Wall clock time and date at job start Mon Mar 8 2021 07:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42907 * 1 3 3 Si 1.86310 * 109.46903 * 2 1 4 4 C 1.50700 * 109.46755 * 240.00344 * 2 1 3 5 5 C 1.33319 * 125.95154 * 299.99728 * 4 2 1 6 6 N 1.32118 * 114.57965 * 180.02562 * 5 4 2 7 7 C 1.29689 * 116.86725 * 359.97438 * 6 5 4 8 8 N 1.38611 * 124.94925 * 179.97438 * 7 6 5 9 9 C 1.46501 * 120.00292 * 0.02562 * 8 7 6 10 10 C 1.52996 * 109.47226 * 180.02562 * 9 8 7 11 11 H 1.09003 * 112.84903 * 316.19474 * 10 9 8 12 12 C 1.53778 * 113.69278 * 87.46011 * 10 9 8 13 13 C 1.53782 * 87.08333 * 139.99183 * 12 10 9 14 14 H 1.09000 * 113.69433 * 220.00916 * 13 12 10 15 15 N 1.46502 * 113.61169 * 89.11727 * 13 12 10 16 16 C 1.34948 * 126.03993 * 347.50053 * 15 13 12 17 17 C 1.35315 * 107.74520 * 179.97438 * 16 15 13 18 18 C 1.39870 * 107.92205 * 0.02562 * 17 16 15 19 19 N 1.30839 * 108.19862 * 359.97438 * 18 17 16 20 20 C 1.53783 * 87.07981 * 334.56825 * 13 12 10 21 21 S 1.70962 * 110.09936 * 0.24273 * 7 6 5 22 22 H 0.96698 * 114.00095 * 59.99544 * 1 2 3 23 23 H 1.08997 * 109.47285 * 119.99899 * 2 1 3 24 24 H 1.48498 * 109.99944 * 298.68250 * 3 2 1 25 25 H 1.48498 * 109.99594 * 60.00488 * 3 2 1 26 26 H 1.07997 * 122.71401 * 359.97438 * 5 4 2 27 27 H 0.97002 * 119.99739 * 180.02562 * 8 7 6 28 28 H 1.08996 * 109.47311 * 59.99874 * 9 8 7 29 29 H 1.09000 * 109.46993 * 299.99600 * 9 8 7 30 30 H 1.09000 * 113.61127 * 25.44807 * 12 10 9 31 31 H 1.08997 * 113.62076 * 254.54294 * 12 10 9 32 32 H 1.08007 * 126.12251 * 0.27272 * 16 15 13 33 33 H 1.08001 * 126.03507 * 180.02562 * 17 16 15 34 34 H 1.07997 * 125.89701 * 180.02562 * 18 17 16 35 35 H 1.09004 * 113.61383 * 139.97778 * 20 13 12 36 36 H 1.08995 * 113.61709 * 270.88113 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7566 0.0000 4 6 1.9313 -0.7103 -1.2305 5 6 1.6834 -1.9787 -1.5581 6 7 2.2383 -2.3723 -2.6907 7 6 2.9429 -1.4941 -3.3344 8 7 3.5969 -1.7257 -4.5343 9 6 3.5196 -3.0443 -5.1681 10 6 4.3231 -3.0322 -6.4701 11 1 4.1532 -2.1342 -7.0640 12 6 5.8106 -3.3736 -6.2814 13 6 5.7075 -4.1886 -7.5815 14 1 6.2537 -5.1314 -7.5519 15 7 5.9879 -3.4064 -8.7881 16 6 6.0780 -2.0618 -8.8596 17 6 6.3484 -1.7343 -10.1443 18 6 6.4257 -2.9193 -10.8834 19 7 6.2099 -3.9222 -10.0714 20 6 4.2073 -4.3359 -7.2775 21 16 2.9535 -0.0113 -2.4835 22 1 -0.3933 0.4417 -0.7650 23 1 1.7924 -0.5138 0.8900 24 1 1.5879 2.4586 -1.2242 25 1 1.5615 2.4678 1.2086 26 1 1.0786 -2.6319 -0.9467 27 1 4.1058 -1.0148 -4.9544 28 1 2.4784 -3.2825 -5.3855 29 1 3.9313 -3.7959 -4.4945 30 1 6.0104 -3.9821 -5.3994 31 1 6.4702 -2.5094 -6.3589 32 1 5.9605 -1.3712 -8.0375 33 1 6.4812 -0.7346 -10.5307 34 1 6.6292 -2.9935 -11.9415 35 1 3.5725 -4.2484 -8.1593 36 1 3.9687 -5.2074 -6.6679 There are 50 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 50 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_16945880_15704118.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:00:32 Heat of formation + Delta-G solvation = 136.559128 kcal Electronic energy + Delta-G solvation = -20198.461072 eV Core-core repulsion = 17007.294714 eV Total energy + Delta-G solvation = -3191.166358 eV No. of doubly occupied orbitals = 50 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.41043 -40.77518 -39.92673 -38.09389 -36.45615 -32.62096 -31.40698 -30.99832 -28.99481 -26.91327 -26.40151 -25.02027 -23.95743 -22.34421 -21.75102 -20.83406 -20.39444 -19.65797 -18.24606 -17.89898 -17.19551 -16.62527 -16.48124 -16.20994 -15.96238 -15.74300 -15.53103 -15.32594 -14.96444 -14.69931 -14.44214 -13.95432 -13.83882 -13.62503 -13.27194 -13.03199 -12.90273 -12.45771 -12.09645 -12.03765 -11.76410 -11.71668 -11.47038 -11.15891 -10.90910 -10.38413 -10.29542 -10.19112 -9.52460 -8.71933 -5.03382 -0.04794 0.04435 0.67807 0.94164 1.26304 1.52814 1.55520 1.89651 1.92308 1.97788 2.18102 3.18217 3.30998 3.39240 3.56114 3.57795 3.80649 3.91413 3.94196 4.04184 4.17434 4.36929 4.47238 4.58503 4.65290 4.70004 4.70854 4.72357 4.76522 4.85993 4.89193 4.98235 5.05199 5.13294 5.23223 5.73169 5.81143 6.16150 6.17589 6.44035 6.75788 7.02309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.543 6.543 2 C -0.023 4.023 3 Si 0.725 3.275 4 C -0.307 4.307 5 C 0.103 3.897 6 N -0.581 5.581 7 C 0.314 3.686 8 N -0.683 5.683 9 C 0.153 3.847 10 C -0.113 4.113 11 H 0.105 0.895 12 C -0.122 4.122 13 C 0.119 3.881 14 H 0.107 0.893 15 N -0.360 5.360 16 C 0.055 3.945 17 C -0.290 4.290 18 C 0.032 3.968 19 N -0.343 5.343 20 C -0.132 4.132 21 S 0.116 5.884 22 H 0.386 0.614 23 H 0.134 0.866 24 H -0.266 1.266 25 H -0.277 1.277 26 H 0.176 0.824 27 H 0.425 0.575 28 H 0.056 0.944 29 H 0.071 0.929 30 H 0.122 0.878 31 H 0.092 0.908 32 H 0.204 0.796 33 H 0.164 0.836 34 H 0.198 0.802 35 H 0.062 0.938 36 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.518 3.168 0.624 4.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.351 6.351 2 C -0.135 4.135 3 Si 0.628 3.372 4 C -0.430 4.430 5 C -0.047 4.047 6 N -0.307 5.307 7 C -0.056 4.056 8 N -0.324 5.324 9 C 0.027 3.973 10 C -0.132 4.132 11 H 0.123 0.877 12 C -0.160 4.160 13 C 0.017 3.983 14 H 0.125 0.875 15 N -0.142 5.142 16 C -0.091 4.091 17 C -0.319 4.319 18 C -0.154 4.154 19 N -0.164 5.164 20 C -0.171 4.171 21 S 0.366 5.634 22 H 0.235 0.765 23 H 0.152 0.848 24 H -0.192 1.192 25 H -0.202 1.202 26 H 0.193 0.807 27 H 0.265 0.735 28 H 0.075 0.925 29 H 0.089 0.911 30 H 0.140 0.860 31 H 0.111 0.889 32 H 0.220 0.780 33 H 0.182 0.818 34 H 0.215 0.785 35 H 0.081 0.919 36 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 3.681 2.606 0.906 4.600 hybrid contribution -1.504 0.185 -0.522 1.603 sum 2.177 2.791 0.383 3.560 Atomic orbital electron populations 1.86590 1.18260 1.80253 1.50008 1.24284 0.82962 1.10382 0.95914 0.94421 0.90504 0.73190 0.79103 1.25619 1.13168 0.99089 1.05129 1.21422 0.97691 0.93680 0.91950 1.66480 1.18293 1.34773 1.11193 1.23966 0.95018 0.93800 0.92865 1.44048 1.54107 1.15323 1.18885 1.21296 1.00004 0.83566 0.92418 1.22822 0.95464 0.99402 0.95474 0.87724 1.23494 0.96174 1.00950 0.95410 1.22282 0.98381 0.96067 0.81550 0.87492 1.48595 1.53973 1.04980 1.06697 1.23030 1.00309 0.85648 1.00107 1.21893 1.16094 1.00438 0.93452 1.24373 0.99160 0.90804 1.01013 1.77338 1.24814 1.24601 0.89658 1.23364 0.94534 0.99061 1.00184 1.83826 1.50533 1.12647 1.16444 0.76475 0.84811 1.19192 1.20234 0.80666 0.73526 0.92539 0.91072 0.86001 0.88906 0.77953 0.81806 0.78519 0.91939 0.86451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -1.06 12.87 -148.98 -1.92 -2.98 16 2 C -0.02 0.02 2.99 71.24 0.21 0.24 16 3 Si 0.73 -1.49 31.05 68.60 2.13 0.64 16 4 C -0.31 -0.15 5.74 24.57 0.14 -0.01 16 5 C 0.10 0.35 11.22 83.54 0.94 1.29 16 6 N -0.58 -2.91 10.14 -202.04 -2.05 -4.96 16 7 C 0.31 0.14 8.09 179.32 1.45 1.60 16 8 N -0.68 3.53 5.71 -351.02 -2.01 1.52 16 9 C 0.15 -0.85 5.79 86.38 0.50 -0.35 16 10 C -0.11 0.97 3.33 -10.27 -0.03 0.94 16 11 H 0.10 -0.96 6.98 -2.39 -0.02 -0.98 16 12 C -0.12 1.17 6.88 31.12 0.21 1.39 16 13 C 0.12 -0.41 5.18 45.52 0.24 -0.18 16 14 H 0.11 -0.28 8.14 -2.39 -0.02 -0.29 16 15 N -0.36 -0.70 3.79 -324.97 -1.23 -1.93 16 16 C 0.06 -0.10 9.62 83.54 0.80 0.70 16 17 C -0.29 -0.15 10.80 21.99 0.24 0.09 16 18 C 0.03 0.13 12.03 85.24 1.03 1.15 16 19 N -0.34 -2.79 12.57 -57.02 -0.72 -3.51 16 20 C -0.13 0.69 7.44 31.12 0.23 0.92 16 21 S 0.12 -0.23 20.57 -56.49 -1.16 -1.39 16 22 H 0.39 -1.21 8.70 -74.06 -0.64 -1.86 16 23 H 0.13 -0.41 7.96 -2.39 -0.02 -0.43 16 24 H -0.27 -0.44 7.11 99.48 0.71 0.27 16 25 H -0.28 -1.21 7.11 99.48 0.71 -0.50 16 26 H 0.18 0.34 8.06 -2.91 -0.02 0.32 16 27 H 0.43 -4.37 8.60 -92.71 -0.80 -5.17 16 28 H 0.06 -0.10 8.14 -2.39 -0.02 -0.12 16 29 H 0.07 -0.32 7.85 -2.39 -0.02 -0.34 16 30 H 0.12 -1.37 7.90 -2.39 -0.02 -1.39 16 31 H 0.09 -1.03 6.97 -2.39 -0.02 -1.05 16 32 H 0.20 -2.00 6.67 -2.91 -0.02 -2.02 16 33 H 0.16 -0.62 8.06 -2.91 -0.02 -0.64 16 34 H 0.20 -0.19 8.06 -2.91 -0.02 -0.22 16 35 H 0.06 -0.05 8.14 -2.39 -0.02 -0.07 16 36 H 0.12 -0.88 8.10 -2.39 -0.02 -0.89 16 Total: 0.00 -18.93 318.36 -1.28 -20.22 By element: Atomic # 1 Polarization: -15.09 SS G_CDS: -0.28 Total: -15.37 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: 5.96 Total: 7.77 kcal Atomic # 7 Polarization: -2.87 SS G_CDS: -6.00 Total: -8.88 kcal Atomic # 8 Polarization: -1.06 SS G_CDS: -1.92 Total: -2.98 kcal Atomic # 14 Polarization: -1.49 SS G_CDS: 2.13 Total: 0.64 kcal Atomic # 16 Polarization: -0.23 SS G_CDS: -1.16 Total: -1.39 kcal Total: -18.93 -1.28 -20.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16945880_15704118.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.774 kcal (2) G-P(sol) polarization free energy of solvation -18.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.215 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds