23735 0.95144 0.93466 0.92287 1.43996 1.54756 1.14810 1.19732 1.21383 1.00720 0.83765 0.92033 1.22968 0.95429 0.99887 0.96487 0.88230 1.23526 0.96552 1.00944 0.96605 1.22041 0.97902 0.95702 0.81264 0.86899 1.48393 1.54271 1.04250 1.06915 1.22463 1.01914 0.85770 0.99327 1.21568 1.15574 1.00047 0.93023 1.23974 0.99522 0.90427 1.00183 1.77421 1.22802 1.23021 0.88119 1.23368 0.95484 0.97834 1.00625 1.83994 1.51201 1.13801 1.17330 0.77537 0.85713 1.16773 1.16091 0.80702 0.74918 0.91008 0.90803 0.87093 0.89995 0.81266 0.83399 0.79865 0.89985 0.87460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.49 12.87 -35.23 -0.45 -0.94 16 2 C -0.02 0.01 2.99 36.01 0.11 0.11 16 3 Si 0.65 -0.57 31.05 -169.99 -5.28 -5.85 16 4 C -0.30 -0.11 5.74 -36.03 -0.21 -0.32 16 5 C 0.12 0.18 11.22 -19.15 -0.21 -0.03 16 6 N -0.55 -1.34 10.14 -15.21 -0.15 -1.49 16 7 C 0.32 0.17 8.09 -87.68 -0.71 -0.54 16 8 N -0.69 1.41 5.71 -62.30 -0.36 1.05 16 9 C 0.15 -0.36 5.79 -4.04 -0.02 -0.39 16 10 C -0.13 0.49 3.33 -89.81 -0.30 0.19 16 11 H 0.10 -0.38 6.98 -51.93 -0.36 -0.74 16 12 C -0.14 0.56 6.88 -25.92 -0.18 0.38 16 13 C 0.13 -0.23 5.18 -67.11 -0.35 -0.58 16 14 H 0.11 -0.19 8.14 -51.93 -0.42 -0.61 16 15 N -0.36 -0.32 3.79 -54.07 -0.21 -0.52 16 16 C 0.05 -0.02 9.62 -17.22 -0.17 -0.19 16 17 C -0.27 -0.11 10.80 -40.01 -0.43 -0.54 16 18 C 0.05 0.07 12.03 -17.36 -0.21 -0.14 16 19 N -0.29 -1.02 12.57 30.62 0.39 -0.64 16 20 C -0.13 0.36 7.44 -25.92 -0.19 0.17 16 21 S 0.09 -0.05 20.57 -107.50 -2.21 -2.26 16 22 H 0.38 -0.62 8.70 45.56 0.40 -0.23 16 23 H 0.13 -0.16 7.96 -51.93 -0.41 -0.58 16 24 H -0.24 -0.25 7.11 56.52 0.40 0.15 16 25 H -0.24 -0.44 7.11 56.52 0.40 -0.04 16 26 H 0.18 0.09 8.06 -52.49 -0.42 -0.33 16 27 H 0.41 -1.74 8.60 -40.82 -0.35 -2.09 16 28 H 0.07 -0.07 8.14 -51.93 -0.42 -0.49 16 29 H 0.07 -0.14 7.85 -51.93 -0.41 -0.55 16 30 H 0.11 -0.52 7.90 -51.93 -0.41 -0.93 16 31 H 0.08 -0.35 6.97 -51.93 -0.36 -0.71 16 32 H 0.17 -0.63 6.67 -52.48 -0.35 -0.98 16 33 H 0.15 -0.22 8.06 -52.49 -0.42 -0.64 16 34 H 0.18 -0.19 8.06 -52.49 -0.42 -0.61 16 35 H 0.08 -0.08 8.14 -51.93 -0.42 -0.50 16 36 H 0.11 -0.41 8.10 -51.93 -0.42 -0.83 16 LS Contribution 318.36 15.07 4.80 4.80 Total: 0.00 -7.66 318.36 -10.76 -18.42 By element: Atomic # 1 Polarization: -6.30 SS G_CDS: -4.41 Total: -10.71 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: -2.87 Total: -1.86 kcal Atomic # 7 Polarization: -1.27 SS G_CDS: -0.33 Total: -1.60 kcal Atomic # 8 Polarization: -0.49 SS G_CDS: -0.45 Total: -0.94 kcal Atomic # 14 Polarization: -0.57 SS G_CDS: -5.28 Total: -5.85 kcal Atomic # 16 Polarization: -0.05 SS G_CDS: -2.21 Total: -2.26 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -7.66 -10.76 -18.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16945880_15704118.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.597 kcal (2) G-P(sol) polarization free energy of solvation -7.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds